mRNA_P-wetherbeei_contig54090.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54090.1.1
Unique NamemRNA_P-wetherbeei_contig54090.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A7V8X7S4_9CHLR (Rieske 2Fe-2S domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8X7S4_9CHLR)

HSP 1 Score: 177 bits (448), Expect = 3.520e-52
Identity = 85/137 (62.04%), Postives = 101/137 (73.72%), Query Frame = 1
Query:  109 PWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            PWLD+ AE +H   +P+ G + P+ +K+ALYG W+GHPLHPA+TDVPIG W ASA LD  G ER AD  LK G LG VA+AVTG AQW DLQN E PRRLG+LHA+LN+ A  LYG+SWVLR  G R AGIA +  G
Sbjct:   15 PWLDKQAETLHGALEPIFGPDAPSGVKDALYGVWMGHPLHPAVTDVPIGAWTASAALDLLGHERSADAMLKLGVLGGVASAVTGAAQWFDLQNLEEPRRLGSLHASLNSAALGLYGVSWVLRSRGQRDAGIATAMTG 151          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A7V9VTI5_9CHLR (Rieske 2Fe-2S domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VTI5_9CHLR)

HSP 1 Score: 172 bits (437), Expect = 2.040e-50
Identity = 89/156 (57.05%), Postives = 107/156 (68.59%), Query Frame = 1
Query:   52 RMTTLSIRTLSDTLTAATAPWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            R+T L +  LS  ++ A  PWLD+ A  +H  +DP+ G  G   +K+ALYGTWLGHPLHP ITD+PIG W +S + D   ME  AD+TLK GT+ A+ AAVTGVAQWHDLQ  E PRR+GTLHA LN  AT  YG SWVLR   +R AGIA S  G
Sbjct:    5 RLTRLDLSNLSAWISTA-MPWLDKPAASLHNAFDPIFGQHGVPIVKDALYGTWLGHPLHPPITDLPIGFWTSSLVFDVLEMEDAADLTLKLGTVSAMGAAVTGVAQWHDLQEMESPRRVGTLHAILNVSATACYGASWVLRARDARAAGIAFSTIG 159          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A7W0ND23_9CHLR (Rieske 2Fe-2S domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0ND23_9CHLR)

HSP 1 Score: 166 bits (420), Expect = 7.140e-48
Identity = 83/147 (56.46%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   79 LSDTLTAATAPWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            LSD + AA  PWLD  AE++  VW+PL+G   P PL++ALYGTWLGHPLHPA+  +P+G W +SA+ D  G E  AD+ LK G  GA+ A VTG AQW D   +  PRRLG LHA LN  AT LY  SW+LR  GSR AG+A S AG
Sbjct:   15 LSDQIIAA-MPWLDEFAEKLRVVWEPLVGQSAPRPLRDALYGTWLGHPLHPAVVLLPVGFWTSSAVFDLLGEEEPADLMLKLGLGGAIVATVTGAAQWQDSGEERKPRRLGALHAGLNTLATVLYASSWILRARGSRGAGVALSTAG 160          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A7V9B2J5_9CHLR (Rieske 2Fe-2S domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B2J5_9CHLR)

HSP 1 Score: 165 bits (418), Expect = 1.090e-47
Identity = 81/137 (59.12%), Postives = 96/137 (70.07%), Query Frame = 1
Query:  109 PWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            PWLD  +ER+  ++DP LG      +K+ALYG   GHPLHPAI D+PIG W++S LLDA GME  AD+TLK GT+ A+AAA+TG AQW D Q  E PRRLGTLHA LN  AT LYG SW+ RD G R  GI+ S  G
Sbjct:   14 PWLDAVSERMSKLYDPFLGPNASAAIKDALYGVRTGHPLHPAIVDLPIGAWSSSLLLDAVGMEEAADLTLKVGTVSALAAALTGAAQWQDTQGMEHPRRLGTLHAMLNVAATGLYGASWLCRDRGYRSTGISLSTVG 150          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A7V9VAL4_9CHLR (Rieske 2Fe-2S domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VAL4_9CHLR)

HSP 1 Score: 160 bits (404), Expect = 1.420e-45
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   64 LSIRTLSDTLTAATAPWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAAS 510
            ++ + LSD +  AT P +D  A  +H  ++PLLG +GP  +K+ALYG WLGHPLHPA+  +PIG W  + LLD  G E+ AD++LK GT+ A+AAA +G AQW D  N E PRRLG LHA LN  ATTLYG SWV R  GSR  G+A S
Sbjct:    1 MATKKLSDRIIEAT-PGIDALAAALHKAYEPLLGQDGPKAVKDALYGVWLGHPLHPAVVTMPIGFWTTTMLLDLMGEEKVADLSLKLGTVSALAAAASGAAQWQDTYNLEKPRRLGALHAALNITATTLYGASWVARARGSRGVGVALS 148          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A6J4V0H5_9CHLR (Ferredoxin, 2Fe-2S n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4V0H5_9CHLR)

HSP 1 Score: 147 bits (370), Expect = 1.310e-39
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 1
Query:  109 PWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            PWLD  A+R+   ++P++G   P  L++ALYG WLGHPLHPA+  VP+G W A+A+ D  G ER AD+TL  G  GAV +AVTG AQW D  + +  +R+G LHA LN GAT LY  S + R  GSR AG+A S  G
Sbjct:   70 PWLDAAADRMQEAFEPVVGQSAPRALRDALYGVWLGHPLHPAVIPVPVGCWTATAVFDLIGEERAADLTLNLGLAGAVVSAVTGAAQWQDYASQKDIKRIGALHAILNTGATVLYAGSAIARRNGSRTAGMALSTLG 206          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A6J4U705_9CHLR (Ferredoxin, 2Fe-2S n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4U705_9CHLR)

HSP 1 Score: 140 bits (352), Expect = 8.340e-38
Identity = 74/147 (50.34%), Postives = 95/147 (64.63%), Query Frame = 1
Query:   79 LSDTLTAATAPWLDRTAERIHAVWDPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            LSD L  A  PWLD TA  +H  ++P+LG + P  +++ALYG WLGHPLH A+  +PIG W ++ + D  G +R AD++L  G + A+ AA TG AQW D  N E PRRLG LHA+LN  +T LY  S +LR    R AGIA S AG
Sbjct:    5 LSDRLIEA-MPWLDGTANAMHKAFEPVLGQDKPRAVRDALYGVWLGHPLHSAVITLPIGFWTSTMVFDVVGEKRAADLSLNLGIITALGAAATGAAQWQDSVNWEKPRRLGALHASLNTVSTVLYAGSALLRRRDRRGAGIALSVAG 150          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A7X6XIE5_9BACT (Rieske (2Fe-2S) protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X6XIE5_9BACT)

HSP 1 Score: 122 bits (305), Expect = 1.470e-30
Identity = 71/144 (49.31%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   94 TAATAPWLDRTAERIHAVWDPLLGAEGPTP--LKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMER-------GADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAG 498
            T A   WLD     +  V    LG + PTP  ++NAL+GTWL HPLHPAITDVP+G W A+ +LDA    R       GAD  +  G +GA  AAVTG+  W     D   RR+G LHATLN GAT LYG S V+R  G+R AG
Sbjct:    3 TIARQRWLDPVDRVLGTVATRALGQDSPTPRAVRNALHGTWLQHPLHPAITDVPVGAWTAATVLDAVDTLRPTNELAAGADAAVAIGLVGAAGAAVTGLNDWQYTSRDT--RRIGVLHATLNVGATLLYGASLVMRRRGARGAG 144          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A1Q7UPU1_9CHLR (Rieske domain-containing protein n=15 Tax=Chloroflexi TaxID=200795 RepID=A0A1Q7UPU1_9CHLR)

HSP 1 Score: 113 bits (283), Expect = 1.650e-27
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  112 WLDRTAERIHAVWDPLLGAEGPT--PLKNALYGTWLGHPLHPAITDVPIGLWAASALLD-------AAGMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            WLD+ A  I        G  G     +K+ L GTWLGHP+HP +TD+PIG W+ + LLD       + G+  GAD++L  G LGA  AAVTGV  W DL   +  RR+G +H  LN   T +Y +S +LR  G R+AGIA S AG
Sbjct:   10 WLDKLANPIQQWLLRFFGQPGQPNRKVKDMLNGTWLGHPVHPVLTDIPIGAWSGTMLLDLVSLNDDSKGLANGADLSLAIGLLGATGAAVTGVTDWSDLDGTD--RRVGFMHGLLNGSITVMYLVSLILRRTGQRRAGIAWSTAG 152          
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Match: A0A352Y3J7_9CHLR (Rieske domain-containing protein n=4 Tax=Ktedonobacter sp. TaxID=1932716 RepID=A0A352Y3J7_9CHLR)

HSP 1 Score: 112 bits (279), Expect = 1.170e-26
Identity = 64/145 (44.14%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  112 WLDRTAERIHAVWDPLLGAEGPT--PLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAA-------GMERGADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTLYGLSWVLRDAGSRKAGIAASAAG 519
            WLD+ A  I        G  G     LK+ L GTWLGH +HP +TD+PIG W+ + LLD         GM  GAD++L  G LGA  +AVTG+  W DL   +  RR+G +H  LN   T +Y +S +LR  G R+AGIA S+AG
Sbjct:   42 WLDKLANPIQQWLLGFFGQPGQPNRKLKDMLNGTWLGHSVHPVLTDIPIGAWSGTMLLDLVSLKDESDGMANGADLSLVLGLLGATGSAVTGLTDWSDLDGTD--RRVGLMHGLLNGSITVMYVVSLILRRTGQRRAGIAVSSAG 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54090.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8X7S4_9CHLR3.520e-5262.04Rieske 2Fe-2S domain-containing protein n=1 Tax=Ch... [more]
A0A7V9VTI5_9CHLR2.040e-5057.05Rieske 2Fe-2S domain-containing protein n=1 Tax=Ch... [more]
A0A7W0ND23_9CHLR7.140e-4856.46Rieske 2Fe-2S domain-containing protein n=1 Tax=Ch... [more]
A0A7V9B2J5_9CHLR1.090e-4759.12Rieske 2Fe-2S domain-containing protein n=1 Tax=Ch... [more]
A0A7V9VAL4_9CHLR1.420e-4554.36Rieske 2Fe-2S domain-containing protein n=1 Tax=Ch... [more]
A0A6J4V0H5_9CHLR1.310e-3951.82Ferredoxin, 2Fe-2S n=1 Tax=uncultured Thermomicrob... [more]
A0A6J4U705_9CHLR8.340e-3850.34Ferredoxin, 2Fe-2S n=1 Tax=uncultured Thermomicrob... [more]
A0A7X6XIE5_9BACT1.470e-3049.31Rieske (2Fe-2S) protein n=1 Tax=Armatimonadetes ba... [more]
A0A1Q7UPU1_9CHLR1.650e-2744.83Rieske domain-containing protein n=15 Tax=Chlorofl... [more]
A0A352Y3J7_9CHLR1.170e-2644.14Rieske domain-containing protein n=4 Tax=Ktedonoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54090contigP-wetherbeei_contig54090:2..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog73044.JNXP01000002_gene2191
PFAMsDUF2231,Rieske
Model size519
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.39e-24
EggNOG OGsCOG2146@1|root,COG2146@2|Bacteria,2I1BQ@201174|Actinobacteria
DescriptionRieske 2Fe-2S
Cds size519
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.457778-CDS-P-wetherbeei_contig54090:1..5201683186808.457778-CDS-P-wetherbeei_contig54090:1..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54090 2..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54090.1.1prot_P-wetherbeei_contig54090.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54090 2..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54090.1.1

>prot_P-wetherbeei_contig54090.1.1 ID=prot_P-wetherbeei_contig54090.1.1|Name=mRNA_P-wetherbeei_contig54090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MRPIPARSARRSPGRRHRMTTLSIRTLSDTLTAATAPWLDRTAERIHAVW
DPLLGAEGPTPLKNALYGTWLGHPLHPAITDVPIGLWAASALLDAAGMER
GADITLKAGTLGAVAAAVTGVAQWHDLQNDEGPRRLGTLHATLNAGATTL
YGLSWVLRDAGSRKAGIAASAAG
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mRNA from alignment at P-wetherbeei_contig54090:2..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54090.1.1 ID=mRNA_P-wetherbeei_contig54090.1.1|Name=mRNA_P-wetherbeei_contig54090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54090:2..520- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACCCATTCCCGCTCGGTCCGCCCGTCGTTCTCCAGGGAGAAGACA CCGCATGACCACACTCTCGATCCGCACGCTCTCCGACACCCTCACCGCCG CCACCGCTCCCTGGCTGGACAGGACGGCCGAGCGCATCCACGCCGTCTGG GACCCGCTGCTCGGCGCAGAGGGCCCGACCCCGTTGAAGAACGCCCTCTA CGGCACCTGGCTCGGGCATCCGCTCCATCCCGCCATCACCGATGTCCCGA TCGGTCTCTGGGCCGCCAGCGCCCTGCTCGACGCCGCCGGCATGGAGCGC GGCGCCGACATCACCCTCAAGGCCGGCACCCTCGGCGCGGTCGCGGCCGC CGTCACCGGCGTCGCCCAGTGGCACGACCTCCAGAACGACGAGGGGCCTC GCCGCCTCGGCACCCTCCACGCGACCCTGAACGCCGGCGCCACCACCCTC TACGGCCTCTCCTGGGTGCTGCGCGACGCCGGATCGCGCAAGGCCGGCAT CGCCGCCTCCGCCGCCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54090:2..520-

>mRNA_P-wetherbeei_contig54090.1.1 ID=mRNA_P-wetherbeei_contig54090.1.1|Name=mRNA_P-wetherbeei_contig54090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig54090:2..520- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACCCATTCCCGCTCGGTCCGCCCGTCGTTCTCCAGGGAGAAGACA
CCGCATGACCACACTCTCGATCCGCACGCTCTCCGACACCCTCACCGCCG
CCACCGCTCCCTGGCTGGACAGGACGGCCGAGCGCATCCACGCCGTCTGG
GACCCGCTGCTCGGCGCAGAGGGCCCGACCCCGTTGAAGAACGCCCTCTA
CGGCACCTGGCTCGGGCATCCGCTCCATCCCGCCATCACCGATGTCCCGA
TCGGTCTCTGGGCCGCCAGCGCCCTGCTCGACGCCGCCGGCATGGAGCGC
GGCGCCGACATCACCCTCAAGGCCGGCACCCTCGGCGCGGTCGCGGCCGC
CGTCACCGGCGTCGCCCAGTGGCACGACCTCCAGAACGACGAGGGGCCTC
GCCGCCTCGGCACCCTCCACGCGACCCTGAACGCCGGCGCCACCACCCTC
TACGGCCTCTCCTGGGTGCTGCGCGACGCCGGATCGCGCAAGGCCGGCAT
CGCCGCCTCCGCCGCCGGG
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