mRNA_P-wetherbeei_contig12413.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A7C4TQU7_9HYPH (Protein translocase subunit SecD n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TQU7_9HYPH) HSP 1 Score: 268 bits (685), Expect = 2.930e-83 Identity = 136/271 (50.18%), Postives = 194/271 (71.59%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDI-KGEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+FS+ ++ L +L+CL + L A+PNFF KE V WP F+PK+Q+ALGLDL+GGAHLLLAMDTEALR+ W++ L R L ++ K FT +G + V +RL D +A +RE+RKLN+++GS L+GT +N ++ KGEG +T+ PT G+++RI+ A SAALET+RRRVD +GT+E IVRQG DRILVQVPG++DT LK +IG TA L+FH+VH ++ ++ ++ R +GY+I+PA EK + +YLL+ P+V G+D
Sbjct: 1 MLHFSQARMILISLICLVAFLFAMPNFFPKETVERWPNFLPKRQLALGLDLRGGAHLLLAMDTEALRKDWIATLRDDARKQL-----RDAKIPFTAVGTTPTAVQIRLAKPEDADAAVRELRKLNQSLGSLLLGTESNSIEVEKGEGGLLTLQPTPQGLSNRISGAASAALETVRRRVDIIGTTEPLIVRQGSDRILVQVPGFDDTRRLKELIGNTAKLSFHEVHPQMTAEEARATRVPIGYKIYPAAEKNE----AAYLLRETPVVPGDD 262
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A1E4CUJ3_9HYPH (Protein translocase subunit SecD n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CUJ3_9HYPH) HSP 1 Score: 260 bits (665), Expect = 3.050e-80 Identity = 137/271 (50.55%), Postives = 188/271 (69.37%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDI-KGEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+FSRLK+ L CL S+L A+PN F+KEQ+A+WP F+P KQM LGLDL+GGAHLLLAMDTE LR++WL L R L ++ K TG+G+ N+ V VRL + +A +RE+RKL + +GSA++GTS I KGEG I +AP G+ R+ A AA+ET+ RR+++LGTSE+++VRQG DRILVQ PG DT LK ++G+TA L+FH+VH T++ ++ + GR GYRI+P E+ D GA +YLL+ P+V GE+
Sbjct: 1 MLHFSRLKMIAVLLTCLVSILFALPNLFTKEQLASWPRFLPTKQMPLGLDLQGGAHLLLAMDTEELRREWLQTLRDDARRTL-----RDAKIFPTGVGIVNNQVQVRLAKPEEADAAVRELRKLIQPLGSAVLGTSGEDLAITKGEGGTILLAPPPPGLQQRVVHAAGAAIETVNRRINALGTSESTVVRQGADRILVQYPGLTDTKVLKDLLGQTAKLSFHEVHPTMTAEEARQGRIPPGYRIYPGSERGDEQGA-AYLLRETPVVPGEN 265
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A6N6SSQ1_9HYPH (Protein translocase subunit SecD n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SSQ1_9HYPH) HSP 1 Score: 249 bits (636), Expect = 5.940e-76 Identity = 133/271 (49.08%), Postives = 184/271 (67.90%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIK-GEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+FS K L CL LL PNFF+KE V +WP + P+ Q+ LGLDL+GGAHLLL+M+T +R+ WL L R L +E K FTG+G+ N+ V +RL D +A ++E+R L + +GSAL+GT+ +IK G+G IT+ PT+AG+ RI +AI AA+ET+RRRVD++GT+E +IVRQGRDRILVQVPG +DTA LK +IG+TA L FH+VH +S +D + R G+RI+PA ++ D G LL+ P+VRG++
Sbjct: 1 MLHFSTWKQVAIILTCLIGALLVAPNFFAKETVRSWPAWTPRAQLNLGLDLRGGAHLLLSMETAEVRKDWLDTLRDDARKRL-----REAKIAFTGLGITNNIVQIRLAKPEDADAAMKELRGLAQPMGSALLGTTGMDVEIKKGDGGVITITPTEAGLQQRIGNAIGAAIETVRRRVDAMGTTEPNIVRQGRDRILVQVPGLQDTAQLKELIGKTARLTFHEVHPQMSAEDARQTRVPPGFRIYPATDRED----GPQLLRETPVVRGDE 262
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: UPI0019B92208 (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019B92208) HSP 1 Score: 248 bits (633), Expect = 1.660e-75 Identity = 129/271 (47.60%), Postives = 181/271 (66.79%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ-ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+F R KI L CL ++ +PNFFSKE V +WPG++P KQ+ LGLDL+GGAHLLLAMDT+ L + WL+ L R L +E K FTG+GV + V V++ DL+ ++KL + IG++++G+ + + GT IT+APT G+ R++SA SAA+ET+ RRV+++GT+E+++VRQG DRILVQ PG +DT LK +IG+TA L FH VH IS ++ + R +GY++FP+ E ADR SY+LQ PIV GED
Sbjct: 1 MLHFERWKIIAIVLTCLAGVIFTLPNFFSKETVDSWPGWVPHKQLPLGLDLRGGAHLLLAMDTKELEKDWLNTLRDDTRKTL-----REAKIGFTGLGVVGNSVQVKVTKPEDLDKATAALKKLIQPIGNSILGSGGSDLTVDTSGTDTITLAPTQQGMQHRVSSASSAAIETVNRRVNAMGTAESTVVRQGSDRILVQFPGLQDTKQLKDLIGQTAKLTFHAVHPDISAEEAKQTRVPVGYKVFPSVESADR----SYVLQESPIVSGED 262
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A2S5PC73_HYPSQ (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PC73_HYPSQ) HSP 1 Score: 248 bits (632), Expect = 2.830e-75 Identity = 136/274 (49.64%), Postives = 178/274 (64.96%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRR-KEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ---ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+FSR K+ C+ + L A+PNFF+KE V WP F+PKKQ+ALGLDL+GGAHLLL MDT L+ WL L R L E + +E K F+ V GV VR+ D E LRE+RKL + IG A+ G S N D+ +GT+ IT+ PT+ G+ +R+T A+SAA+ETI RR++SLGT+EA++VRQGRDRIL+Q PG +DT LK +IG+TA L FH VH S ++ + R GY+IF D RG G +LLQ P+V GED
Sbjct: 1 MLHFSRWKVISILAACVMAGLFALPNFFAKETVVGWPSFLPKKQLALGLDLRGGAHLLLGMDTSELKTDWLKALREDTRRTLLELNKGREQKIAFSPATVTGGGVQVRITKPEDAETALRELRKLVQPIGGAVFGGSGNDIDVT-QGTEPGLITLKPTEPGLFNRVTLAMSAAIETINRRINSLGTAEATVVRQGRDRILIQYPGLQDTKELKELIGKTAKLTFHAVHPQTSAEEAKLTRVPNGYKIFAGDR---RGEQGEFLLQEAPVVSGED 270
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: UPI00037BAD8A (protein translocase subunit SecD n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00037BAD8A) HSP 1 Score: 247 bits (631), Expect = 3.630e-75 Identity = 129/272 (47.43%), Postives = 186/272 (68.38%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIK--GEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+F R KI CL LL A+PNFFSKE VA+WP F+PK+QM LGLDL+GGAHLLLA+D +R+ WL++L R L +E K F+ IGV+ V +RL D E L+E++KL + IG+A++GTS N +++ E I + PT G+ +R+++A SA++ET+ RRV++LGT+E+++VRQGRDRILVQ PG DT LK +IG+TA L+FH VH TI+ ++ ++ R +GYR++PA E+ + G Y+L P+V+G+D
Sbjct: 1 MLHFERWKIFAIVATCLLGLLFALPNFFSKETVASWPSFIPKRQMPLGLDLRGGAHLLLALDQNEIRKDWLANLREDSRKTL-----REAKIGFSAIGVSGDAVQIRLVKPEDTETALKELKKLVQPIGNAILGTSGNDVEVEKGAEPGLILLKPTQFGMQERLSNAASASIETVNRRVNALGTAESTVVRQGRDRILVQYPGLTDTKQLKDLIGKTAKLSFHAVHPTITAEEAKTTRPPMGYRVYPAAER-EAGFEQGYVLAETPVVQGDD 266
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A6I3KDT1_9HYPH (Protein translocase subunit SecD n=2 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KDT1_9HYPH) HSP 1 Score: 247 bits (630), Expect = 4.430e-75 Identity = 125/270 (46.30%), Postives = 178/270 (65.93%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
ML+F R KI LVCL +L VPNFFSK+ V +WPG++P +Q+ LGLDL+GGAHLLLAMDT+ L + WL+ L R L +E K FTG+GV + V V++ +++ ++KL IG+A++G+ N + G IT+ PT G+ R++SA SAA+ET+ RRV+++GTSE+++VRQG DRILVQ PG +DT LK +IG+TA L FH VH IS ++ + R+ +GY+++P+ E R SY+LQ P+V GED
Sbjct: 1 MLHFERWKIIAVVLVCLAGVLFTVPNFFSKQTVDSWPGWLPHRQLPLGLDLQGGAHLLLAMDTKELEKDWLTTLRDDTRRQL-----REAKVGFTGLGVVGNSVQVKITKPEEMDKATEAVKKLVTPIGNAILGSGGNDITVASSGDTITVTPTQQGMQHRVSSAASAAIETVNRRVNAMGTSESTVVRQGTDRILVQFPGLQDTKQLKDLIGQTAKLTFHSVHPDISAEEAKQTRTPVGYKVYPSTEADGR----SYVLQETPVVSGED 261
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A2W4KS58_9PROT (Protein translocase subunit SecD (Fragment) n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KS58_9PROT) HSP 1 Score: 238 bits (608), Expect = 3.180e-74 Identity = 128/271 (47.23%), Postives = 182/271 (67.16%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIK--GEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGE 807
ML+F K+ L CL ++ A+PN FSKE V +WP +MPK+Q++LGLDL+GGAHLLLAMD +R+ WL + R L + R FTG+G+ + VVVR+ ++A L+E+R L + IG+ L+G+ + ++ E I + PT+AG+ RI++A+ A++ET+RRR+D+LGTSEAS+VRQG DRILVQ PG +DT+ LK +IGETA L+FH+VH +IS Q+ Q R GYRI+P+ AD G YLL+ P+VRG+
Sbjct: 1 MLHFQTWKVVGVILTCLLGVIFALPNLFSKETVESWPDWMPKRQLSLGLDLRGGAHLLLAMDVNDVRKDWLESIREDARRRLRDAR-----IGFTGLGIQGNSVVVRIAQPDQMDAALKELRGLVQPIGNPLLGSVGDDISVQRGNEPGLIVLQPTEAGMQQRISNAVGASIETVRRRIDTLGTSEASVVRQGSDRILVQFPGLQDTSQLKALIGETARLSFHEVHPSISGQEAQISRPPPGYRIYPS---ADDDGF-VYLLRETPVVRGD 262
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A2S5M4Y5_HYPSQ (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5M4Y5_HYPSQ) HSP 1 Score: 243 bits (621), Expect = 1.040e-73 Identity = 129/273 (47.25%), Postives = 184/273 (67.40%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ---ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
MLYFSR KI L CL L+ A PNF SKE +A+WP F+P K + LGLDL+GGAHLLLAMD + +R+ WL +L R +L ++ K F+G+G+ S + ++L D A L E+RKL + +G+A++GTS N ++ EGT I M P+DAG+ R+ +A ++++ET+ RR+++LGTSE+++VRQG DRIL+Q PG DT LKR+IGETA L FH+VH + S +D + + +GY+++P D A G G YLL+ PIV+GED
Sbjct: 1 MLYFSRFKIIAILLTCLAGLVAASPNFLSKETLAHWPTFLPSKPLPLGLDLQGGAHLLLAMDQDEIRKDWLDNLRDSARKSL-----RDAKIGFSGLGIQGSQLQIKLAKPEDRAAALTELRKLIQPLGNAVLGTSGNDIEVN-EGTDANTILMKPSDAGMKARVLNAAASSIETVNRRINNLGTSESTVVRQGVDRILIQFPGLSDTKELKRLIGETAKLTFHEVHPSTSVEDAKLTAAPIGYKVYPGD--ASEG--GEYLLRETPIVQGED 263
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A7Y4XIW2_HYPSQ (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XIW2_HYPSQ) HSP 1 Score: 243 bits (619), Expect = 2.060e-73 Identity = 128/275 (46.55%), Postives = 191/275 (69.45%), Query Frame = 1
Query: 1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ---ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPA--DEKADRGGAGSYLLQVDPIVRGED 810
ML+FSR+KI L CL ++ A+PNFF+K+ VA WP F+P++QM LGLDL+GGAHLLLAMD E +++ W+++L VR +L ++ K F+G+G+ + + VRL D +A L+E+RKL + IG+A++G+S N DI EGT+ I + PTD G+ RI+SA ++++ET+ RR+++LGTSE+S+VRQG DRIL+Q PG ++T+ LK++IGETA L FH+VH + S +D + GY+I+ DE +G +LL+ P+V GED
Sbjct: 1 MLHFSRMKILAIVLTCLAGIVFALPNFFAKDVVAKWPSFVPRQQMNLGLDLQGGAHLLLAMDQEEIKKDWVTNLRDSVRRSL-----RDAKIGFSGLGIQGTQLQVRLAKPEDKDAALKELRKLIQPIGNAILGSSGNDLDIS-EGTEPGTINLKPTDQGMKARISSAAASSIETVNRRINNLGTSESSVVRQGTDRILIQFPGLKETSELKKLIGETAKLTFHEVHPSTSAEDAKLTAVPPGYKIYAGTGDE------SGDFLLRETPVVPGED 263 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12413.1.1 >prot_P-wetherbeei_contig12413.1.1 ID=prot_P-wetherbeei_contig12413.1.1|Name=mRNA_P-wetherbeei_contig12413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDback to top mRNA from alignment at P-wetherbeei_contig12413:2..811- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12413.1.1 ID=mRNA_P-wetherbeei_contig12413.1.1|Name=mRNA_P-wetherbeei_contig12413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig12413:2..811- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12413:2..811- >mRNA_P-wetherbeei_contig12413.1.1 ID=mRNA_P-wetherbeei_contig12413.1.1|Name=mRNA_P-wetherbeei_contig12413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig12413:2..811- (Phaeothamnion wetherbeei SAG_119_79)back to top |