mRNA_P-wetherbeei_contig53905.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53905.1.1
Unique NamemRNA_P-wetherbeei_contig53905.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: A0A5A7W3Y3_9BRAD (Lytic transglycosylase domain-containing protein n=2 Tax=Tardiphaga sp. P9-11 TaxID=2024614 RepID=A0A5A7W3Y3_9BRAD)

HSP 1 Score: 275 bits (702), Expect = 6.840e-86
Identity = 139/177 (78.53%), Postives = 156/177 (88.14%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERRAL+R+LLD+GKARLAYRVA +AAP+KETYRVDRAFMAGWIALRFLR+PQTATQ+FA I  IT+GPTALARA YWLGRAA+A RN+P+AQQHYALAA H TTYYGQLACARLGCR  KLRTPPTLTQAQR  L  RE VRAVEILY TGNR+LVVPFV  L +A+D  LLA++
Sbjct:  301 WVERRALVRSLLDEGKARLAYRVAQEAAPEKETYRVDRAFMAGWIALRFLRDPQTATQHFAGIPNITRGPTALARAQYWLGRAADAGRNRPAAQQHYALAAEHGTTYYGQLACARLGCRKAKLRTPPTLTQAQRVTLAGRELVRAVEILYGTGNRRLVVPFVGDLTRASDTTLLAMI 477          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: A0A257KR50_9BRAD (Murein transglycosylase n=1 Tax=Bradyrhizobiaceae bacterium PARB1 TaxID=2015576 RepID=A0A257KR50_9BRAD)

HSP 1 Score: 268 bits (686), Expect = 1.330e-83
Identity = 135/177 (76.27%), Postives = 158/177 (89.27%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERRAL+R+LLDDGKA+LAYR+A +AAPDKETYRVDRAFMAGWIALRFLR+PQTAT++F +I A+T+GPTALARA YWLGRAAEA RN+ SAQQHYALAA+H TTYYGQLACAR+GCR T+LRTPP LT+ QRA   +RE VRAVEILYA+GNR+LVVPFV  L ++ND  LLA+V
Sbjct:  292 WVERRALVRSLLDDGKAKLAYRLAQEAAPDKETYRVDRAFMAGWIALRFLRDPQTATRHFNEIPALTRGPTALARAQYWLGRAAEAGRNRGSAQQHYALAAQHGTTYYGQLACARIGCRHTRLRTPPVLTRTQRATFANREVVRAVEILYASGNRRLVVPFVGDLHRSNDTALLAMV 468          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: UPI001BAE523B (lytic transglycosylase domain-containing protein n=1 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BAE523B)

HSP 1 Score: 263 bits (673), Expect = 1.010e-81
Identity = 132/177 (74.58%), Postives = 154/177 (87.01%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERRAL+R+LLDDGKARLAYR+A +AAPDKETYRVDRAFMAGWI+LRFLR+ QTAT++F +I  +T+GPTALARA YWLGRAAEA RN+PSAQQHY LAA+H TTYYGQLACAR+GCR TK+R  PTLT AQRA   +RE VRAVEILY +GNR+LVVPFV  L ++ND  LLA+V
Sbjct:  287 WVERRALVRSLLDDGKARLAYRLAAEAAPDKETYRVDRAFMAGWISLRFLRDAQTATRHFNEIPGLTRGPTALARAQYWLGRAAEAGRNRPSAQQHYTLAAQHGTTYYGQLACARIGCRNTKVRAAPTLTPAQRATFANRELVRAVEILYGSGNRRLVVPFVGDLHRSNDTALLAMV 463          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: UPI001E33DA3C (lytic transglycosylase domain-containing protein n=1 Tax=Rhodopseudomonas boonkerdii TaxID=475937 RepID=UPI001E33DA3C)

HSP 1 Score: 258 bits (660), Expect = 9.360e-80
Identity = 127/177 (71.75%), Postives = 157/177 (88.70%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERRAL+R+LLDDG+A+LAYR+A DAAP+KETYRVDR+FMAGWIALRFLR+PQTAT++F +I  +T+GPTALARA YWLGRAA+A RN+ +AQQHYALA++H TTYYGQLACAR+GCR T+LRTPP L+ AQR  L +R+ VRAVE+LYA+GNR+LVVPFV  L ++ND  LLA+V
Sbjct:  292 WVERRALVRSLLDDGQAKLAYRLAHDAAPEKETYRVDRSFMAGWIALRFLRDPQTATRHFNEIPGLTRGPTALARAQYWLGRAADAGRNRAAAQQHYALASQHGTTYYGQLACARIGCRHTRLRTPPALSPAQRTTLANRDLVRAVEVLYASGNRRLVVPFVGDLHRSNDTALLAMV 468          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: A0A4V1ZL72_9BRAD (Lytic transglycosylase domain-containing protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4V1ZL72_9BRAD)

HSP 1 Score: 247 bits (631), Expect = 1.300e-75
Identity = 126/177 (71.19%), Postives = 149/177 (84.18%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERRAL+R+LLDDG A+LAYR+A DAAPDKETYRVDR+FMAGWIALRFLR+  TAT++F++I  +T+GPTALARA YWLGRAAEA RN+ SAQQHYA AA H TTYYGQLACAR+GCR T+LR PP    A R A+  RE +RA+EILYA+GNR+LVVPFV  L ++ND  LLAVV
Sbjct:  276 WVERRALVRSLLDDGDAKLAYRLAHDAAPDKETYRVDRSFMAGWIALRFLRDHATATRHFSEIPGLTRGPTALARAQYWLGRAAEAGRNRASAQQHYARAAEHGTTYYGQLACARIGCRHTRLRAPPAPGAAARNAVTHRELLRAIEILYASGNRRLVVPFVGDLGRSNDTALLAVV 452          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: UPI001985B5FB (Lytic transglycosylase domain-containing protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI001985B5FB)

HSP 1 Score: 209 bits (532), Expect = 5.700e-61
Identity = 108/174 (62.07%), Postives = 130/174 (74.71%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLL 522
            W+ER AL R LLD G ARLAYR   DAAP K+TY+VDRAFM GWIALRFLR+P TA +NFA+I  +T  PT++ARA+YW+GR A+A  N  SA+QHY +AA HSTTYYGQLACARLGCR T LR PP+    ++A++  R+ +RA E+LY TGNRK VV F AGL    D  LL
Sbjct:  295 WVERGALARQLLDGGHARLAYRTVSDAAPAKDTYQVDRAFMMGWIALRFLRDPPTAEKNFARILTVTSQPTSVARAHYWMGRTAQARHNAKSARQHYQVAAEHSTTYYGQLACARLGCRDTHLRKPPS-ADVRQASIAQRDLLRAAELLYLTGNRKQVVAFAAGLGATADRALL 467          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: A0A0Q5ZC67_9BRAD (SLT domain-containing protein n=1 Tax=Bradyrhizobium sp. Leaf396 TaxID=1736363 RepID=A0A0Q5ZC67_9BRAD)

HSP 1 Score: 195 bits (495), Expect = 3.910e-56
Identity = 106/178 (59.55%), Postives = 130/178 (73.03%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAA-PDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERR L+R LLDDGKA++AYR+A DAA P +E+ RVD+ F AGWIALRFL  P  ATQ+FA+IA +T  PT+LARA YWLGRAAEA  ++  A+ HYA A+R +  YYGQLA ARLG R   L  PP+L   +RA L  R+ VRAVE+LYATGN  LV+PFVA L +  D  LL V+
Sbjct:  213 WVERRILVRRLLDDGKAQIAYRIARDAASPSRESLRVDQTFTAGWIALRFLNNPHLATQHFARIARMTTHPTSLARAAYWLGRAAEAGGDREKARGHYAAASRRTAAYYGQLASARLGRRDVSLPRPPSLGPRERANLSKRDLVRAVELLYATGNSDLVIPFVADLGRTADIGLLTVI 390          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: UPI001FD91607 (lytic transglycosylase domain-containing protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001FD91607)

HSP 1 Score: 193 bits (491), Expect = 1.820e-54
Identity = 105/178 (58.99%), Postives = 130/178 (73.03%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAA-PDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            W+ERR L+R LLDDGKA++AYR+A DAA P +E+ RVD+ F AGWIALRFL  P  A+Q+FA+IA +T  PT+LARA YWLGRAAEA  ++  A+ HYA A+R +  YYGQLA ARLG R   L  PP+L   +RA L  R+ VRAVE+LYATGN  LV+PFVA L +  D  LL V+
Sbjct:  411 WVERRILVRRLLDDGKAQIAYRIARDAASPSRESLRVDQTFTAGWIALRFLNNPHLASQHFARIARMTTHPTSLARAAYWLGRAAEAGGDREKARGHYAAASRRTAAYYGQLASARLGRRDVSLPRPPSLGPRERANLSKRDLVRAVELLYATGNSDLVIPFVADLGRTADIGLLTVI 588          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: A0A4Y3WG38_NITWI (Lytic transglycosylase n=2 Tax=Nitrobacter winogradskyi TaxID=913 RepID=A0A4Y3WG38_NITWI)

HSP 1 Score: 192 bits (487), Expect = 4.380e-54
Identity = 105/178 (58.99%), Postives = 131/178 (73.60%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAA-PDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLAVV 531
            WIERR L+R +LDDGKAR+AYR+A +AA P KE+ RVD+ F AGWIALRFL +P +ATQ+FA+I  IT  PT+LARA YWLGRAAE       A+++Y  AA+HS  YYGQLA ARLG R   +R PP L  A+R AL + + V AVE+LYATGNR LVVPFVA L +  D ++L ++
Sbjct:  365 WIERRILVRKMLDDGKARIAYRIARNAALPSKESLRVDQPFTAGWIALRFLHDPHSATQHFARIPQITTHPTSLARAGYWLGRAAETAGRASEARRYYKAAAQHSAAYYGQLARARLGRREIPVRRPPALDSARRMALRNVDLVHAVELLYATGNRDLVVPFVADLNRVGDVDVLTLI 542          
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Match: A0A4R3U390_9BRAD (Soluble lytic murein transglycosylase n=2 Tax=Bradyrhizobium sp. Y-H1 TaxID=2485167 RepID=A0A4R3U390_9BRAD)

HSP 1 Score: 189 bits (479), Expect = 1.170e-53
Identity = 102/176 (57.95%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    1 WIERRALIRALLDDGKARLAYRVAVDAA-PDKETYRVDRAFMAGWIALRFLREPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALAARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILYATGNRKLVVPFVAGLAQANDGNLLA 525
            W+ERR L+R LLDDGKA++AYR+A DAA P +E+ RVD++F AGWIALRFL +P  A Q+FA+I+ +T  PT+LARA YWLGRAAEA+ +   AQ +YA A+R +  YYGQLA ARLG R   L  PP L   +RA L   + VRAVE+LYATGN  LV+PFVA + ++ D  LLA
Sbjct:  233 WVERRILVRRLLDDGKAQIAYRIARDAASPSRESLRVDQSFTAGWIALRFLNDPDVAAQHFARISGMTTHPTSLARAAYWLGRAAEASGHSEKAQGYYAAASRRTAAYYGQLAGARLGRRAISLPRPPGLGPRERAKLSQNDLVRAVELLYATGNNDLVIPFVADVGRSADIGLLA 408          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53905.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7W3Y3_9BRAD6.840e-8678.53Lytic transglycosylase domain-containing protein n... [more]
A0A257KR50_9BRAD1.330e-8376.27Murein transglycosylase n=1 Tax=Bradyrhizobiaceae ... [more]
UPI001BAE523B1.010e-8174.58lytic transglycosylase domain-containing protein n... [more]
UPI001E33DA3C9.360e-8071.75lytic transglycosylase domain-containing protein n... [more]
A0A4V1ZL72_9BRAD1.300e-7571.19Lytic transglycosylase domain-containing protein n... [more]
UPI001985B5FB5.700e-6162.07Lytic transglycosylase domain-containing protein n... [more]
A0A0Q5ZC67_9BRAD3.910e-5659.55SLT domain-containing protein n=1 Tax=Bradyrhizobi... [more]
UPI001FD916071.820e-5458.99lytic transglycosylase domain-containing protein n... [more]
A0A4Y3WG38_NITWI4.380e-5458.99Lytic transglycosylase n=2 Tax=Nitrobacter winogra... [more]
A0A4R3U390_9BRAD1.170e-5357.95Soluble lytic murein transglycosylase n=2 Tax=Brad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53905contigP-wetherbeei_contig53905:3..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1304878.AUGD01000001_gene377
Preferred nameslt
PFAMsSLT
Model size531
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K08309
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.46e-56
EggNOG OGsCOG0741@1|root,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2TRDB@28211|Alphaproteobacteria,3JT9G@41294|Bradyrhizobiaceae
DescriptionTransglycosylase SLT domain
Cds size531
COG categoryM
CAZyGH23
BRITEko00000,ko01000,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.821663-CDS-P-wetherbeei_contig53905:2..5331683186805.821663-CDS-P-wetherbeei_contig53905:2..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53905 3..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53905.1.1prot_P-wetherbeei_contig53905.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53905 3..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53905.1.1

>prot_P-wetherbeei_contig53905.1.1 ID=prot_P-wetherbeei_contig53905.1.1|Name=mRNA_P-wetherbeei_contig53905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
WIERRALIRALLDDGKARLAYRVAVDAAPDKETYRVDRAFMAGWIALRFL
REPQTATQNFAQIAAITKGPTALARANYWLGRAAEANRNQPSAQQHYALA
ARHSTTYYGQLACARLGCRTTKLRTPPTLTQAQRAALGSREQVRAVEILY
ATGNRKLVVPFVAGLAQANDGNLLAVV
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mRNA from alignment at P-wetherbeei_contig53905:3..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53905.1.1 ID=mRNA_P-wetherbeei_contig53905.1.1|Name=mRNA_P-wetherbeei_contig53905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig53905:3..533- (Phaeothamnion wetherbeei SAG_119_79)
TGGATCGAACGCCGCGCGCTGATCCGTGCGCTGCTCGATGACGGCAAGGC GCGGTTGGCCTATCGCGTCGCGGTCGATGCGGCGCCGGACAAGGAAACCT ATCGCGTCGATCGCGCCTTCATGGCCGGCTGGATCGCCTTGCGCTTCCTG CGCGAGCCGCAGACGGCGACCCAAAACTTTGCGCAGATTGCCGCGATCAC GAAAGGCCCCACGGCACTGGCGCGGGCAAATTACTGGCTCGGCCGCGCTG CCGAAGCGAACCGCAATCAGCCCTCCGCGCAACAGCACTACGCATTGGCC GCACGGCATTCCACGACCTATTATGGCCAACTGGCCTGTGCCCGCCTCGG CTGCCGCACCACAAAGCTTCGGACGCCCCCGACCCTGACACAGGCGCAAC GCGCAGCTCTCGGCAGCCGCGAACAGGTCCGCGCTGTCGAGATTCTTTAT GCGACCGGCAATCGCAAGCTCGTGGTGCCTTTCGTCGCCGGTCTCGCACA GGCCAATGACGGCAACCTGCTGGCAGTGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53905:3..533-

>mRNA_P-wetherbeei_contig53905.1.1 ID=mRNA_P-wetherbeei_contig53905.1.1|Name=mRNA_P-wetherbeei_contig53905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig53905:3..533- (Phaeothamnion wetherbeei SAG_119_79)
TGGATCGAACGCCGCGCGCTGATCCGTGCGCTGCTCGATGACGGCAAGGC
GCGGTTGGCCTATCGCGTCGCGGTCGATGCGGCGCCGGACAAGGAAACCT
ATCGCGTCGATCGCGCCTTCATGGCCGGCTGGATCGCCTTGCGCTTCCTG
CGCGAGCCGCAGACGGCGACCCAAAACTTTGCGCAGATTGCCGCGATCAC
GAAAGGCCCCACGGCACTGGCGCGGGCAAATTACTGGCTCGGCCGCGCTG
CCGAAGCGAACCGCAATCAGCCCTCCGCGCAACAGCACTACGCATTGGCC
GCACGGCATTCCACGACCTATTATGGCCAACTGGCCTGTGCCCGCCTCGG
CTGCCGCACCACAAAGCTTCGGACGCCCCCGACCCTGACACAGGCGCAAC
GCGCAGCTCTCGGCAGCCGCGAACAGGTCCGCGCTGTCGAGATTCTTTAT
GCGACCGGCAATCGCAAGCTCGTGGTGCCTTTCGTCGCCGGTCTCGCACA
GGCCAATGACGGCAACCTGCTGGCAGTGGTC
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