mRNA_P-wetherbeei_contig54082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54082.1.1
Unique NamemRNA_P-wetherbeei_contig54082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A7C4MZX5_9BACT (YCII domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MZX5_9BACT)

HSP 1 Score: 136 bits (342), Expect = 3.440e-39
Identity = 66/111 (59.46%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 MTTSLQERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            M +S +ERI +LTRGMLRK+L+V++SKG+  PE +  LLP+HL+YMIGLEKAG+LFASGPL  G     GDGLTI+   ++  AR +A  DPFV  G RSF +REWT+MEG
Sbjct:    1 MASSAEERIRQLTRGMLRKKLYVILSKGAATPEQIGALLPEHLEYMIGLEKAGVLFASGPLADGQGVTRGDGLTIVRAASMAEARKIAERDPFVVNGLRSFELREWTVMEG 111          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A537RE91_9PROT (YCII domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RE91_9PROT)

HSP 1 Score: 130 bits (328), Expect = 9.220e-37
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   16 QERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            QERI ELT+GMLRK+L+V++SKG   PE +A  LP HL+YMIGLEK G+LFASGPL   D  M GDGLT++     + AR +A  DPFV  G RSF +REWT+MEG
Sbjct:   29 QERIRELTKGMLRKKLYVILSKGGAAPERLAEHLPRHLEYMIGLEKKGVLFASGPLAQADGQMRGDGLTVVRAANAQAAREIAEADPFVVHGLRSFELREWTVMEG 134          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A537VS26_9PROT (YCII domain-containing protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VS26_9PROT)

HSP 1 Score: 127 bits (320), Expect = 1.650e-35
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1
Query:   16 QERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            QERI ELT+ MLRK+L+VV+SKG   PE +A  LP HL+YMIGLEK G+LFASGPL   D    GDGLTIL   + + AR +A  DPFV  G RSF +REWT+MEG
Sbjct:   32 QERIRELTKTMLRKKLYVVLSKGGAAPEKIAEHLPRHLEYMIGLEKKGVLFASGPLAEADGKTRGDGLTILRAASAQAAREIAEADPFVVHGLRSFELREWTVMEG 137          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A537TEZ3_9PROT (YCII domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TEZ3_9PROT)

HSP 1 Score: 129 bits (324), Expect = 2.400e-35
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   16 QERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            QERI ELT+ MLRK+L+VV+SKG   PE +A  LP HL+YMI LEK G+LFASGPL A D  M GDGLTI+   + + AR +A  DPFV  G RSF +REWT+MEG
Sbjct:   95 QERIRELTKSMLRKKLYVVLSKGGAAPEQIAEHLPRHLEYMIALEKKGVLFASGPLAAADGQMRGDGLTIVRAASAQAAREIAEADPFVVHGLRSFELREWTVMEG 200          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A140GVW3_9HYPH (YCII-related domain-containing protein 2 n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GVW3_9HYPH)

HSP 1 Score: 119 bits (299), Expect = 1.370e-32
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   10 SLQERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            SL E I  LT+ MLRK+L+VV+SKG    E +  +LP HL+YMIGLEKAG+LFASGPL        GDGLT+L    L+ AR +A  DPFV    R+F VREWT+MEG
Sbjct:    9 SLDELIKRLTQRMLRKKLYVVLSKGGATAEQLGAVLPKHLEYMIGLEKAGVLFASGPLTTAPGQPAGDGLTVLRAANLDEAREIALADPFVINNLRTFEVREWTVMEG 116          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A1Q7BAG5_9PROT (YCII domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BAG5_9PROT)

HSP 1 Score: 119 bits (297), Expect = 1.540e-32
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   46 MLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            MLRKRL+VV+SKG   P+ +A  LP HL+YMIGLEK G+LFASGPL   D  M GDGLTI+     + AR +A  DPFV  G RSF +REWT+MEG
Sbjct:    1 MLRKRLYVVLSKGGDAPDAIAEYLPQHLEYMIGLEKKGVLFASGPLAEADGQMRGDGLTIVRAANAQAAREIAEADPFVVHGLRSFELREWTVMEG 96          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A7Z7DV63_9BURK (YCII domain-containing protein n=4 Tax=Paraburkholderia TaxID=1822464 RepID=A0A7Z7DV63_9BURK)

HSP 1 Score: 101 bits (251), Expect = 2.040e-25
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 MTTSLQERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            M ++++ER+A    G+L   LF ++S     P+V+ P L DHL YMIGLEK G+LF SGP       + G GLTI+   T E AR LA  DPFV+ G R+F VR WTL EG
Sbjct:    1 MASNVRERLA----GLLGLPLFAILSSDVENPQVLEPHLNDHLDYMIGLEKRGLLFGSGPFKNSRGHLTGGGLTIVRAPTFEDARRLAEQDPFVKIGLRTFDVRSWTLSEG 107          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A1W6ZKB8_9HYPH (YCII domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZKB8_9HYPH)

HSP 1 Score: 98.2 bits (243), Expect = 3.240e-24
Identity = 53/111 (47.75%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    1 MTTSLQERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            M ++ + +IAELT+GML+ +LFV+ S+G G    + P L +HLQYM+ LE+ G LFASGPLG   ++  GDG+TI+   +   AR LA  DPFV  G R+F+++ W +MEG
Sbjct:    1 MPSATELKIAELTKGMLKLKLFVIFSQGKGLD--LKPYLAEHLQYMVDLERQGKLFASGPLG---DSTRGDGMTIVRAASEAEARELAMRDPFVVNGIRTFTLQPWIVMEG 106          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: UPI0018AFC687 (YciI family protein n=1 Tax=Microvirga alba TaxID=2791025 RepID=UPI0018AFC687)

HSP 1 Score: 94.7 bits (234), Expect = 9.310e-23
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   46 MLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            M+RK+LFV+++     P  + P L +HL Y+I LEK GILFASGP    +  + GDGLTI+   + E A  +A  DPF R+G R  +VR+WT+ EG
Sbjct:   19 MMRKQLFVILNSAVAEPAALRPYLAEHLNYLIDLEKRGILFASGPFSDENGQLTGDGLTIVRATSFEDAMKIANEDPFTRSGLRKPTVRQWTVNEG 114          
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Match: A0A345ZVH2_9HYPH (YCII domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZVH2_9HYPH)

HSP 1 Score: 93.6 bits (231), Expect = 1.910e-22
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   46 MLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLEKAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARSFSVREWTLMEG 333
            ML K+LFVV+ K     + + P+L +HLQ+MI LEK G+LFASGPL    +  PGDGL++L   +++ A+ +A  DPFV  G R+F +REWT+MEG
Sbjct:   12 MLGKKLFVVLWKAHEGAQ-LGPVLHEHLQFMIDLEKRGVLFASGPL----SGTPGDGLSVLRAASMDEAQAIAERDPFVLKGLRTFDLREWTVMEG 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4MZX5_9BACT3.440e-3959.46YCII domain-containing protein n=1 Tax=Planctomyce... [more]
A0A537RE91_9PROT9.220e-3760.38YCII domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A537VS26_9PROT1.650e-3561.32YCII domain-containing protein n=4 Tax=Alphaproteo... [more]
A0A537TEZ3_9PROT2.400e-3561.32YCII domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A140GVW3_9HYPH1.370e-3256.48YCII-related domain-containing protein 2 n=2 Tax=R... [more]
A0A1Q7BAG5_9PROT1.540e-3260.42YCII domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A7Z7DV63_9BURK2.040e-2548.65YCII domain-containing protein n=4 Tax=Paraburkhol... [more]
A0A1W6ZKB8_9HYPH3.240e-2447.75YCII domain-containing protein n=1 Tax=Pseudorhodo... [more]
UPI0018AFC6879.310e-2346.88YciI family protein n=1 Tax=Microvirga alba TaxID=... [more]
A0A345ZVH2_9HYPH1.910e-2250.00YCII domain-containing protein n=1 Tax=Pseudolabry... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54082contigP-wetherbeei_contig54082:197..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog401053.AciPR4_3617
PFAMsYCII
Model size333
Max annot lvl2|Bacteria
KEGG koko:K09780
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.09e-18
EggNOG OGsCOG2350@1|root,COG2350@2|Bacteria
DescriptionYCII-related domain
Cds size333
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.2870386-CDS-P-wetherbeei_contig54082:196..5291683186808.2870386-CDS-P-wetherbeei_contig54082:196..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54082 197..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54082.1.1prot_P-wetherbeei_contig54082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54082 197..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54082.1.1

>prot_P-wetherbeei_contig54082.1.1 ID=prot_P-wetherbeei_contig54082.1.1|Name=mRNA_P-wetherbeei_contig54082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MTTSLQERIAELTRGMLRKRLFVVISKGSGRPEVMAPLLPDHLQYMIGLE
KAGILFASGPLGAGDNAMPGDGLTILNVDTLEHARTLAAIDPFVRAGARS
FSVREWTLMEG
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mRNA from alignment at P-wetherbeei_contig54082:197..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54082.1.1 ID=mRNA_P-wetherbeei_contig54082.1.1|Name=mRNA_P-wetherbeei_contig54082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig54082:197..529+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACGTCGCTGCAGGAACGCATCGCGGAGCTGACGAGGGGGATGTT GCGCAAGCGGCTGTTCGTCGTCATCTCCAAGGGCAGTGGTCGGCCGGAAG TTATGGCGCCGCTGCTGCCGGATCATCTGCAGTACATGATCGGACTCGAG AAGGCCGGCATCCTTTTCGCCTCCGGACCGCTCGGCGCAGGCGACAACGC GATGCCCGGCGACGGCCTGACCATTCTCAACGTCGATACGCTCGAACACG CACGCACGCTCGCAGCGATCGATCCGTTCGTTCGTGCGGGTGCTCGCAGC TTCAGCGTTCGCGAATGGACGCTGATGGAAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54082:197..529+

>mRNA_P-wetherbeei_contig54082.1.1 ID=mRNA_P-wetherbeei_contig54082.1.1|Name=mRNA_P-wetherbeei_contig54082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig54082:197..529+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACGTCGCTGCAGGAACGCATCGCGGAGCTGACGAGGGGGATGTT
GCGCAAGCGGCTGTTCGTCGTCATCTCCAAGGGCAGTGGTCGGCCGGAAG
TTATGGCGCCGCTGCTGCCGGATCATCTGCAGTACATGATCGGACTCGAG
AAGGCCGGCATCCTTTTCGCCTCCGGACCGCTCGGCGCAGGCGACAACGC
GATGCCCGGCGACGGCCTGACCATTCTCAACGTCGATACGCTCGAACACG
CACGCACGCTCGCAGCGATCGATCCGTTCGTTCGTGCGGGTGCTCGCAGC
TTCAGCGTTCGCGAATGGACGCTGATGGAAGGA
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