mRNA_P-wetherbeei_contig5404.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5404.1.1
Unique NamemRNA_P-wetherbeei_contig5404.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.000e-49
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 273
            LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKL D+Q+VDAERYPQL ++K+CFIRGS VRYIQI +A+VDTELLQDACRKE+A
Sbjct:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESA 91
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BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.010e-47
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 273
            QLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKLN++Q+VD ++YPQL ++K+CFIRGS VRYIQI + EVDTELLQDA RKENA
Sbjct:   12 QLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENA 102
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BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.850e-47
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 273
            LFYSFFKTLVGKE+AVELKNDV+LTGTLHSVDQYLNVKL  +++VD ER+PQL ++K CFIRGS VRYIQI A+EVDTELLQDACRKENA
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVSLTGTLHSVDQYLNVKLTGVKVVDEERFPQLGALKGCFIRGSAVRYIQIPASEVDTELLQDACRKENA 91
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S3PVB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB5_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.050e-46
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 273
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKLN++Q+VD ++YPQL ++K+CFIRGS VRYIQI + EVDTELLQDA RKENA
Sbjct:   44 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENA 133
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A6U3SK19_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SK19_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.660e-45
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    7 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKEN 270
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL D+Q+VDAER+PQL +MK+CFIRGS VRY+QI  AEVDTELLQDA R++N
Sbjct:    6 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDAERFPQLTAMKNCFIRGSVVRYVQIPGAEVDTELLQDAARQQN 93
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S2U7M8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7M8_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.360e-44
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 273
            LFYSFFKTLVGKE+A+ELKNDV LTGTLHSVDQYLNVKL D+Q+V+ E+YPQL  +++CFIRGS VRYIQIA  +VDTELLQDA RKENA
Sbjct:   39 LFYSFFKTLVGKEVAIELKNDVVLTGTLHSVDQYLNVKLTDVQVVNKEQYPQLVPLRNCFIRGSVVRYIQIAPGDVDTELLQDATRKENA 128
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A024U6S4_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6S4_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.050e-43
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKE 267
            LFYSFFKTL+GKE+AVELKNDVAL GTLHSVDQYLN+KL D+ +V+  +YPQL +MK+CFIRGS VRYIQIA A+VDTELLQDA R+E
Sbjct:    2 LFYSFFKTLIGKEVAVELKNDVALVGTLHSVDQYLNIKLTDVSVVEENKYPQLMNMKNCFIRGSVVRYIQIAKADVDTELLQDAARRE 89
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S4K237_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K237_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.550e-43
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    4 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA 273
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKLN++ +VD  RYPQL ++ + F+RGS VRYIQI A +VDTELLQDA RKENA
Sbjct:    4 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVSVVDKGRYPQLLTLNNVFVRGSVVRYIQIPAGDVDTELLQDAARKENA 93
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: A0A7S2RW57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW57_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.890e-43
Identity = 69/87 (79.31%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    7 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKE 267
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL D+Q+VD+ER+PQL +MK+CFIRGS VRY+QI A+EVDTELLQDA R++
Sbjct:   49 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDSERFPQLQAMKNCFIRGSVVRYVQIPASEVDTELLQDAARQQ 135
[Close]
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Match: B8BUU1_THAPS (Sm domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUU1_THAPS)

HSP 1 Score: 144 bits (362), Expect = 5.570e-43
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAERYPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKEN 270
            QLF+SFFKTLVGKEIAVELKNDV LTGTLHSVDQYLN+KL ++ +V+ ++YPQL S+K+CFIRGS VRY+QI   +VDTELLQDA RKEN
Sbjct:    1 QLFFSFFKTLVGKEIAVELKNDVVLTGTLHSVDQYLNIKLTNVSVVNQDKYPQLMSLKNCFIRGSVVRYVQINPNDVDTELLQDATRKEN 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI2.000e-4986.67U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A7S3PVL2_9STRA2.010e-4781.32U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A835YRK1_9STRA5.850e-4782.22U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A7S3PVB5_9STRA3.050e-4681.11Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U3SK19_9STRA2.660e-4580.68U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=D... [more]
A0A7S2U7M8_9STRA1.360e-4478.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A024U6S4_9STRA1.050e-4377.27U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=A... [more]
A0A7S4K237_9STRA2.550e-4377.78Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2RW57_9STRA3.890e-4379.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8BUU1_THAPS5.570e-4375.56Sm domain-containing protein (Fragment) n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5404contigP-wetherbeei_contig5404:483..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LC63
Preferred nameLSM2
PFAMsLSM
Model size273
Max annot lvl2759|Eukaryota
KEGG koko:K10523,ko:K12621
KEGG Pathwayko03018,ko03040,ko04340,ko04341,map03018,map03040,map04340,map04341
KEGG ModuleM00354,M00384,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005688,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1902494,GO:1990726,GO:1990904
Exons2
Evalue3.27e-50
EggNOG OGsCOG1958@1|root,KOG3448@2759|Eukaryota
Ec32 ortholog descriptionSm-like protein LSm2
Ec32 orthologEc-20_004600.1
DescriptionmRNA splicing, via spliceosome
Cds size273
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.7277973-CDS-P-wetherbeei_contig5404:482..5931683186807.7277973-CDS-P-wetherbeei_contig5404:482..593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5404 483..593 -
1683186807.740329-CDS-P-wetherbeei_contig5404:781..9431683186807.740329-CDS-P-wetherbeei_contig5404:781..943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5404 782..943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5404.1.1prot_P-wetherbeei_contig5404.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5404 483..943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5404.1.1

>prot_P-wetherbeei_contig5404.1.1 ID=prot_P-wetherbeei_contig5404.1.1|Name=mRNA_P-wetherbeei_contig5404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLNDIQIVDAER
YPQLCSMKSCFIRGSTVRYIQIAAAEVDTELLQDACRKENA
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mRNA from alignment at P-wetherbeei_contig5404:483..943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5404.1.1 ID=mRNA_P-wetherbeei_contig5404.1.1|Name=mRNA_P-wetherbeei_contig5404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=461bp|location=Sequence derived from alignment at P-wetherbeei_contig5404:483..943- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGTTCTACTCGTTTTTCAAGACTCTAGTCGGAAAGGAGATTGCTGT
TGAGCTGAAAAACGATGTCGCTTTGACAGGGACGCTGCACTCTGTCGACC
AGTATTTGAACGTTAAGCTCAATGACATCCAGATAGTGGACGCTGAGCGA
TATCCACAGCTGGTGAGTGCTCACGACCTGCGTATTCCTCTTAAAGTTCA
AGAAGATTGGCAGTCCAAACACCTTCTCTGTCATGTTCCCTCTTCTTTGT
TTGGCCTGCACTGTATTGCGTCCAAATTTTATTTTAGCAAGCTGGAATTG
ACTTTGACTTTTTCGGCTTCCCGTTCTTTTTGTCGGCTGTTGCTCTGCAG
TGCTCGATGAAGAGCTGCTTCATTCGCGGCTCGACTGTGCGATACATCCA
AATCGCCGCGGCGGAGGTAGACACCGAGCTGCTGCAGGACGCGTGTAGGA
AGGAAAATGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5404:483..943-

>mRNA_P-wetherbeei_contig5404.1.1 ID=mRNA_P-wetherbeei_contig5404.1.1|Name=mRNA_P-wetherbeei_contig5404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig5404:483..943- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGTTCTACTCGTTTTTCAAGACTCTAGTCGGAAAGGAGATTGCTGT
TGAGCTGAAAAACGATGTCGCTTTGACAGGGACGCTGCACTCTGTCGACC
AGTATTTGAACGTTAAGCTCAATGACATCCAGATAGTGGACGCTGAGCGA
TATCCACAGCTGTGCTCGATGAAGAGCTGCTTCATTCGCGGCTCGACTGT
GCGATACATCCAAATCGCCGCGGCGGAGGTAGACACCGAGCTGCTGCAGG
ACGCGTGTAGGAAGGAAAATGCG
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