mRNA_P-wetherbeei_contig12413.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12413.2.1
Unique NamemRNA_P-wetherbeei_contig12413.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A7C4TQW6_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TQW6_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 2.470e-47
Identity = 76/109 (69.72%), Postives = 96/109 (88.07%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDG 327
            M I+PAFAQ  +  GGD L  L+PI+LMFVIFYFLLFRPQQQRMK  REM+AN+RRGD++VT+GG+IGK+TKV+DDRE+EVEIA +TRVR+V+  +AEVRT++EPVK+G
Sbjct:    1 MFISPAFAQTGAPGGGDFLFQLMPILLMFVIFYFLLFRPQQQRMKQHREMVANLRRGDTVVTAGGIIGKVTKVVDDREIEVEIAGNTRVRVVKGTVAEVRTRAEPVKEG 109          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A6N6SRU7_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SRU7_9HYPH)

HSP 1 Score: 148 bits (373), Expect = 3.790e-44
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            M I+PA+AQGTS  GGD L  L+PI+LMFVIFY LL RPQQQR+KA +EM+AN+RRGD++VTSGG+IGK+TKV DD E+EVEIA +TRVR+++  ++EVR K EPVK+ A
Sbjct:    1 MFISPAYAQGTSG-GGDFLVQLVPILLMFVIFYLLLLRPQQQRVKAHKEMVANIRRGDTVVTSGGIIGKVTKVRDDNEIEVEIADNTRVRVIKGTVSEVRAKGEPVKESA 109          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A7C2QQD2_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QQD2_9HYPH)

HSP 1 Score: 147 bits (372), Expect = 5.220e-44
Identity = 76/109 (69.72%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    4 LITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            +ITPA+AQGTS  GGD    L+PIILMFVIFY LL RPQQQR K  REM+AN+RRGD++VTSGG+IGK+TKV DD E+EVEIA +TRVR+VR  +AEVR K EPVK+ A
Sbjct:    1 MITPAYAQGTSG-GGDFFIQLVPIILMFVIFYILLLRPQQQRAKLHREMVANLRRGDTVVTSGGIIGKVTKVRDDNEIEVEIADNTRVRVVRGTVAEVRAKGEPVKESA 108          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: UPI0010C9BAFF (preprotein translocase subunit YajC n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C9BAFF)

HSP 1 Score: 146 bits (368), Expect = 2.480e-43
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            M ITPAFAQ T A   D L ++LP+I +FVIFYFLL RPQQ+R K  +EM+AN+RRGD++VTSGGL+GK++KVID+RE++VE+A + RVR+V+SM+AEVR K EPVKD A
Sbjct:    1 MFITPAFAQSTGAPASDFLVSMLPLIAIFVIFYFLLIRPQQRRAKQHQEMIANIRRGDTVVTSGGLVGKVSKVIDEREIQVELAENVRVRVVKSMVAEVRAKGEPVKDEA 110          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A833GGQ0_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GGQ0_9HYPH)

HSP 1 Score: 142 bits (359), Expect = 5.300e-42
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGD-VLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            MLI+PA+AQG + FGGD VL +LLP +L+FVI YFL+ RPQQ+RMK  +EM+ N+RRGD++VT+GGLIGK+TKVIDD +VE+EI  D R+R VR MIAEVRTK EPVKD A
Sbjct:    1 MLISPAYAQG-AGFGGDNVLVSLLPFLLIFVIMYFLILRPQQKRMKQHQEMVKNLRRGDTVVTTGGLIGKVTKVIDDDQVEMEIGEDVRIRQVRQMIAEVRTKGEPVKDNA 110          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A562TJE0_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Roseibium hamelinense TaxID=150831 RepID=A0A562TJE0_9HYPH)

HSP 1 Score: 140 bits (352), Expect = 6.170e-41
Identity = 68/110 (61.82%), Postives = 90/110 (81.82%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            ML+TPA+AQ   A G D L +LLP +L+F I YFL+ RPQ+QRMK  +E++AN+RRGD+IVTSGGLIGK+ KV+DD E++VE++   +VRIVRSM+ EVR+KSEP K+GA
Sbjct:    1 MLVTPAYAQAAGAGGQDFLLSLLPFVLIFAIMYFLIIRPQRQRMKQHQELVANLRRGDTIVTSGGLIGKVAKVVDDGEIQVELSEGVKVRIVRSMVQEVRSKSEPAKEGA 110          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A1L9QEC2_9PROT (Sec translocon accessory complex subunit YajC n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1L9QEC2_9PROT)

HSP 1 Score: 139 bits (351), Expect = 8.760e-41
Identity = 65/110 (59.09%), Postives = 92/110 (83.64%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            MLITPA+AQG  A G D L ++LP + +F I YFL+ RPQ+QRMK  +EM++N+RRGD++VT+GGLIGK++KV+DD E++VE++   +VR+VRSM+ EVR+K+EPVK+GA
Sbjct:    1 MLITPAYAQGAGAAGPDFLMSMLPFVAIFAIMYFLIIRPQRQRMKQHQEMVSNLRRGDTVVTTGGLIGKVSKVVDDGEIQVELSEGVKVRVVRSMVQEVRSKTEPVKEGA 110          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: UPI001185B8D5 (preprotein translocase subunit YajC n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI001185B8D5)

HSP 1 Score: 139 bits (350), Expect = 1.360e-40
Identity = 67/108 (62.04%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKD 324
            M ITPA+AQG +A   D L ++LP++ +FVIFYFLL RPQQ+R K  +EM+ N+RRGD+IVT+GGLIGK++KVID+RE++VEIA + RVR+V+SM+ EVR K EP KD
Sbjct:    1 MFITPAYAQGIAAPSSDFLVSMLPLVAIFVIFYFLLIRPQQRRAKQHQEMVTNIRRGDTIVTTGGLIGKVSKVIDEREIQVEIAENVRVRVVKSMVGEVRVKGEPAKD 108          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A431MYW2_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A431MYW2_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 1.710e-40
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGG--DVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDGA 330
            M ITPA+AQ   AFGG  D+L N++PI+LMFVIFYFLL RPQQQR+K  REM+AN+RRGD++VTSGG+IGK+TKV D+ E+EVEIA +TRVR+++S ++EVR K E  K+ A
Sbjct:    1 MFITPAYAQ---AFGGGSDMLVNIVPILLMFVIFYFLLLRPQQQRVKQHREMVANLRRGDTVVTSGGIIGKVTKVRDEAEIEVEIAENTRVRVIKSTVSEVRAKGEAAKEPA 109          
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Match: A0A7X5J7U8_9HYPH (Sec translocon accessory complex subunit YajC n=1 Tax=Pannonibacter sp. XCT-53 TaxID=2750085 RepID=A0A7X5J7U8_9HYPH)

HSP 1 Score: 139 bits (349), Expect = 1.770e-40
Identity = 67/109 (61.47%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    1 MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREMLANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVRTKSEPVKDG 327
            M ITPA+AQ   A G D+L ++LP + +F I YFL+ RPQQ+RMKA +EM+AN+RRGD +VTSGGLI K+ KV+DD E++VE+A   + R+VRSM+AEVR+KSEPVKDG
Sbjct:    1 MFITPAYAQTAGAGGPDLLISMLPFVAIFAIMYFLIIRPQQKRMKAHKEMIANLRRGDVVVTSGGLIAKVVKVVDDAEIQVELAEGVKARLVRSMVAEVRSKSEPVKDG 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12413.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TQW6_9HYPH2.470e-4769.72Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A6N6SRU7_9HYPH3.790e-4466.36Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A7C2QQD2_9HYPH5.220e-4469.72Sec translocon accessory complex subunit YajC n=1 ... [more]
UPI0010C9BAFF2.480e-4364.55preprotein translocase subunit YajC n=1 Tax=Rhodol... [more]
A0A833GGQ0_9HYPH5.300e-4267.57Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A562TJE0_9HYPH6.170e-4161.82Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A1L9QEC2_9PROT8.760e-4159.09Sec translocon accessory complex subunit YajC n=5 ... [more]
UPI001185B8D51.360e-4062.04preprotein translocase subunit YajC n=1 Tax=Rhodol... [more]
A0A431MYW2_9HYPH1.710e-4064.29Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A7X5J7U8_9HYPH1.770e-4061.47Sec translocon accessory complex subunit YajC n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12413contigP-wetherbeei_contig12413:978..1310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog631454.N177_3621
Preferred nameyajC
PFAMsYajC
Model size333
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03210
KEGG TC3.A.5.1,3.A.5.2
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.41e-39
EggNOG OGsCOG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,2UBZ6@28211|Alphaproteobacteria,1JP8C@119043|Rhodobiaceae
DescriptionPreprotein translocase subunit
Cds size333
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.3952496-CDS-P-wetherbeei_contig12413:977..13101683185948.3952496-CDS-P-wetherbeei_contig12413:977..1310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12413 978..1310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12413.2.1prot_P-wetherbeei_contig12413.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12413 978..1310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12413.2.1

>prot_P-wetherbeei_contig12413.2.1 ID=prot_P-wetherbeei_contig12413.2.1|Name=mRNA_P-wetherbeei_contig12413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MLITPAFAQGTSAFGGDVLGNLLPIILMFVIFYFLLFRPQQQRMKALREM
LANVRRGDSIVTSGGLIGKITKVIDDREVEVEIAPDTRVRIVRSMIAEVR
TKSEPVKDGA*
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mRNA from alignment at P-wetherbeei_contig12413:978..1310-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12413.2.1 ID=mRNA_P-wetherbeei_contig12413.2.1|Name=mRNA_P-wetherbeei_contig12413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig12413:978..1310- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCATCACTCCGGCCTTTGCGCAAGGCACCTCGGCTTTCGGCGGCGA TGTCCTGGGCAACCTGCTGCCCATCATATTGATGTTCGTCATCTTCTACT TCCTGCTGTTCCGGCCGCAGCAACAGCGCATGAAGGCACTCAGGGAAATG CTGGCCAACGTGCGGCGCGGCGATTCGATCGTCACGTCCGGCGGTTTGAT CGGCAAGATCACCAAGGTCATCGACGACCGCGAGGTCGAGGTGGAGATCG CCCCCGACACCCGCGTCAGGATCGTGCGGAGCATGATTGCGGAAGTTCGG ACCAAGAGCGAGCCGGTCAAGGACGGCGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12413:978..1310-

>mRNA_P-wetherbeei_contig12413.2.1 ID=mRNA_P-wetherbeei_contig12413.2.1|Name=mRNA_P-wetherbeei_contig12413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig12413:978..1310- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCATCACTCCGGCCTTTGCGCAAGGCACCTCGGCTTTCGGCGGCGA
TGTCCTGGGCAACCTGCTGCCCATCATATTGATGTTCGTCATCTTCTACT
TCCTGCTGTTCCGGCCGCAGCAACAGCGCATGAAGGCACTCAGGGAAATG
CTGGCCAACGTGCGGCGCGGCGATTCGATCGTCACGTCCGGCGGTTTGAT
CGGCAAGATCACCAAGGTCATCGACGACCGCGAGGTCGAGGTGGAGATCG
CCCCCGACACCCGCGTCAGGATCGTGCGGAGCATGATTGCGGAAGTTCGG
ACCAAGAGCGAGCCGGTCAAGGACGGCGCGTGA
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