mRNA_P-wetherbeei_contig5396.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5396.2.1
Unique NamemRNA_P-wetherbeei_contig5396.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5396.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5396contigP-wetherbeei_contig5396:829..3215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1654
Hectar predicted targeting categorysignal peptide
Exons3
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.312017-UTR-P-wetherbeei_contig5396:828..16251683186806.312017-UTR-P-wetherbeei_contig5396:828..1625Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5396 829..1625 -
1683186806.3465195-UTR-P-wetherbeei_contig5396:3198..32151683186806.3465195-UTR-P-wetherbeei_contig5396:3198..3215Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5396 3199..3215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186806.3205369-CDS-P-wetherbeei_contig5396:1625..21241683186806.3205369-CDS-P-wetherbeei_contig5396:1625..2124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5396 1626..2124 -
1683186806.328583-CDS-P-wetherbeei_contig5396:2538..26691683186806.328583-CDS-P-wetherbeei_contig5396:2538..2669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5396 2539..2669 -
1683186806.3380265-CDS-P-wetherbeei_contig5396:2988..31981683186806.3380265-CDS-P-wetherbeei_contig5396:2988..3198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5396 2989..3198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5396.2.1prot_P-wetherbeei_contig5396.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5396 1626..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5396.2.1

>prot_P-wetherbeei_contig5396.2.1 ID=prot_P-wetherbeei_contig5396.2.1|Name=mRNA_P-wetherbeei_contig5396.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MHLKLTGSLHTLALLLWERGKLGQALPLLCRVTYILAGSLGEEHPRYAAA
LNDVALLLKQAGNLQDAEPLLWRSLEIIEKSYGREHPLYATGLYNISCLM
ISLGRDEEAEAMLREAVSLSEPEVGSDHADVLRFKSALAAVLRQRRRLRE
ARDLYAHVARESRGGCARLYWGAKRQLDEIDRLIAAGGADAEDSADGFDG
VSDSSSGECVVAVAADAGGCRAGGGGGGSGCGGSGGDGGIGGVGQSGDAG
CGCSGGVGGMSGAGSISGSGGGSGGAGRR*
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mRNA from alignment at P-wetherbeei_contig5396:829..3215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5396.2.1 ID=mRNA_P-wetherbeei_contig5396.2.1|Name=mRNA_P-wetherbeei_contig5396.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2387bp|location=Sequence derived from alignment at P-wetherbeei_contig5396:829..3215- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGACGTACGGCGAGATGCACCTAAAGCTGACGGGCTCCCTCCACACG
CTGGCGTTGCTGCTGTGGGAGCGCGGCAAGCTCGGGCAGGCGCTGCCATT
GTTGTGCCGCGTCACATACATCTTGGCGGGGTCGCTTGGGGAGGAGCACC
CGCGCTACGCCGCCGCGCTCAACGACGTGGCACTGCTGCTCAAGCAGGCG
GGCAATCTGCAGGACGCCGAGCCACTGGTGAGCGGCTTGGACGAGGGACG
AGGCGAGGGAAGGGAACGGCAGCTATATGTGGAATTAGAGGCTCGCTCTG
TCGCGGGGGAAAAAGGAGGGCTTCGGAGCAACTTTTTTATTCTTTTCCGG
TGCTGGCTGCCACCAGCGCCGCCGCTGCCGTCGCTGGTGGCGATGTCGAC
GTTGTCGTCGTTGTTTGGTGCTGCCGCTGTCGCTACTGCTGCGGCCGCTG
CTGCTGCTGACGCCATCTCTCGACGCCTTCCGCGCAACCTACCTCACCGC
CCGTCCACTCTTTGCCCTGCCCCGCGGCTGCCTCTGCCCGTTGCAGCTGT
GGCGCAGCCTGGAGATTATCGAAAAGTCATACGGTCGGGAGCACCCGCTG
TACGCGACGGGGCTCTACAATATCTCCTGCCTAATGATCAGCTTGGGTCG
CGACGAGGAGGCCGAGGCCATGCTCAGGTGATTCGTGTTAGAGATGCGAA
CTCACGTGCCGCCAGTGATGATGGGCGGCGAGCAGCCCGGTTTTGTTGCA
AGCGAATTGGTTCAAGTGTTTCGATATTAACGCGCGCTTGTTTAGAGGGC
GAGGCATTGGTTTTGGTTCTTGCGGCGATCGGCGGACGGTCGATGGTGTT
TTTGCCGCTGCGACTCGGAGTACGTCATTGTTGCTTCATTCTATTCTGCA
GCAGCCGTTCTTTCAATCCGCGGATGTTTTGTCCATCAGCGTCTTCCATC
AAATTTGCCGTCCAGCCACAGCCGTTGCCACCGGTTCTATGGTCATCTTC
GCCTCCTCATATTGCTGCAACTCGATCGACCTTCCGGCTCGTCAAATCCT
GCTGCTCCCTGCTTTTCCTGTCGCTCTGCTGGCACCTGCAGGGAGGCTGT
GTCGCTGTCGGAGCCCGAGGTCGGGTCCGACCACGCGGACGTCTTGCGCT
TCAAGTCTGCGCTGGCGGCGGTGCTACGGCAGCGCCGGCGGTTGCGCGAG
GCCCGCGACCTCTACGCCCACGTCGCACGCGAGTCGCGCGGCGGGTGCGC
CCGCCTCTACTGGGGCGCCAAACGCCAGCTCGACGAGATTGACCGCCTGA
TTGCTGCGGGCGGCGCCGATGCCGAGGACAGTGCCGACGGTTTCGATGGC
GTTAGCGACAGCAGCAGCGGTGAGTGCGTTGTCGCTGTTGCGGCTGATGC
TGGGGGCTGCCGCGCTGGCGGCGGTGGCGGCGGCAGCGGCTGCGGCGGCA
GTGGTGGCGATGGCGGCATCGGCGGTGTCGGTCAATCCGGCGACGCGGGC
TGCGGCTGCAGCGGTGGCGTTGGCGGGATGAGCGGAGCTGGCAGCATTAG
CGGAAGTGGTGGCGGTAGCGGCGGTGCCGGCCGCCGCTAACGCAAAACGG
CACCGGTGAGACGGCGGTCCCAAATGCCAATCACGATTGTTCAGGCGCCA
TGGGCGCTCGGCGCGGTGGGGACTGGACCCCACGCACCTTTGACGTGCCC
GAAAGGCGCACAATTCATTGATGGCGGATAGAGCGCCAAGGAAGGGGCGG
GGGGAGTATAGTTATCGAAGGGAAGAGGAATGGAGGCTGTTCGTTGGGCA
TGTTCCATTCGGCAAGAGAGATGGGCAATAGCTATCTTGTGGTGCGGCAG
CGTCAAGAGCCAATCATTGCATAGCATGATAGGGATCGCGGGGAAGCGGC
ACCAGAACCGCCTGTATAGTAGCCTTCCGGAATATGTATGTACCAAAAGA
ACAGTTGCAACACGCCGCGACTCGCCGGCAGCGGCGGAGAAACAGAAGAC
GCGTCCGGAGGAACGGGCGGTTGTTGCACAGCACAGAAACCACCACCACT
CACGATCGGCGCCTGGGGCGGGCGGCAGCGGCGGAGTTGGAAAATGGAAC
TTTCCATAATGTCGGCGGCGCCATCGCGCCGTTGCCGGCGGCGCTGTGCC
GTGCCACGGGAGCATTTCATGTAGAGGCGTGGCACAAAAGACTGGCAGCG
GGGCGATAATTGGTTTGGAGGACAGTGGCGGGAGCGGGAAAACGATGGGG
ACGAGCTGGCCGCCAAAGGAAGCAGAAACAAGGAGAGAGTGCGTCAGCAC
CATGGGCGCGCACTGTAGAGAAGCTACGCTGCTGGGGGAAAGTGCATTCT
TAGTGGGTTTACTACATACAAATGTCGTTGCGCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5396:829..3215-

>mRNA_P-wetherbeei_contig5396.2.1 ID=mRNA_P-wetherbeei_contig5396.2.1|Name=mRNA_P-wetherbeei_contig5396.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig5396:829..3215- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCTAAAGCTGACGGGCTCCCTCCACACGCTGGCGTTGCTGCTGTG
GGAGCGCGGCAAGCTCGGGCAGGCGCTGCCATTGTTGTGCCGCGTCACAT
ACATCTTGGCGGGGTCGCTTGGGGAGGAGCACCCGCGCTACGCCGCCGCG
CTCAACGACGTGGCACTGCTGCTCAAGCAGGCGGGCAATCTGCAGGACGC
CGAGCCACTGCTGTGGCGCAGCCTGGAGATTATCGAAAAGTCATACGGTC
GGGAGCACCCGCTGTACGCGACGGGGCTCTACAATATCTCCTGCCTAATG
ATCAGCTTGGGTCGCGACGAGGAGGCCGAGGCCATGCTCAGGGAGGCTGT
GTCGCTGTCGGAGCCCGAGGTCGGGTCCGACCACGCGGACGTCTTGCGCT
TCAAGTCTGCGCTGGCGGCGGTGCTACGGCAGCGCCGGCGGTTGCGCGAG
GCCCGCGACCTCTACGCCCACGTCGCACGCGAGTCGCGCGGCGGGTGCGC
CCGCCTCTACTGGGGCGCCAAACGCCAGCTCGACGAGATTGACCGCCTGA
TTGCTGCGGGCGGCGCCGATGCCGAGGACAGTGCCGACGGTTTCGATGGC
GTTAGCGACAGCAGCAGCGGTGAGTGCGTTGTCGCTGTTGCGGCTGATGC
TGGGGGCTGCCGCGCTGGCGGCGGTGGCGGCGGCAGCGGCTGCGGCGGCA
GTGGTGGCGATGGCGGCATCGGCGGTGTCGGTCAATCCGGCGACGCGGGC
TGCGGCTGCAGCGGTGGCGTTGGCGGGATGAGCGGAGCTGGCAGCATTAG
CGGAAGTGGTGGCGGTAGCGGCGGTGCCGGCCGCCGCTAA
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