mRNA_P-wetherbeei_contig54.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54.1.1
Unique NamemRNA_P-wetherbeei_contig54.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54contigP-wetherbeei_contig54:1584..3689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1710
Hectar predicted targeting categoryother localisation
Exons2
Cds size951
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.7178717-UTR-P-wetherbeei_contig54:1583..22231683186806.7178717-UTR-P-wetherbeei_contig54:1583..2223Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54 1584..2223 +
1683186806.7488573-UTR-P-wetherbeei_contig54:3570..36891683186806.7488573-UTR-P-wetherbeei_contig54:3570..3689Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54 3571..3689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.729482-CDS-P-wetherbeei_contig54:2223..23761683186806.729482-CDS-P-wetherbeei_contig54:2223..2376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54 2224..2376 +
1683186806.738548-CDS-P-wetherbeei_contig54:2772..35701683186806.738548-CDS-P-wetherbeei_contig54:2772..3570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54 2773..3570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54.1.1prot_P-wetherbeei_contig54.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54 2224..3570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54.1.1

>prot_P-wetherbeei_contig54.1.1 ID=prot_P-wetherbeei_contig54.1.1|Name=mRNA_P-wetherbeei_contig54.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
MPLSEYASGLGLPRCVLGARCPGRAVPADIMATEHHRAGPQIRRARVADI
CGQPRRLLLLQRSNCVRGVQPCTHRHDRGWRRPRNGPAERARSAATVFGF
APSSLSGVVMNPGHNFPFGQDYFRGMSPVPAEFGSGEERNGSNKRAAVPP
CCRTPLAGSAAAAAGGADGQQHYPHPDGVKICKALQRPENQNFCTIDVGK
FLGDLADARFRGVAVVVTPNWDGSPGDAAASVLAGGRDCIGNSVSGGKPN
GAFPFQVGCLDLNVVAGGRLCGTPTCSEDANWHQCIWWEGRQLNGHPFDV
SRIVLRMLFGRDGGDG*
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mRNA from alignment at P-wetherbeei_contig54:1584..3689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54.1.1 ID=mRNA_P-wetherbeei_contig54.1.1|Name=mRNA_P-wetherbeei_contig54.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2106bp|location=Sequence derived from alignment at P-wetherbeei_contig54:1584..3689+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTCCGTTGGGACGAGGGGCTATGGGCCGAATCGATTTCATTCCAACAC
TATCGACTGTTTTCTGAAACTATTTCGGAAGCCCGAAGATTGGTACATCC
CCGACCCTACGTTTTCTAACGAGCCTCGCCTTGGTCCGCCGGATACAGCA
ACAGTCGGGCGGGATTTAACTGGTCCAACGGTTGCAGGGTTTCGATTCCT
GTTTACAAGTAATAAGAGAGCTTGCGGAAATTGTGCAACAGGGATGGCGG
CAGGAAGACGAAGTCATCGGGGGCATCAACTGTCACTTCGCGTTTCTCTT
CTGGTCTACGCCGCCCTCGCACAGGGCGAGCAAATGAAACGCGTCGCTTC
CCCATCGCAGTCGAGAAGGTCGGCAGTAGAAATGTTTGTGCGCGCCCCAT
CTCTCGTGGCACGGTGCCCATTTGTCCGGCAAATTACCGGTGCGTCGAAA
CGGACAGCGTTTTATACAAGCGGAGCAAGTTCTCGACGCGATATGGCGGC
GAAGAAGCGCCGCTGCTCCCTCGGAATGCGAAAATACTTTTTATCGGGAA
TAGTCACATCCGTGGAACGGCCCAGGCTACCATCTGCGCAAATGCAGCAA
TGCTGGTCGACATCAAGGTTGCGGGCGACCCGGGCGGCGAATGCCTCTTT
CAGAATATGCGTCTGGACTCGGATTACCTCGCTGCGTGCTCGGCGCACGA
TGTCCGGGACGGGCCGTGCCCGCTGACATCATGGCCACTGAACACCACCG
CGCAGGACCACAAATACGGCGGGCTCGTGTGGCCGACATTTGTGTAAGTG
TCGACGGTGCATCTTCTTGTCCTTTTTTTCTCGTATTATTTCATGTATCA
TATTAACTGTCCAGCTGAGCAACCCCTTCCTGCCTTCCTGCGCATCCATT
TTCTCTCCAAGCTGTCCATCCTACTACCTGCCTTTTCCTTTTGCAACTAC
TTCCTACTATCATGCATGGCCTAGGCCTGGGCGGGCCGCCACCGGCGCCG
TTGTTTGGCCCCCATGTCTTTCTCGCTCCTCTCGGCCGTTAAACATGTTC
TTCCGCGGTTTGGTCTACACTCTAGCGATGTCTCCTTCTTGCTCAATATT
GCACGCCTGTATTGCCAATTCTGTGTCTAGCTGCGGAGGCTGATTTCATT
TTCCCGGAGGTCCTTCCGCCCGTTTCCTTTGGTCAACAGGGACAACCTCG
GCGCCTACTACTTCTCCAACGGAGCAACTGTGTACGTGGCGTCCAACCAT
GCACTCACCGTCACGACAGAGGCTGGCGACGACCCCGCAACGGGCCGGCT
GAGCGGGCTAGATCAGCCGCCACTGTCTTTGGCTTCGCGCCGTCGTCGCT
GAGCGGAGTCGTTATGAACCCTGGCCACAACTTCCCGTTCGGGCAAGATT
ACTTCCGGGGAATGTCTCCCGTCCCTGCCGAATTTGGAAGCGGCGAGGAG
CGTAACGGGAGCAACAAGCGGGCCGCTGTGCCGCCGTGCTGCCGCACACC
GCTCGCCGGCAGCGCTGCCGCCGCTGCCGGCGGCGCCGACGGACAGCAGC
ACTACCCCCACCCGGACGGCGTGAAGATCTGCAAAGCGCTACAGCGGCCG
GAGAACCAGAACTTTTGCACCATCGATGTCGGGAAGTTTCTGGGGGACCT
CGCGGACGCCAGGTTCAGAGGAGTGGCTGTCGTCGTAACCCCGAACTGGG
ACGGCTCTCCGGGCGACGCTGCCGCATCCGTTCTGGCCGGCGGCCGCGAC
TGCATCGGCAACAGCGTCAGCGGCGGCAAGCCGAACGGCGCGTTCCCGTT
CCAGGTGGGCTGCTTGGACCTTAACGTCGTGGCGGGGGGCAGATTATGCG
GGACGCCGACCTGCTCGGAAGACGCCAATTGGCACCAGTGCATCTGGTGG
GAGGGCAGGCAACTGAATGGCCACCCTTTCGATGTGTCGCGGATTGTGCT
ACGCATGCTCTTCGGACGAGACGGCGGCGACGGCTGAGGTGACGGCGGCG
AAGAAATGCAACCATGTTGTCCATGAGCACATGGAGAGCATGCTAGTGCA
CAATAGCAAGTGGCGGCAGTGGCGGCTGCGCGAGCGGCGAGGACGGCGCC
CGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54:1584..3689+

>mRNA_P-wetherbeei_contig54.1.1 ID=mRNA_P-wetherbeei_contig54.1.1|Name=mRNA_P-wetherbeei_contig54.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig54:1584..3689+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCTTTCAGAATATGCGTCTGGACTCGGATTACCTCGCTGCGTGCT
CGGCGCACGATGTCCGGGACGGGCCGTGCCCGCTGACATCATGGCCACTG
AACACCACCGCGCAGGACCACAAATACGGCGGGCTCGTGTGGCCGACATT
TGTGGACAACCTCGGCGCCTACTACTTCTCCAACGGAGCAACTGTGTACG
TGGCGTCCAACCATGCACTCACCGTCACGACAGAGGCTGGCGACGACCCC
GCAACGGGCCGGCTGAGCGGGCTAGATCAGCCGCCACTGTCTTTGGCTTC
GCGCCGTCGTCGCTGAGCGGAGTCGTTATGAACCCTGGCCACAACTTCCC
GTTCGGGCAAGATTACTTCCGGGGAATGTCTCCCGTCCCTGCCGAATTTG
GAAGCGGCGAGGAGCGTAACGGGAGCAACAAGCGGGCCGCTGTGCCGCCG
TGCTGCCGCACACCGCTCGCCGGCAGCGCTGCCGCCGCTGCCGGCGGCGC
CGACGGACAGCAGCACTACCCCCACCCGGACGGCGTGAAGATCTGCAAAG
CGCTACAGCGGCCGGAGAACCAGAACTTTTGCACCATCGATGTCGGGAAG
TTTCTGGGGGACCTCGCGGACGCCAGGTTCAGAGGAGTGGCTGTCGTCGT
AACCCCGAACTGGGACGGCTCTCCGGGCGACGCTGCCGCATCCGTTCTGG
CCGGCGGCCGCGACTGCATCGGCAACAGCGTCAGCGGCGGCAAGCCGAAC
GGCGCGTTCCCGTTCCAGGTGGGCTGCTTGGACCTTAACGTCGTGGCGGG
GGGCAGATTATGCGGGACGCCGACCTGCTCGGAAGACGCCAATTGGCACC
AGTGCATCTGGTGGGAGGGCAGGCAACTGAATGGCCACCCTTTCGATGTG
TCGCGGATTGTGCTACGCATGCTCTTCGGACGAGACGGCGGCGACGGCTG
A
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