prot_P-wetherbeei_contig54.6.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig54.6.1
Unique Nameprot_P-wetherbeei_contig54.6.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length192
Homology
BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Match: UPI00142D5125 (uncharacterized protein LOC103851799 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D5125)

HSP 1 Score: 59.3 bits (142), Expect = 6.610e-7
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 0
Query:   28 RGQTPYDALHGHPPSTADFRPFGSGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTSSQVHFDEDVFPSTSLA 116
            + +TP++ LHG PP+ +  R  G  AY H   ++   G KF  R+   +++G  S   GW+++ L    V  S  V F EDVFP  + A
Sbjct:  696 KNKTPFELLHGQPPTISHLRVLGCLAYAH---NKNTKGDKFAPRSRRCILIGYPSGTKGWKLFDLEQETVFISRDVTFQEDVFPYDNKA 781          
BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Match: Q55IK1_CRYNB (Integrase catalytic domain-containing protein n=2 Tax=Cryptococcus neoformans TaxID=5207 RepID=Q55IK1_CRYNB)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-6
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 0
Query:   31 TPYDALHGHPPSTADFRPFGSGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTSSQVHFDEDVFPSTS 114
            TPY  LH  PP+ A  R  G  A+V L  H+RP   K   RA +  M+G       +R++  AAR++V S  V FDE  FP  S
Sbjct:  656 TPYQILHARPPNLAHLRVIGCAAWVLLPKHKRPH--KLAPRAYLCCMLGYSLEQKAYRLWDPAARQLVISRDVVFDETQFPFAS 737          
BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Match: UPI0006AA6354 (uncharacterized protein LOC106413549 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA6354)

HSP 1 Score: 53.9 bits (128), Expect = 4.360e-5
Identity = 30/83 (36.14%), Postives = 39/83 (46.99%), Query Frame = 0
Query:   29 GQTPYDALHGHPPSTADFRPFGSGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTSSQVHFDEDVFP 111
            G+TPY+ LHG PPS    R FG   Y H     +    KF  R+   + +G       W +Y + A +  TS  V F ED FP
Sbjct:  685 GKTPYEVLHGSPPSFGSLRVFGCLCYAHRRHRDKD---KFGDRSRKCLFVGYPYGKKAWNLYDIDANEFFTSRDVIFCEDTFP 764          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00142D51256.610e-734.83uncharacterized protein LOC103851799 isoform X1 n=... [more]
Q55IK1_CRYNB2.230e-640.48Integrase catalytic domain-containing protein n=2 ... [more]
UPI0006AA63544.360e-536.14uncharacterized protein LOC106413549 n=1 Tax=Brass... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 5..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54contigP-wetherbeei_contig54:8295..8870 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54.6.1mRNA_P-wetherbeei_contig54.6.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig54 8208..8948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig54.6.1 ID=prot_P-wetherbeei_contig54.6.1|Name=mRNA_P-wetherbeei_contig54.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
MSRSVSEWKHPIAPSTSSAGAASRRCPRGQTPYDALHGHPPSTADFRPFG
SGAYVHLLPHQRPAGGKFTQRAVMGVMMGCCSNGAGWRIYMLAARKVVTS
SQVHFDEDVFPSTSLAGAGTAAGDDAIVPWPEVKNITAAAGGGGDVAPSE
ASIADAATDGPAGAEEAGATAGAGGGGNDGGRRRRRQRRQR*
back to top