mRNA_P-wetherbeei_contig5401.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5401.1.1
Unique NamemRNA_P-wetherbeei_contig5401.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5401.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5401contigP-wetherbeei_contig5401:2..2400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2399
Hectar predicted targeting categoryother localisation
Exons1
Cds size1962
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.422462-UTR-P-wetherbeei_contig5401:1..4091683186807.422462-UTR-P-wetherbeei_contig5401:1..409Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5401 2..409 -
1683186807.4436104-UTR-P-wetherbeei_contig5401:2371..24001683186807.4436104-UTR-P-wetherbeei_contig5401:2371..2400Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5401 2372..2400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.4319258-CDS-P-wetherbeei_contig5401:409..23711683186807.4319258-CDS-P-wetherbeei_contig5401:409..2371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5401 410..2371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5401.1.1prot_P-wetherbeei_contig5401.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5401 410..2371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5401.1.1

>prot_P-wetherbeei_contig5401.1.1 ID=prot_P-wetherbeei_contig5401.1.1|Name=mRNA_P-wetherbeei_contig5401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=654bp
MHGIHHVPMHMPAAARGLTMATGPQPPQHQAQLQGAAMAVAAPAVAAAAA
GVIPPGSWPAGMYPPPHGLPTAPAAASYGAAPAAGPRTVPGAVARATVSI
TGVQAASGLQLAGAAPFGGGGGVVAAPLPAAATRCSVEGCDFWVDHGGDV
AGSSFCRAHLHAQYANRPAAAVPAAVVAAIPAAAAAPAAAGLLSLPAVGA
AIPAAAATNPAAAAIPAGVQAVPPLLPPPPPRGMLAEEAAALPKEPPVVH
GAPPLAPPTCSHVDVPVPPPAGRSAAAAAMAAAAAAAMAALPSVRCAHMA
SFGAPGGAPLFCVLHRMPGTINLFGAQHRCLVADCTRMAFYCPAGGPKPL
FCGTHREPGMDYLVLSVDGGAEAESNDPLNSDGDDDKYGEDDGGGGGEEA
GDAGGDDDAGGAGGGSGCGSTSNATAGGSGRGGNGSGEDGKDGGAGGGNA
DAPSTAGALQGSAAGADAVAGGTRYAVTLSPPPPLSALESAVAAPGGNTA
QQEEDKVEQQPYEKRRGQQQQQQRRRRGRRRRRRLEAPQQEASLPMLQPV
VTTAAVAPAIERQAAAEPQKRARETEGAASASSISLGNTGGNDGATPPVR
PLRRRRTASALPHMNWGVLSMTAAAASSDVGQHHGAFSWALSCNRLIRAV
LAA*
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mRNA from alignment at P-wetherbeei_contig5401:2..2400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5401.1.1 ID=mRNA_P-wetherbeei_contig5401.1.1|Name=mRNA_P-wetherbeei_contig5401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2399bp|location=Sequence derived from alignment at P-wetherbeei_contig5401:2..2400- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGACGGCGCGGCAGCGGAGCTACGGGATGCATGGGATTCATCACGTT
CCCATGCACATGCCGGCGGCGGCGAGAGGGCTGACGATGGCAACGGGTCC
TCAACCGCCGCAGCATCAGGCGCAGCTTCAAGGCGCGGCAATGGCAGTGG
CGGCGCCGGCAGTGGCGGCGGCAGCGGCGGGTGTCATCCCTCCGGGCAGC
TGGCCGGCCGGTATGTACCCGCCGCCGCACGGACTGCCTACCGCTCCCGC
CGCGGCGAGTTACGGCGCTGCTCCGGCCGCCGGCCCTAGGACGGTGCCCG
GCGCCGTCGCGCGAGCGACAGTATCCATTACCGGTGTGCAGGCCGCAAGC
GGCCTCCAGCTTGCGGGAGCCGCGCCGTTCGGCGGCGGCGGTGGTGTAGT
CGCGGCGCCGCTGCCGGCCGCCGCGACGCGCTGCAGCGTCGAGGGCTGCG
ACTTTTGGGTCGACCACGGCGGCGATGTGGCTGGCAGTAGTTTCTGCAGA
GCGCACCTCCACGCGCAGTACGCCAACCGGCCGGCTGCCGCCGTCCCGGC
CGCCGTCGTGGCGGCGATTCCGGCCGCTGCCGCGGCTCCAGCCGCCGCCG
GACTGCTTTCGCTTCCTGCTGTCGGCGCCGCCATCCCCGCCGCGGCAGCG
ACCAATCCGGCGGCAGCAGCGATTCCTGCAGGGGTGCAGGCCGTGCCGCC
GCTGCTGCCGCCGCCGCCACCCCGCGGCATGCTCGCGGAGGAAGCGGCGG
CGCTGCCCAAAGAGCCGCCGGTGGTGCATGGCGCGCCGCCGCTGGCGCCG
CCTACTTGCTCCCACGTGGATGTGCCCGTGCCACCGCCAGCGGGCCGAAG
CGCGGCAGCGGCGGCAATGGCGGCCGCGGCGGCGGCGGCCATGGCGGCGC
TGCCGTCCGTTCGCTGCGCGCATATGGCGTCGTTCGGTGCGCCGGGCGGG
GCGCCGCTGTTCTGCGTCCTGCACCGAATGCCGGGCACCATCAACCTCTT
CGGGGCACAGCACCGCTGCTTGGTGGCCGATTGTACCCGGATGGCCTTCT
ACTGCCCCGCCGGCGGACCCAAACCGCTCTTCTGCGGGACGCACCGCGAG
CCGGGCATGGACTACCTCGTGTTGAGTGTCGACGGCGGTGCCGAGGCAGA
GAGCAACGATCCGCTCAATAGCGACGGAGACGACGACAAGTACGGGGAGG
ACGACGGGGGTGGCGGCGGGGAGGAAGCCGGCGATGCTGGCGGCGATGAC
GACGCGGGTGGGGCTGGTGGCGGCAGCGGTTGCGGCAGCACCAGCAATGC
CACTGCTGGCGGAAGCGGCCGCGGCGGCAATGGCAGCGGCGAGGACGGCA
AGGACGGTGGTGCGGGCGGCGGCAACGCAGATGCTCCTTCCACTGCCGGT
GCGCTTCAGGGTAGCGCCGCTGGAGCCGATGCCGTCGCCGGCGGCACTCG
CTATGCCGTGACATTGTCGCCTCCGCCGCCACTTTCTGCCCTGGAGTCGG
CAGTGGCGGCGCCGGGAGGCAATACGGCGCAGCAGGAGGAGGACAAAGTG
GAACAGCAGCCGTATGAAAAGCGCCGGGGCCAGCAGCAGCAGCAGCAGCG
GCGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCTAGAGGCACCGCAGCAGG
AAGCCTCGCTGCCGATGCTGCAGCCGGTCGTGACGACGGCTGCCGTGGCG
CCGGCAATCGAGCGGCAAGCGGCAGCGGAACCGCAGAAGCGTGCGCGAGA
GACGGAGGGAGCGGCGTCGGCATCCTCGATCAGCCTTGGCAACACCGGTG
GCAACGACGGCGCTACTCCGCCGGTACGGCCGCTGCGGCGCCGCCGCACA
GCGTCCGCGTTGCCGCACATGAACTGGGGCGTCCTGTCGATGACGGCCGC
GGCCGCGAGCTCCGACGTCGGGCAGCACCACGGCGCTTTCAGCTGGGCGC
TCAGCTGCAACCGGCTGATACGCGCAGTGCTGGCGGCCTGAGCCGGCGCG
GTCATCCTGCGGGTGTGCGGATTGAGCGTGTGTGTATTGCAGAGCGTACG
GCAGTAGCGGCGGCGGCAATTACGGCAACGACGGCGGCGACGGTGGCAAC
CATGATCAATGTTTTGGGACGGGTACTGCATCGTTCGACAGGTTTTGGCT
GTGGCGGGGGCAATGCTGGCGTTGCACGACGAGGTTCTGGCAGCGATGAC
GACGGGTGGTGGCGGCGGCGGTGGCAGATTGGGGTGAACATGTAGATCTC
ACGAGCGAAGTGGCGTCCACTGTGAAAGCGCTGGGCGAGTAGCTGTGGGA
AATGAGTGTCCAGTGGCGGTGGCGATGGCAGCAGGTTCTTTTGTTTCCGG
AGATAGTTAAGGCTGGGATGGTGTCAGGAATCCGGTAATGGCAGTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5401:2..2400-

>mRNA_P-wetherbeei_contig5401.1.1 ID=mRNA_P-wetherbeei_contig5401.1.1|Name=mRNA_P-wetherbeei_contig5401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1962bp|location=Sequence derived from alignment at P-wetherbeei_contig5401:2..2400- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATGGGATTCATCACGTTCCCATGCACATGCCGGCGGCGGCGAGAGG
GCTGACGATGGCAACGGGTCCTCAACCGCCGCAGCATCAGGCGCAGCTTC
AAGGCGCGGCAATGGCAGTGGCGGCGCCGGCAGTGGCGGCGGCAGCGGCG
GGTGTCATCCCTCCGGGCAGCTGGCCGGCCGGTATGTACCCGCCGCCGCA
CGGACTGCCTACCGCTCCCGCCGCGGCGAGTTACGGCGCTGCTCCGGCCG
CCGGCCCTAGGACGGTGCCCGGCGCCGTCGCGCGAGCGACAGTATCCATT
ACCGGTGTGCAGGCCGCAAGCGGCCTCCAGCTTGCGGGAGCCGCGCCGTT
CGGCGGCGGCGGTGGTGTAGTCGCGGCGCCGCTGCCGGCCGCCGCGACGC
GCTGCAGCGTCGAGGGCTGCGACTTTTGGGTCGACCACGGCGGCGATGTG
GCTGGCAGTAGTTTCTGCAGAGCGCACCTCCACGCGCAGTACGCCAACCG
GCCGGCTGCCGCCGTCCCGGCCGCCGTCGTGGCGGCGATTCCGGCCGCTG
CCGCGGCTCCAGCCGCCGCCGGACTGCTTTCGCTTCCTGCTGTCGGCGCC
GCCATCCCCGCCGCGGCAGCGACCAATCCGGCGGCAGCAGCGATTCCTGC
AGGGGTGCAGGCCGTGCCGCCGCTGCTGCCGCCGCCGCCACCCCGCGGCA
TGCTCGCGGAGGAAGCGGCGGCGCTGCCCAAAGAGCCGCCGGTGGTGCAT
GGCGCGCCGCCGCTGGCGCCGCCTACTTGCTCCCACGTGGATGTGCCCGT
GCCACCGCCAGCGGGCCGAAGCGCGGCAGCGGCGGCAATGGCGGCCGCGG
CGGCGGCGGCCATGGCGGCGCTGCCGTCCGTTCGCTGCGCGCATATGGCG
TCGTTCGGTGCGCCGGGCGGGGCGCCGCTGTTCTGCGTCCTGCACCGAAT
GCCGGGCACCATCAACCTCTTCGGGGCACAGCACCGCTGCTTGGTGGCCG
ATTGTACCCGGATGGCCTTCTACTGCCCCGCCGGCGGACCCAAACCGCTC
TTCTGCGGGACGCACCGCGAGCCGGGCATGGACTACCTCGTGTTGAGTGT
CGACGGCGGTGCCGAGGCAGAGAGCAACGATCCGCTCAATAGCGACGGAG
ACGACGACAAGTACGGGGAGGACGACGGGGGTGGCGGCGGGGAGGAAGCC
GGCGATGCTGGCGGCGATGACGACGCGGGTGGGGCTGGTGGCGGCAGCGG
TTGCGGCAGCACCAGCAATGCCACTGCTGGCGGAAGCGGCCGCGGCGGCA
ATGGCAGCGGCGAGGACGGCAAGGACGGTGGTGCGGGCGGCGGCAACGCA
GATGCTCCTTCCACTGCCGGTGCGCTTCAGGGTAGCGCCGCTGGAGCCGA
TGCCGTCGCCGGCGGCACTCGCTATGCCGTGACATTGTCGCCTCCGCCGC
CACTTTCTGCCCTGGAGTCGGCAGTGGCGGCGCCGGGAGGCAATACGGCG
CAGCAGGAGGAGGACAAAGTGGAACAGCAGCCGTATGAAAAGCGCCGGGG
CCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGGGGCGGCGGCGGCGGCGGC
GGCTAGAGGCACCGCAGCAGGAAGCCTCGCTGCCGATGCTGCAGCCGGTC
GTGACGACGGCTGCCGTGGCGCCGGCAATCGAGCGGCAAGCGGCAGCGGA
ACCGCAGAAGCGTGCGCGAGAGACGGAGGGAGCGGCGTCGGCATCCTCGA
TCAGCCTTGGCAACACCGGTGGCAACGACGGCGCTACTCCGCCGGTACGG
CCGCTGCGGCGCCGCCGCACAGCGTCCGCGTTGCCGCACATGAACTGGGG
CGTCCTGTCGATGACGGCCGCGGCCGCGAGCTCCGACGTCGGGCAGCACC
ACGGCGCTTTCAGCTGGGCGCTCAGCTGCAACCGGCTGATACGCGCAGTG
CTGGCGGCCTGA
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