mRNA_P-wetherbeei_contig54005.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54005.1.1
Unique NamemRNA_P-wetherbeei_contig54005.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: UPI001C3C4B34 (polyphenol oxidase family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C4B34)

HSP 1 Score: 201 bits (512), Expect = 2.760e-62
Identity = 109/172 (63.37%), Postives = 120/172 (69.77%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDHPALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGVPASAIQVVAACT 516
            R ALC  LGI+   V+MA QVHGAGV  VG       F  AL  WP +D LVT+ P   LMVLGADCLPV+LWRRD   +  AHAGWRGLV GV+E A+ ALG P R GAAIG GIGPCCYPVS EVR RFA RFG  VV G+AVDLA AARAAL   GV A+A+  V ACT
Sbjct:   51 RTALCAALGIDPAGVAMARQVHGAGVREVGEGDDAGRFTGALRDWPASDALVTRVPGRALMVLGADCLPVLLWRRDGEGVAAAHAGWRGLVAGVVEGAVDALGTPGRTGAAIGPGIGPCCYPVSDEVRRRFADRFGAAVVRGDAVDLAAAARAALVAAGVDAAAVTTVDACT 222          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: UPI001C3E148B (laccase domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E148B)

HSP 1 Score: 191 bits (485), Expect = 3.800e-58
Identity = 106/173 (61.27%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTD-SLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDHPALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGVPASAIQVVAACT 516
            R  +C  LG+   +V+MA QVHGAGV    A   D   F  AL GW + D LVT+ P   L VLGADCLPV+LWRRD PA+  AHAGWRGLVGGVLEAA+ ALG P+R+GAAI      CCYPVSAEVR RFA RFGD VVA  AVDLA AAR AL   GVP +A+   AACT
Sbjct:   54 RRRVCAALGLRPEAVAMARQVHGAGVRDADADDADRGRFLGALRGWRDGDALVTRAPGGALAVLGADCLPVLLWRRDAPAVAAAHAGWRGLVGGVLEAAVAALGAPARVGAAIXXXXXXCCYPVSAEVRRRFAARFGDAVVAPPAVDLAAAARRALVAAGVPDAAVTTAAACT 226          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A535J9M0_9CHLR (Laccase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535J9M0_9CHLR)

HSP 1 Score: 111 bits (278), Expect = 2.780e-27
Identity = 70/164 (42.68%), Postives = 91/164 (55.49%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRV--GARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDH--PALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGV 480
            R   C ++G +   +++ +QVH   VHR   GAR              + D L T E D P++ + ADCLP+ L R +   PA+ VAH GWRGL+ GV+EAA+  LG P  + AA+G  IGPCCY V  +V E F  RFG  VV G  +DL  AA  AL   GV
Sbjct:   48 RRRACAEIGADAERLALNYQVHSTLVHRARPGARGE------------QGDGLWTDERDLPILAMSADCLPLALARANGAAPAVAVAHVGWRGLLAGVVEAAVSTLG-PGAIEAAVGPAIGPCCYEVREDVAEPFRVRFGSQVVRGRRLDLWRAAEQALTNAGV 198          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A538IHA1_9ACTN (Laccase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538IHA1_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 1.610e-25
Identity = 69/162 (42.59%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDH--PALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGV 480
            R   C  +G +   +++ +QVH   V R   R          V   +AD L T EP  P++ L ADCLP+ L R D   PA+ V H GWRGL+ G++EA   ALG+   L AAIG GIGPCCY V  EV   F  RFGD VV    +DL  +A   L   GV
Sbjct:   45 RRIACESIGADLEKLALNYQVHSDRVLRAAPR----------VRGEQADGLWTDEPGLPILALSADCLPIALARADRGEPAVAVLHVGWRGLLAGIVEAGARALGD-RELAAAIGPGIGPCCYDVGEEVAAPFRERFGDDVVHESRLDLWTSAERTLRAAGV 195          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A7W1LHN2_9ACTN (Laccase domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1LHN2_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 4.980e-25
Identity = 68/166 (40.96%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVG----ARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDH--PALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGV 480
            R  LC +LG E   +++  Q+H A VHR        P D L+              T EPD P++   ADCLP+ L R +   PA+ V HAGWRGL+GGV+   +  +G   R  A +G  IGPCCY V  EV E FA  FG  V+ G  +DL  AA  AL   GV
Sbjct:   46 RRRLCAELGGELDRLALNRQIHSALVHRAAPGRRGEPGDGLW--------------TDEPDVPILAFTADCLPIALVRSNGGTPAVAVVHAGWRGLLGGVVANGVATVGGSVR--ACVGPAIGPCCYEVGPEVAELFAAAFGADVLHGRMLDLRAAAERALHAAGV 195          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: UPI0013907ABC (peptidoglycan editing factor PgeF n=1 Tax=Pseudoxanthomonas koreensis TaxID=266061 RepID=UPI0013907ABC)

HSP 1 Score: 106 bits (264), Expect = 8.080e-25
Identity = 78/180 (43.33%), Postives = 94/180 (52.22%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDHPALGVAHAGWRGLVGGVLEAAIGALGEPS-RLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEA-------VDLAGAARAALARCGVPASAIQVVAACT 516
            RA L R  G+   S     QVHG+GV R  AR  D +   A    PEAD  VT +P T L +L ADCLPV+   RD   +G AHAGWRGL GGVLEA + A+  P+ +L A +G   GP  Y + AEVR+ F     +   A  A       VDL   AR  L   G+PA AI     CT
Sbjct:   73 RAELARRAGLPS-SPYWLRQVHGSGVLRFDARAGDEV---AAAEEPEADAAVTSKPGTVLAILTADCLPVVFAARDGSEVGAAHAGWRGLAGGVLEATVAAMATPAAQLLAWLGPAAGPLAYEIGAEVRDAFIGEDPEAASAFTATRPGHWRVDLYALARRRLQGAGMPADAIHGGGLCT 248          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A537TR46_9ACTN (Laccase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537TR46_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 1.110e-24
Identity = 71/160 (44.38%), Postives = 86/160 (53.75%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRD-HPALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCG 477
            R  L   +G + RS  MA QVHGA V    A P D L  +    W   D L +  P   +++L ADCLPV L R    P L + H GWRG++ G+LEA + AL  P  + AAIG GIG CCY V  EV   F  RFGD V+ G  +DL  AA  AL   G
Sbjct:   50 RRRLAEAIGADPRSARMAMQVHGAVVAE--AEPGDIL--ETPRTWEPCDGLWSDRPGQAMLLLTADCLPVALARTSGSPRLALLHVGWRGVLAGILEAGVAAL-APGSVAAAIGPGIGSCCYEVGEEVAGPFRARFGDDVLEGGRLDLRLAAERALRTAG 204          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A537ZV21_9ACTN (Laccase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZV21_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 1.200e-24
Identity = 71/163 (43.56%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRV--GARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDH-PALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGV 480
            R   C ++G +   V+M  QVHGA V+R   G R T              D LVT+EP  PL+ L ADCLP+ L R +  P L + HAG  GL+ GV+EA + ALG  +   A IG GIGPCCY V   +RE +  RFG  V+ G  +DL  AA  AL   GV
Sbjct:   46 RRRACTEVGADPEKVAMNRQVHGATVNRAVAGQRGTPG------------DGLVTEEPQLPLLKLTADCLPIALVRTNGAPGLALLHAGRLGLLEGVVEAGVAALGGEAS--AVIGPGIGPCCYEVGDGIRESYRARFGADVIRGRNLDLWTAAEQALREAGV 194          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A538ELD2_9ACTN (Laccase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538ELD2_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 2.590e-24
Identity = 68/161 (42.24%), Postives = 86/161 (53.42%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDH-PALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGV 480
            R  LC  +G +   +SM  QVH A V+R  A               E D L T EP+ P++ L ADCLPV+L RR+  PAL + H G  GL+ GV+EA + ALG    L AA+G GIGPCCY V  E+ + +  RFG   V G  +DL   A   L   GV
Sbjct:   50 RRRLCDAVGADAELLSMNRQVHAATVNRAAAGERGR----------EGDGLWTDEPNVPMLKLTADCLPVVLARRNGTPALALLHVGRLGLLAGVVEAGVAALGG-GDLAAAVGPGIGPCCYEVGDEISDAYRARFGAAAVHGRNLDLWAVAERVLGDAGV 199          
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Match: A0A7W0UDA8_9ACTN (Laccase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0UDA8_9ACTN)

HSP 1 Score: 103 bits (257), Expect = 3.410e-24
Identity = 68/166 (40.96%), Postives = 88/166 (53.01%), Query Frame = 1
Query:    1 RAALCRDLGIEGRSVSMAHQVHGAGVHRV--GAR--PTDSLFPDALVGWPEADVLVTQEPDTPLMVLGADCLPVILWRRDH--PALGVAHAGWRGLVGGVLEAAIGALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGAARAALARCGV 480
            R  LC  LG +   +++  QVH   V +   G R  P D L+              T+EPD P++ L ADCLP+ L R +   P + V HAGWRGL+GG++ A +  LG    L A +G  IGPCCY V  +V E F   FG GV+ G  +DL  AA  AL R GV
Sbjct:   46 RRRLCTVLGTDAAGLALNRQVHSTLVRKATRGTRGEPGDGLW--------------TEEPDLPVLALTADCLPIALVRANGEVPGVAVLHAGWRGLIGGIVAAGVDTLG--GSLQACVGPAIGPCCYEVGPDVAEPFTAAFGAGVLRGRNLDLWFAAERALERAGV 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54005.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C4B342.760e-6263.37polyphenol oxidase family protein n=1 Tax=Miltonco... [more]
UPI001C3E148B3.800e-5861.27laccase domain-containing protein n=1 Tax=Miltonco... [more]
A0A535J9M0_9CHLR2.780e-2742.68Laccase domain-containing protein n=1 Tax=Chlorofl... [more]
A0A538IHA1_9ACTN1.610e-2542.59Laccase domain-containing protein n=1 Tax=Actinomy... [more]
A0A7W1LHN2_9ACTN4.980e-2540.96Laccase domain-containing protein (Fragment) n=1 T... [more]
UPI0013907ABC8.080e-2543.33peptidoglycan editing factor PgeF n=1 Tax=Pseudoxa... [more]
A0A537TR46_9ACTN1.110e-2444.38Laccase domain-containing protein n=1 Tax=Actinomy... [more]
A0A537ZV21_9ACTN1.200e-2443.56Laccase domain-containing protein n=1 Tax=Actinomy... [more]
A0A538ELD2_9ACTN2.590e-2442.24Laccase domain-containing protein n=1 Tax=Actinomy... [more]
A0A7W0UDA8_9ACTN3.410e-2440.96Laccase domain-containing protein n=1 Tax=Actinomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54005contigP-wetherbeei_contig54005:19..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1384054.N790_02545
PFAMsCu-oxidase_4
Model size516
Max annot lvl135614|Xanthomonadales
KEGG koko:K05810
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.05e-21
EggNOG OGsCOG1496@1|root,COG1496@2|Bacteria,1MW2H@1224|Proteobacteria,1RNV4@1236|Gammaproteobacteria,1X34B@135614|Xanthomonadales
DescriptionBelongs to the multicopper oxidase YfiH RL5 family
Cds size516
COG categoryS
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.3875499-CDS-P-wetherbeei_contig54005:18..5341683186807.3875499-CDS-P-wetherbeei_contig54005:18..534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54005 19..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54005.1.1prot_P-wetherbeei_contig54005.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54005 19..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54005.1.1

>prot_P-wetherbeei_contig54005.1.1 ID=prot_P-wetherbeei_contig54005.1.1|Name=mRNA_P-wetherbeei_contig54005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
RAALCRDLGIEGRSVSMAHQVHGAGVHRVGARPTDSLFPDALVGWPEADV
LVTQEPDTPLMVLGADCLPVILWRRDHPALGVAHAGWRGLVGGVLEAAIG
ALGEPSRLGAAIGAGIGPCCYPVSAEVRERFATRFGDGVVAGEAVDLAGA
ARAALARCGVPASAIQVVAACT
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mRNA from alignment at P-wetherbeei_contig54005:19..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54005.1.1 ID=mRNA_P-wetherbeei_contig54005.1.1|Name=mRNA_P-wetherbeei_contig54005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig54005:19..534- (Phaeothamnion wetherbeei SAG_119_79)
CGAGCCGCTCTGTGTCGCGATCTCGGCATCGAGGGTCGGAGCGTGAGCAT GGCCCACCAGGTTCACGGCGCCGGCGTCCATCGGGTGGGGGCCCGTCCCA CGGACAGCCTGTTCCCCGATGCCCTCGTGGGGTGGCCCGAGGCCGACGTG CTCGTGACGCAGGAGCCGGACACGCCGCTGATGGTGCTCGGGGCGGACTG CCTGCCGGTGATCCTCTGGCGCCGCGATCACCCGGCCTTGGGGGTGGCCC ACGCGGGCTGGCGCGGTCTGGTGGGGGGAGTGCTGGAGGCGGCGATCGGC GCTCTGGGCGAGCCGTCGCGGCTCGGGGCCGCGATCGGTGCGGGGATCGG CCCCTGCTGCTATCCGGTGTCGGCCGAGGTGCGCGAGCGGTTCGCCACGC GCTTTGGCGACGGCGTGGTGGCGGGCGAGGCGGTCGACCTGGCGGGCGCG GCCCGCGCGGCCCTCGCGCGGTGCGGCGTGCCGGCCTCGGCGATCCAGGT GGTGGCCGCCTGCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54005:19..534-

>mRNA_P-wetherbeei_contig54005.1.1 ID=mRNA_P-wetherbeei_contig54005.1.1|Name=mRNA_P-wetherbeei_contig54005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig54005:19..534- (Phaeothamnion wetherbeei SAG_119_79)
CGAGCCGCTCTGTGTCGCGATCTCGGCATCGAGGGTCGGAGCGTGAGCAT
GGCCCACCAGGTTCACGGCGCCGGCGTCCATCGGGTGGGGGCCCGTCCCA
CGGACAGCCTGTTCCCCGATGCCCTCGTGGGGTGGCCCGAGGCCGACGTG
CTCGTGACGCAGGAGCCGGACACGCCGCTGATGGTGCTCGGGGCGGACTG
CCTGCCGGTGATCCTCTGGCGCCGCGATCACCCGGCCTTGGGGGTGGCCC
ACGCGGGCTGGCGCGGTCTGGTGGGGGGAGTGCTGGAGGCGGCGATCGGC
GCTCTGGGCGAGCCGTCGCGGCTCGGGGCCGCGATCGGTGCGGGGATCGG
CCCCTGCTGCTATCCGGTGTCGGCCGAGGTGCGCGAGCGGTTCGCCACGC
GCTTTGGCGACGGCGTGGTGGCGGGCGAGGCGGTCGACCTGGCGGGCGCG
GCCCGCGCGGCCCTCGCGCGGTGCGGCGTGCCGGCCTCGGCGATCCAGGT
GGTGGCCGCCTGCACC
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