mRNA_P-wetherbeei_contig5406.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5406.3.1
Unique NamemRNA_P-wetherbeei_contig5406.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5406.3.1 vs. uniprot
Match: A0A6A4WEQ2_AMPAM (Protein lap4 n=5 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WEQ2_AMPAM)

HSP 1 Score: 50.4 bits (119), Expect = 2.010e-5
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   40 TEDVTLRK---PLGLVLEGRTD----PTTGENLGVFVRSMQPGLSAERSGRIRPGDRIAAVSST 210
            TEDVTL K   PLGL + G  D    P   +  G FV  + PG  AER+GR+R GDR+ AV+ +
Sbjct: 1156 TEDVTLNKAGGPLGLSIIGGADHSCLPFGRQQSGTFVSKLTPGGPAERTGRLRVGDRLLAVNGS 1219
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5406.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A4WEQ2_AMPAM2.010e-546.88Protein lap4 n=5 Tax=Amphibalanus amphitrite TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5406contigP-wetherbeei_contig5406:2974..3192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTM8
PFAMsPPR,PPR_2
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.76e-10
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size219
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.1742926-CDS-P-wetherbeei_contig5406:2973..31921683186808.1742926-CDS-P-wetherbeei_contig5406:2973..3192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5406 2974..3192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5406.3.1prot_P-wetherbeei_contig5406.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5406 2974..3192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5406.3.1

>prot_P-wetherbeei_contig5406.3.1 ID=prot_P-wetherbeei_contig5406.3.1|Name=mRNA_P-wetherbeei_contig5406.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
PQTINRFREAVDQTEDVTLRKPLGLVLEGRTDPTTGENLGVFVRSMQPGL
SAERSGRIRPGDRIAAVSSTLGG
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mRNA from alignment at P-wetherbeei_contig5406:2974..3192-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5406.3.1 ID=mRNA_P-wetherbeei_contig5406.3.1|Name=mRNA_P-wetherbeei_contig5406.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig5406:2974..3192- (Phaeothamnion wetherbeei SAG_119_79)
CCGCAAACCATCAACAGATTTCGCGAAGCCGTGGATCAGACGGAGGACGT
GACCCTCCGGAAGCCACTTGGACTGGTCCTGGAAGGGCGCACCGACCCGA
CGACAGGGGAGAACCTCGGCGTGTTCGTACGATCGATGCAGCCGGGACTG
TCGGCGGAGCGCAGCGGCCGCATCCGCCCCGGCGACCGCATCGCCGCCGT
CTCTTCGACGCTCGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5406:2974..3192-

>mRNA_P-wetherbeei_contig5406.3.1 ID=mRNA_P-wetherbeei_contig5406.3.1|Name=mRNA_P-wetherbeei_contig5406.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig5406:2974..3192- (Phaeothamnion wetherbeei SAG_119_79)
CCGCAAACCATCAACAGATTTCGCGAAGCCGTGGATCAGACGGAGGACGT
GACCCTCCGGAAGCCACTTGGACTGGTCCTGGAAGGGCGCACCGACCCGA
CGACAGGGGAGAACCTCGGCGTGTTCGTACGATCGATGCAGCCGGGACTG
TCGGCGGAGCGCAGCGGCCGCATCCGCCCCGGCGACCGCATCGCCGCCGT
CTCTTCGACGCTCGGCGGG
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