mRNA_P-wetherbeei_contig54004.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A521ZFA6_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZFA6_9BURK) HSP 1 Score: 57.8 bits (138), Expect = 1.740e-9 Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 37 EFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFG 153
EFD+GRVE IKQ+IRDG+F VDSGVVADKL+ +V +L G
Sbjct: 60 EFDAGRVESIKQAIRDGQFLVDSGVVADKLLQSVQELLG 98
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI000A171D45 (flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Derxia lacustris TaxID=764842 RepID=UPI000A171D45) HSP 1 Score: 54.7 bits (130), Expect = 2.760e-8 Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 4 LASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDL 147
L S+ A FDS +VE IKQ+IRDG+FEVDS VADKLI+ V+D+
Sbjct: 47 LKSVEADIKEPAFDSAKVESIKQAIRDGKFEVDSSAVADKLISGVSDM 94
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI001F5354A8 (flagellar biosynthesis anti-sigma factor FlgM n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI001F5354A8) HSP 1 Score: 53.1 bits (126), Expect = 1.040e-7 Identity = 24/45 (53.33%), Postives = 38/45 (84.44%), Query Frame = 1
Query: 13 LSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDL 147
L+ +E NA+FD+ +V++I Q+IRDG++EV++ V+ADKLIAN +L
Sbjct: 47 LAVTEGNADFDAEKVQRIAQAIRDGKYEVNADVIADKLIANAREL 91
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A8B6X7M3_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Derxia gummosa DSM 723 TaxID=1121388 RepID=A0A8B6X7M3_9BURK) HSP 1 Score: 52.0 bits (123), Expect = 3.160e-7 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 4 LASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDL 147
L S+ A FD+ +VEQ+K +IRDG+FEVDS VADKLIA +D+
Sbjct: 47 LKSVEADIKEPSFDAAKVEQVKAAIRDGKFEVDSSAVADKLIAGSSDM 94
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI000FDF0A73 (flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDF0A73) HSP 1 Score: 52.0 bits (123), Expect = 3.440e-7 Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 1 GLASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFG 153
G +L + NAEFD+ +VE+I Q+I DG F+V++ +ADKLIAN +L G
Sbjct: 50 GAEALRGTAENAEFDAAKVERISQAISDGSFQVNAEAIADKLIANAQELLG 100
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A5C7Q3K4_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7Q3K4_9BURK) HSP 1 Score: 50.8 bits (120), Expect = 9.550e-7 Identity = 25/49 (51.02%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 7 ASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFG 153
A+L A+ S A+FD+ +V++I Q+I DG F+V++ V+ADKLIAN +L G
Sbjct: 51 ANLMANPSAADFDADKVQRISQAIADGSFQVNAEVIADKLIANAQELLG 99
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A368L3Z0_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L3Z0_9BURK) HSP 1 Score: 50.1 bits (118), Expect = 1.870e-6 Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 40 FDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGN 156
FD+ +VE I Q+IRDG+F V+S VVADKL+A+V +L GN
Sbjct: 64 FDAQKVESITQAIRDGKFTVNSDVVADKLLASVRELVGN 102
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI001AE0A02D (flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Rhizobacter sp. AJA081-3 TaxID=2753607 RepID=UPI001AE0A02D) HSP 1 Score: 50.1 bits (118), Expect = 1.950e-6 Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 7 ASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGNV 159
ASL A S+A+FD+ +V +I Q+I DG +++++ V+ADKLIAN ++ G V
Sbjct: 52 ASLMAGASSADFDAEKVSRISQAIADGSYKINAEVIADKLIANAQEVLGKV 102
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A536V4A6_9PROT (Negative regulator of flagellin synthesis n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536V4A6_9PROT) HSP 1 Score: 49.7 bits (117), Expect = 2.140e-6 Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 28 SNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGNV 159
S EFD+ +V +I Q+IRDG+F+V++ +ADKLIAN +L G V
Sbjct: 47 STPEFDADKVSRIAQAIRDGKFQVNAEAIADKLIANAQELLGKV 90
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A1A8XL18_9RHOO (Negative regulator of flagellin synthesis n=1 Tax=Candidatus Propionivibrio aalborgensis TaxID=1860101 RepID=A0A1A8XL18_9RHOO) HSP 1 Score: 48.9 bits (115), Expect = 4.480e-6 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 7 ASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGN 156
A LS ++ FD+ RV +IKQ+I DGRF +++G +AD+LIA+ +L N
Sbjct: 41 AQLSTTDDQPPFDATRVSEIKQAISDGRFAINAGAIADRLIASAKELVDN 90 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig54004.1.1 >prot_P-wetherbeei_contig54004.1.1 ID=prot_P-wetherbeei_contig54004.1.1|Name=mRNA_P-wetherbeei_contig54004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp GLASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFback to top mRNA from alignment at P-wetherbeei_contig54004:370..534- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig54004.1.1 ID=mRNA_P-wetherbeei_contig54004.1.1|Name=mRNA_P-wetherbeei_contig54004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig54004:370..534- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig54004:370..534- >mRNA_P-wetherbeei_contig54004.1.1 ID=mRNA_P-wetherbeei_contig54004.1.1|Name=mRNA_P-wetherbeei_contig54004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig54004:370..534- (Phaeothamnion wetherbeei SAG_119_79)back to top |