mRNA_P-wetherbeei_contig5389.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5389.1.1
Unique NamemRNA_P-wetherbeei_contig5389.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: D7FT73_ECTSI (Similar to spermatogenesis associated factor SPAF n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT73_ECTSI)

HSP 1 Score: 587 bits (1513), Expect = 4.320e-196
Identity = 340/539 (63.08%), Postives = 389/539 (72.17%), Query Frame = 1
Query:    1 HRPPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQ-----------VAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTAL-RLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFY 1581
            H PPGTGKT+LARAAA ACG  VI VNG EL+SRFVGESE ALR+ F  A+  APCL+VFDEID LCPRRD A+S  +RR+VST+L+L+DGVDA  Q           V +IACTNRPQALDPALRRPGRLD E+E+GVPDA GR EIL ++L  +    + +    G E       S   G SG  + LAARTHGFVGADLQL+VKEAAL AL R  G     +    A  +        +     L  LT AD RAAL  V+PS LREVAVEVP V+WGDIGGM GVK  LREVVEWPLRHPEAF RMG+SPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKG PELLS+WLGESERA+QA+F+RARAAAPTIIFFDE+DA+A +RG      AGATERVLTQLLTELDGI+P++R+VVVAATNRPD++D ALLRPGRLDRLVYVPPPD+ SR EI R++LA     GD  V+  ALA  T G SGAE VA+CREA++ A+E                   +  QITPAVL  Y
Sbjct:  582 HGPPGTGKTTLARAAAKACGCHVIVVNGSELMSRFVGESEGALRQRFAEASRCAPCLIVFDEIDTLCPRRDQASSEAQRRVVSTMLALMDGVDAQEQFVRCPSARRREVVVIACTNRPQALDPALRRPGRLDSEVEIGVPDAAGRAEILEVLLRGVPHTMADANNSPGGEGGRGEANSK-SGPSGEVKELAARTHGFVGADLQLLVKEAALQALRRTRGGGNWGSISARAGCSDAGVEEGESTSAEGLPTLTAADFRAALPLVAPSGLREVAVEVPSVKWGDIGGMEGVKQSLREVVEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKG-PELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALACKRGGGGETGAGATERVLTQLLTELDGIQPVKRLVVVAATNRPDVIDPALLRPGRLDRLVYVPPPDVLSRREILRLSLAKVPCAGD--VEHEALARRTEGFSGAEVVALCREASICALEEDRSATQVRQAHLLEALGQMRPQITPAVLASY 1116          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: A0A4D9CZ55_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ55_9STRA)

HSP 1 Score: 518 bits (1334), Expect = 4.910e-173
Identity = 306/542 (56.46%), Postives = 372/542 (68.63%), Query Frame = 1
Query:    7 PPGTGKTSLARAAAA----ACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSR----LDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRIAL------ADDGDGGD-SGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAV-TRQITPAVLRFYE 1584
            P GTGKT+L RAAA       G  V+ V GPE+V R VGE+E+ LRR+F+ A A AP ++V DE++ALCPRR+AA+  ++RR+V+TLL+LLDG   L +V ++A T+RPQALDPALRRPGRLDRE+EVGVP    R EIL ++L   GL   ++ ++V                    +R+A+R HGFVGADL LV KEAA+ A+ R      G  G D                       +R+T  D+ AAL  V PSALREVAVEVPRV+WGDIGGM  VK  LRE VEWPL  PEAF RMGI+PP+GVLLYGPPGCSKTLMARALATESGMNFLAVKG PELLS+WLGESE+ALQ +F++ARAAAPT++FFDE+DA+AGRRG  E     A+ERVL+QLLTELDG++PLRRVVVVAATNRPDLLD ALLRPGR+DR VYVPPPDL SR EI +IAL      + +G+  + +G+D+  LA  T G SGAE VA+ REAAL A+E                  A   RQITP +L +Y 
Sbjct:  309 PSGTGKTTLLRAAAEYFGRGRGYHVMRVAGPEVVGRLVGETESRLRRVFREARARAPTVMVLDEVEALCPRREAASPDLDRRMVATLLALLDGFQGLDRVVVLAATSRPQALDPALRRPGRLDRELEVGVPGEAARGEILRVLLAGTGLESEVAADKVL-------------------QRVASRAHGFVGADLLLVCKEAAMLAVRRGMEAAGGGAGRDGGDP-------------------VRMTGEDLAAALALVRPSALREVAVEVPRVQWGDIGGMDRVKQSLRECVEWPLTRPEAFVRMGIAPPKGVLLYGPPGCSKTLMARALATESGMNFLAVKG-PELLSKWLGESEKALQGLFKKARAAAPTVVFFDEVDALAGRRGDGE--DCKASERVLSQLLTELDGVQPLRRVVVVAATNRPDLLDPALLRPGRIDRRVYVPPPDLASRREILKIALRGVPTESPEGEASEGAGLDLEELARRTEGFSGAEVVALSREAALCAVEEDPVHARLLRGRHFEQALAGWQRQITPRMLEYYR 809          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: W7TTL3_9STRA (Spermatogenesis-associated protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTL3_9STRA)

HSP 1 Score: 506 bits (1302), Expect = 7.580e-173
Identity = 295/515 (57.28%), Postives = 356/515 (69.13%), Query Frame = 1
Query:   76 VNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSR----LDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRIAL------ADDGDGGD-SGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAV-TRQITPAVLRFYE 1584
            V GPE+V R VGE+E+ LRR F+ A A AP ++V DE++ALCPRR+AA+S ++RR+V+TLL+LLDG   L +V ++A T+RPQALDPALRRPGRLDRE+EVGVP    R EIL ++L   GL    + ++V                    +R+A+R HGFVGADL LV KEAA+ A+ R      G  G D                       +R+T  D+ AAL  V PSALREVAVEVPRV+WGDIGGM  VK  LRE VEWPL  PEAF RMGI+PP+GVLLYGPPGCSKTLMARALATESGMNFLAVKG PELLS+WLGESE+ALQ +F++ARAAAPT++FFDE+DA+AGRRG  E     A+ERVL+QLLTELDG++PLRRVVVVAATNRPDLLD ALLRPGR+DR VYVPPPDL SR EI +IAL      + +G+  + +GVD+  LA  T G SGAE VA+ REAAL A+E                  A   RQITP +L +Y 
Sbjct:    3 VAGPEVVGRLVGETESRLRRAFREARARAPTVMVLDEVEALCPRREAASSDLDRRMVATLLALLDGFQGLDRVVVLAATSRPQALDPALRRPGRLDRELEVGVPGEAARGEILRVLLAGTGLESEAAADRVL-------------------QRVASRAHGFVGADLLLVCKEAAMLAVRRGMEAAGGGAGRDGGDP-------------------VRMTGEDLVAALALVRPSALREVAVEVPRVQWGDIGGMDRVKQSLRECVEWPLTRPEAFVRMGIAPPKGVLLYGPPGCSKTLMARALATESGMNFLAVKG-PELLSKWLGESEKALQGLFKKARAAAPTVVFFDEVDALAGRRGDGE--DCKASERVLSQLLTELDGVQPLRRVVVVAATNRPDLLDPALLRPGRIDRRVYVPPPDLASRREILKIALRGVPTESPEGEASEGAGVDLEELARRTEGFSGAEVVALSREAALCAVEEDPVHARLLRGRHFEQALAGWQRQITPRMLEYYR 476          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: K3W9Z8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Z8_GLOUD)

HSP 1 Score: 483 bits (1242), Expect = 1.240e-162
Identity = 269/531 (50.66%), Postives = 362/531 (68.17%), Query Frame = 1
Query:    7 PPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIF-----RIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            PPGTGKT +ARA AA     +  +NGPE+VS+++GESEA LR+IF+ AA + P L+  DEIDA+CP+RD     +E+R+V+TLL+L+DG++   QV ++A TNRP ALDPA+RRPGR DRE+E+ +P+A  R +IL + L  L    +++++Q+                      L+   HG+VGADL  + KEAAL AL R   S    +S  A++A      PT  +P   + +  AD++ A+  + PSALRE+A++VPRV W DIGG   +K  L+E VEWPL+HPEAF RMGI PP+GVLLYGPPGCSKTL A+ALATES MNF+A+KG PEL S+W+GESE+A+Q++FR+ARAAAPT++FFDEIDAIA +RG  + G +   +RVL+QLLTELDGIEPL++V+VVAATNRPDL+DSAL+RPGR+DR++YV PPDL +R EI      +I LA D       V++  LA AT   SGAE  ++CREAA+AA+E                   +  QI  A+L F++
Sbjct:   53 PPGTGKTMIARALAAELNAKIFFINGPEVVSKYIGESEANLRKIFENAARMGPSLIFIDEIDAICPKRDGRVGDMEKRMVATLLTLMDGLEKSAQVVVLAATNRPNALDPAIRRPGRFDREVEISIPNANDRLDILRVTLARL--PHNVTDDQL--------------------LELSGSAHGYVGADLSALCKEAALLALQRSFASRQQASS-NASSALPHPLHPTTHIPSFVVEI--ADLKHAMNGIRPSALREIAIDVPRVLWNDIGGQHMIKQQLKEAVEWPLKHPEAFIRMGIRPPKGVLLYGPPGCSKTLTAKALATESSMNFIAIKG-PELFSKWVGESEKAVQSIFRKARAAAPTVVFFDEIDAIASQRGGGDGGGSQVADRVLSQLLTELDGIEPLKQVLVVAATNRPDLIDSALMRPGRIDRVLYVGPPDLQARHEILSIHCRKIPLASD-------VNLQELAIATARFSGAELYSLCREAAMAAIEESKTADVVNTRHFLRALTLIQPQIDDAMLAFFD 550          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: H3G7P5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7P5_PHYRM)

HSP 1 Score: 478 bits (1230), Expect = 3.290e-161
Identity = 276/531 (51.98%), Postives = 355/531 (66.85%), Query Frame = 1
Query:    7 PPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRI-----ALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            PPGTGKT +AR  A      V  +NGPE+VS+FVGESEA LR +F +AA  AP LV  DE+DA+CP+RD+    +ERR+V+TLL+L+DG+ +  QV ++A TNRP ALDPA+RRPGR DRE+E+G+P A  R  IL + L  L  +  L+  Q+                    + L+A  HG+VGADL  + KEAAL AL R   S    N+  + A  A      AT  L A  +T +D++ A+  + PSALRE++V+VPRV W DIGG   +K  LRE VEWPL+HPEAF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KG PEL S+W+GESE+ ++ +FR+ARAA+PT++FFDEIDA+A  RGS   G +GA++RVL+QLLTELDG+EPL+RV+VVAATNRPDLLD AL+RPGR+DR +YV PPD+ +R +I +I      LA D       V +  LA A+   SGAE  A+CREAAL A+E                   VT QI   +L F+E
Sbjct:   41 PPGTGKTLIARTLARELNARVFTINGPEVVSKFVGESEANLRAVFAQAAREAPSLVFIDELDAICPKRDSRVGDMERRLVATLLTLMDGLTSSRQVVVLAATNRPNALDPAVRRPGRFDREVEIGIPRANDRLAILRVALRRLPHK--LTNSQL--------------------QELSATAHGYVGADLSALCKEAALLALHRAFAS----NAQASGAVLA------ATNSLPAFEITLSDLKLAMRGIRPSALREISVDVPRVLWSDIGGQSALKQSLREAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKG-PELFSKWVGESEQQVREIFRKARAASPTVVFFDEIDALASTRGS--GGSSGASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVPAREQILQIHTRSTPLAPD-------VSLNELAIASARFSGAELRALCREAALHAVEEDRAATNVAKRHFVRALAVVTPQIDDRMLAFFE 529          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: A0A1V9ZAU9_9STRA (ATPase AFG2 protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAU9_9STRA)

HSP 1 Score: 485 bits (1248), Expect = 9.030e-161
Identity = 274/531 (51.60%), Postives = 352/531 (66.29%), Query Frame = 1
Query:    7 PPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIF-----RIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            PPGTGKT +ARA AAA    V  +NGPELVS+FVGESEA +R +F+ AAA +P LV  DEIDALCP+RDA    +ERR+V+TLL+ +DG+DA   V ++A TNRP ALDPALRRPGRLDREIE+ +P A  R  IL   L               R +  A G + +       E +A + HG+VGADL  + KEAAL AL R                            L  +++T  D+R A++++ PSALRE+ ++VPRV W +IGG GG+K  L+E VEWPL HPEAF RMGI PP+G+LLYGPPGCSKTL A+ALATE GMNF+A+KG PEL S+W+GESE+A+QA+F +ARAAAP+++FFDEIDA+AG R  + +  +G  +RVL+QLL ELDGIEPL++V++VAATNRPDLLD+AL+RPGR+DR++YV PPD  +R EI      ++ LA D       VD+AALA AT   SGAE  A CREAALAA++                   +T QI   +L F++
Sbjct:  284 PPGTGKTMIARAVAAAASAKVFTINGPELVSKFVGESEANVRAVFRAAAAQSPALVFIDEIDALCPKRDATVGDMERRVVATLLTCMDGLDAAPGVVVLAATNRPNALDPALRRPGRLDREIEIPIPSAADRLRILQKTL---------------RPMPHAVGDTEL-------EAIAGQAHGYVGADLSALCKEAALLALRRS---------------------------LAHVQVTAGDLRVAMSKIRPSALREITLDVPRVLWSEIGGQGGIKQQLKEAVEWPLTHPEAFVRMGIRPPKGILLYGPPGCSKTLTAKALATEGGMNFIAIKG-PELFSKWVGESEKAIQAIFAKARAAAPSVVFFDEIDAVAGARSGSSS--SGVGDRVLSQLLNELDGIEPLKKVIIVAATNRPDLLDAALMRPGRIDRVLYVGPPDAAARQEILGIHTRKMPLAPD-------VDLAALALATDRFSGAELAAFCREAALAAIQEDTSTTAVAARHFAAAQKMITPQIDDRMLTFFQ 755          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: A0A662YE32_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YE32_9STRA)

HSP 1 Score: 481 bits (1237), Expect = 3.930e-159
Identity = 278/529 (52.55%), Postives = 347/529 (65.60%), Query Frame = 1
Query:    1 HRPPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDA-AASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            + PPGTGKT +ARA A      V  +NGPE+VS+FVGESEA LR +F RAA  AP LV  DE+DALCP+RDA +   +E+R+V+TLL+L+DG+    QV ++A TNRP ALDPA+RRPGR DRE+E+G+P A  R  IL + L  L    + +E Q                      +L+A  HG+VGADL  + KEAAL AL R             A A A         PL   ++T  D++ A+  V PSALRE+AV+VPRV W DIGG   +K  LRE VEWPLRHPEAF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KG PEL S+W+GESE+ ++ +FR+ARAA+PT++FFDEIDA+A  RG+   G +G T+RVL+QLLTELDG+EPL+RV+VVAATNRPDLLD ALLRPGR+DR +YV PPD+ +R +I  I         D   D   LA AT   SGAE  A+CREAALAA+E                   VT QI   +L F++
Sbjct:  261 YGPPGTGKTLIARALARELHARVFTINGPEVVSKFVGESEANLRAVFMRAAREAPSLVFIDELDALCPKRDAHSVGDMEQRLVATLLTLMDGLSGARQVVVLAATNRPNALDPAVRRPGRFDREVEIGIPRASDRLAILQVALRRLPHALTTAELQ----------------------QLSASAHGYVGADLSALCKEAALLALHR-------------AVANAPERSQGVLEPLPRFQVTLGDLQLAMRGVRPSALREIAVDVPRVLWSDIGGQETLKQALREAVEWPLRHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKG-PELFSKWVGESEQQVREVFRKARAASPTVVFFDEIDALASTRGAGGGGSSGVTDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALLRPGRIDRALYVAPPDVAARKQILHIHTRATPLAADVNADE--LAVATARFSGAELRALCREAALAAVEEDRAAAAVAKRHFVRALANVTPQINDQMLAFFQ 751          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: A0A8H7PRZ7_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PRZ7_MORIS)

HSP 1 Score: 478 bits (1230), Expect = 2.310e-158
Identity = 269/534 (50.37%), Postives = 350/534 (65.54%), Query Frame = 1
Query:    1 HRPPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQ------VAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            + PPGTGKT +ARA A+     VI +NG E++S+F GE+E  LR IF+ A   AP ++  DEIDALCP+RD A   +E+R+V+TLL+L+DG+    Q      + +I  TNRP ALD ALRRPGR DRE+E+G+P+A  R  IL  +L  +    SL  EQV                    E LAA +HG+VGADL  V +EA L  ++RL   P  + S                  + A+ +T  D++AA+  + PSA+RE+ +EVP+V W DIGG   VK+ L+E VEWPL+HP+AF RMGI PP+GVLLYGPPGCSKTLMA+ALATE+G+NF+AVKG PEL S+W+GESERA++ +FR+ARAA+P+IIFFDEIDA+  +RGS   G     +RVL+QLL ELDGIEPL  V VVAATNRPD++D ALLRPGR+DR++YV PPDL SR EIFR+ LA      D   D   LA  T G SGAE VA+C+EAAL AME                  ++ ++ITP +++FY+
Sbjct:  238 YGPPGTGKTLIARAVASETNAHVILINGAEVLSKFYGETEQKLRNIFEEAQERAPSIIFIDEIDALCPKRDEAPGEMEKRVVATLLTLMDGISTSPQAKRQAGIVVIGATNRPNALDEALRRPGRFDREVEIGIPNAIARYSILSTILRKI--PNSLENEQV--------------------ESLAATSHGYVGADLSAVCREAGLKCINRLCADPLWEQSRD----------------MQAVVVTYEDMKAAMAEIRPSAMREIMLEVPKVYWNDIGGQADVKSKLKESVEWPLKHPDAFARMGIRPPKGVLLYGPPGCSKTLMAKALATEAGLNFIAVKG-PELFSKWVGESERAVREVFRKARAASPSIIFFDEIDALTVKRGSDGDGGTSVADRVLSQLLNELDGIEPLVNVTVVAATNRPDIIDPALLRPGRIDRILYVNPPDLASRREIFRLQLAKIQCSPDISADE--LAEKTNGYSGAEIVAICQEAALQAMEADIHAQMIKAIHFSKAIISMKKRITPEMIQFYD 730          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: A0A3M6VJ41_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ41_9STRA)

HSP 1 Score: 478 bits (1231), Expect = 2.470e-158
Identity = 275/526 (52.28%), Postives = 356/526 (67.68%), Query Frame = 1
Query:    7 PPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            PPGTGKT +ARA A      V  +NGPE+VS+FVGESEA LR +F +AA  AP LV  DE+DA+CP+RD+    +ERR+V+TLL+L+DG+ +  QV ++A TNRP ALDPA+RRPGR DRE+E+G+P A  R EIL I L  L  + + SE               +L        L++  HG+VGADL  + KEAAL AL R   +       +A ++ AV    T+   L + ++T  D++ A+  + PSALRE++V+VPRV W DIGG   +K  LRE VEWPL+HPEAF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KG PEL S+W+GESE+ ++ +FR+ARAA+PT++FFDEIDA+A  RG+   G +GA++RVL+QLLTELDG+EPL+RV+VVAATNRPDLLD AL+RPGR+DR +YV PPD+ +R +I RI         D G+    LA AT   SGAE  A+CREAAL A+E                   VT QI   +L F+E
Sbjct:  259 PPGTGKTLIARALARELNARVFTINGPEVVSKFVGESEANLRAVFAQAAREAPSLVFIDELDAICPKRDSRVGDMERRLVATLLTLMDGLSSSRQVVVLAATNRPNALDPAVRRPGRFDREVEIGIPTANDRLEILRIALRRLPHKLTNSE---------------LL-------ELSSSAHGYVGADLSALCKEAALLALHRAFAN-------SAQSSGAVLAESTS---LPSYQVTLGDLKVAMRGIRPSALREISVDVPRVLWRDIGGQDALKQSLREAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLTAKALATESGMNFIAIKG-PELFSKWVGESEQQVREVFRKARAASPTVVFFDEIDALASTRGT--GGSSGASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVSAREQILRIHTRQTPLASDVGMTE--LAIATARYSGAELQALCREAALHAVEEDRAAMNVAKRHFVRALSVVTPQIDDQMLAFFE 747          
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Match: D0MSE2_PHYIT (ATPase AFG2 protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MSE2_PHYIT)

HSP 1 Score: 477 bits (1228), Expect = 2.690e-158
Identity = 274/531 (51.60%), Postives = 351/531 (66.10%), Query Frame = 1
Query:    7 PPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRAAAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAIIACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGSLSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAALHALSRLDGSPGVDNSMTAAAAAAVXXXPTATVPLTALRLTEADVRAALTRVSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGISPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESERALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTELDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIFRI-----ALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEXXXXXXXXXXXXXXXXXXAVTRQITPAVLRFYE 1584
            PPGTGKT +ARA A      V  +NGPE+VS+FVGESEA LR +F +AA  AP LV+ DE+DA+CP+RD+    +ERR+V+TLL+L+DG+    QV ++A TNRP ALDPA+RRPGR DRE+E+G+P A  R  IL + L  L  + + SE Q                       L++  HG+VGADL  + KEAAL AL R   S   ++  T A  A     P          +T +D++ A+  + PSALRE++V+VPRV W DIGG   +K  LRE VEWPL+HPEAF RMGI PP+GVLLYGPPGCSKTL A+ALATESGMNF+A+KG PEL S+W+GESE+ ++ +FR+ARAA+PT++FFDEIDA+A  RG+   G + A++RVL+QLLTELDG+EPL+RV+VVAATNRPDLLD AL+RPGR+DR +YV PPD+ +R +I RI      LA D       V +  LA AT   SGAE  A+CREAAL A+E                   VT QI   +L F+E
Sbjct:  227 PPGTGKTLIARALARELNARVFTINGPEVVSKFVGESEANLRAVFAQAAREAPSLVLIDELDAICPKRDSRVGDMERRLVATLLTLMDGLSGSRQVVVLAATNRPNALDPAVRRPGRFDREVEIGIPRANDRLAILRVALRRLPHKLTQSELQ----------------------ELSSSAHGYVGADLSALCKEAALLALHRAFAS---NDQATGAILANTASLPP-------FEVTLSDLKLAMRGIRPSALREISVDVPRVLWSDIGGQDALKQALREAVEWPLQHPEAFTRMGIRPPKGVLLYGPPGCSKTLAAKALATESGMNFIAIKG-PELFSKWVGESEQQVREVFRKARAASPTVVFFDEIDALASTRGA--GGSSSASDRVLSQLLTELDGLEPLKRVLVVAATNRPDLLDPALMRPGRIDRALYVSPPDVPAREQILRIHTRKTPLASD-------VSLTELAIATARFSGAELQALCREAALHAVEEDRVAVNVGKRHFVRALSVVTPQIDDRMLTFFE 715          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5389.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT73_ECTSI4.320e-19663.08Similar to spermatogenesis associated factor SPAF ... [more]
A0A4D9CZ55_9STRA4.910e-17356.46Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TTL3_9STRA7.580e-17357.28Spermatogenesis-associated protein 5 n=1 Tax=Nanno... [more]
K3W9Z8_GLOUD1.240e-16250.66Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3G7P5_PHYRM3.290e-16151.98Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1V9ZAU9_9STRA9.030e-16151.60ATPase AFG2 protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A662YE32_9STRA3.930e-15952.55Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8H7PRZ7_MORIS2.310e-15850.37Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A3M6VJ41_9STRA2.470e-15852.28Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0MSE2_PHYIT2.690e-15851.60ATPase AFG2 protein n=13 Tax=Phytophthora TaxID=47... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5389contigP-wetherbeei_contig5389:45..3876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FT73
Preferred nameAFG2
PFAMsAAA
Model size1611
Max annot lvl2759|Eukaryota
KEGG koko:K13525,ko:K14575
KEGG TC3.A.16.1
KEGG Pathwayko03008,ko04141,ko05134,map03008,map04141,map05134
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0030684,GO:0030687,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042221,GO:0042254,GO:0042273,GO:0042493,GO:0043167,GO:0043168,GO:0044085,GO:0044464,GO:0050896,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Exons9
Evalue7.08e-197
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-06_003850.1
DescriptionATP binding
Cds size1611
COG categoryO
BRITEko00000,ko00001,ko00002,ko03009,ko03019,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5389.1.1prot_P-wetherbeei_contig5389.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5389 45..3876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.3995266-CDS-P-wetherbeei_contig5389:44..2911683186805.3995266-CDS-P-wetherbeei_contig5389:44..291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 45..291 -
1683186805.4130054-CDS-P-wetherbeei_contig5389:492..6681683186805.4130054-CDS-P-wetherbeei_contig5389:492..668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 493..668 -
1683186805.4209657-CDS-P-wetherbeei_contig5389:936..11151683186805.4209657-CDS-P-wetherbeei_contig5389:936..1115Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 937..1115 -
1683186805.4288392-CDS-P-wetherbeei_contig5389:1514..18831683186805.4288392-CDS-P-wetherbeei_contig5389:1514..1883Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 1515..1883 -
1683186805.4369316-CDS-P-wetherbeei_contig5389:1970..20791683186805.4369316-CDS-P-wetherbeei_contig5389:1970..2079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 1971..2079 -
1683186805.444927-CDS-P-wetherbeei_contig5389:2356..25221683186805.444927-CDS-P-wetherbeei_contig5389:2356..2522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 2357..2522 -
1683186805.4529393-CDS-P-wetherbeei_contig5389:2809..28831683186805.4529393-CDS-P-wetherbeei_contig5389:2809..2883Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 2810..2883 -
1683186805.460636-CDS-P-wetherbeei_contig5389:3251..34411683186805.460636-CDS-P-wetherbeei_contig5389:3251..3441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 3252..3441 -
1683186805.468424-CDS-P-wetherbeei_contig5389:3775..38761683186805.468424-CDS-P-wetherbeei_contig5389:3775..3876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5389 3776..3876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5389.1.1

>prot_P-wetherbeei_contig5389.1.1 ID=prot_P-wetherbeei_contig5389.1.1|Name=mRNA_P-wetherbeei_contig5389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=537bp
HRPPGTGKTSLARAAAAACGVAVIAVNGPELVSRFVGESEAALRRIFQRA
AAVAPCLVVFDEIDALCPRRDAAASAVERRIVSTLLSLLDGVDALGQVAI
IACTNRPQALDPALRRPGRLDREIEVGVPDAGGREEILGIVLTSLGLRGS
LSEEQVGREVATATGLSFVLGQSGRGERLAARTHGFVGADLQLVVKEAAL
HALSRLDGSPGVDNSMTAAAAAAVAAAPTATVPLTALRLTEADVRAALTR
VSPSALREVAVEVPRVRWGDIGGMGGVKALLREVVEWPLRHPEAFQRMGI
SPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGRPELLSQWLGESER
ALQAMFRRARAAAPTIIFFDEIDAIAGRRGSAEAGQAGATERVLTQLLTE
LDGIEPLRRVVVVAATNRPDLLDSALLRPGRLDRLVYVPPPDLGSRTEIF
RIALADDGDGGDSGVDVAALAAATVGLSGAECVAVCREAALAAMEEDEDA
AVVEQRHLLAAAAAVTRQITPAVLRFYEGCAARGFG*
back to top

mRNA from alignment at P-wetherbeei_contig5389:45..3876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5389.1.1 ID=mRNA_P-wetherbeei_contig5389.1.1|Name=mRNA_P-wetherbeei_contig5389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3832bp|location=Sequence derived from alignment at P-wetherbeei_contig5389:45..3876- (Phaeothamnion wetherbeei SAG_119_79)
CACAGGCCGCCGGGCACCGGCAAGACGTCGCTGGCGCGCGCGGCGGCGGC GGCATGCGGCGTCGCCGTCATCGCCGTCAACGGCCCCGAGCTCGTCTCCA GGTGAGAGTACCGTTTGTTGCGGTTGTAGTTCTTGTGCTCGCACACCGGG GAGGAACGCATTGCATGCGGGAAGGAGACTTGTAGACTCATGGCGTCGGG ATGAATCTTTTGGACGAAAGAGTGTGGGAATAATGCCGCTGCTGTTGAAA CCCAAAGGCGCTCATCGGCGGTGACCGGCTCCTCTCTCCCCGCTTGCCCC TGCCGCTCGCGATTGCCCCAGCCAGCAAGCGGCGTCATTTGCCAGCTGTA TCCCAACCGTGCAGCAGCAATGCAATGCCCCCTCCCTCTTCGCTCTTTCC CGCCTTCTGGCTGTCCTGCTGCCTGCTCGCCTCAGGTTTGTCGGGGAGAG CGAGGCGGCGCTGCGGCGGATCTTCCAACGGGCGGCCGCAGTAGCGCCGT GCCTCGTCGTATTTGACGAGATCGACGCGCTCTGCCCGCGCCGCGATGCC GCCGCGAGCGCCGTGGAGCGCCGCATCGTCTCGACGCTGCTGTCGCTTCT CGATGGCGTCGACGCCCTCGGCCAGGTCCGTCTGGGGTCCGTGTTGCATC TGTGTCCATCGGGGCGGGTAGAGGAGAGGAGAGGATGAGATTGGACAGAA GGGACCCGATGGGTGGCGGGCGTCGCTTTCTGGGCTTTCGACACGCGGAG GGCGGGCCGGCAGGGAGAATGTGCGGCAGGGCTCCGTCGGGCATGTCGTA TCTGGCTTAAGGCGATCGTGTTGTTGTTCGATGCAACCTTGCGTTTTCTC TCTGTCTTCCTTGAAACTTCTTTGCGCGGAGGAAGGACATTGACGGTACA CACATGTCCGAAGCGTTGGCCACAGTCCTCCTTCCCTGACTCCTTTTTGC CAACCGCATTTTTTCTTGATGTTTGCTCGGCTCCCTCTCGCAGGTGGCCA TTATCGCATGCACCAACCGGCCGCAGGCGCTCGACCCCGCCTTGCGGCGG CCGGGCCGCCTCGACAGGTGCGCCTTCCATCCGTCATCTTCTCTGTTGCC TGATGGTTTTGGTGTCCCTCATCCGTCATCATGTCCCTTGAAGTTTGCTG TCACTGAAACTGTCTTATTGGAAAGGGCGGGCTTTTTTTAGGGAAGGATG CCACTCGGGCATGCTGCTGTGGTTTCTGCGCTAAGCTCTTTAACCTTTCG GCTCTCCCTTTACAGTGCAATTTTCGGCCCATTCGGGCCGCCCGCCGCCC TCCCCTTGCCCATTCGCCCGCTCCTATGAATGAATGGCGCCCCTATCCAT GCAGAGAGATCGAGGTGGGCGTTCCCGACGCCGGCGGGAGGGAGGAGATC CTCGGTATTGTGCTCACCTCACTCGGGCTGCGGGGCTCGCTCTCCGAAGA ACAGGTGGGGAGAGAGGTGGCGACGGCAACTGGCCTTTCTTTTGTTCTGG GACAGAGCGGGCGGGGCGAAGTATGCCCCGTTTGGAGAGAAAGATCGCCG GCGGCGGTCCGAAGTCATATGATGTCCTTCTGCGAAGGAGGTCAAACGCT CCGTGGATTCGGAGTTACGAGCCTTTTATGCTTGCTGGTTCCGTTATTTC CTTCTGTTGCCTGTCCGTACCAACACTCCCTTGCTGCTGCCGCCACTTCT GCTGATGGCGCCGATTTTCGCCGCCATCCGCTTCTTTGGTTACCCGTTGC TGCCATGCCGTATTCCCGCTTCCTCTCTTGCGCCCCTTCAGGTGCAGCGG CTAGCGGCGCGGACGCACGGCTTCGTGGGCGCGGACCTCCAGCTGGTTGT CAAAGAGGCCGCCCTCCACGCCCTCTCCCGCCTTGATGGCAGCCCTGGCG TCGATAGTAACGCCAACGCGGCGACCGCAGAGTTGCCATCGCCGCCTCCC TCAGCTGCTCCATCAAAGGCGCCGCTGCTCACAACTGCCAGAGATTCAAT GACGGCGGCGGCGGCAGCGGCGGTGGCGGCGGCACCAACGGCAACAGTGC CACTGACGGCGCTGCGGCTGACAGAGGCGGACGTGCGGGCGGCACTGACG CGCGTGTCCCCCAGCGCGCTGCGCGAGGTCGCTGTGGAAGTGCCACGCGT GCGATGGGGCGACATCGGCGGCATGGGCGGCGTCAAGGCGCTGCTGCGCG AGGTGGTTGAGTGGCCGCTGCGGCACCCCGAGGCGTTTCAGAGGATGGGA ATATCGCCGCCACGGGGCGTGCTGCTGTATGGGCCGCCGGGCTGCAGCAA GACGCTTATGGCGCGGGCGCTTGCCACCGAGTCGGGCATGAACTTCCTCG CCGTCAAAGGTCGTTCGGTTCCGGTTTCATGCTGGTTTCGCTTCGGTTGT GGTTTGGCCCGGTTCGTTCGACAGGCTAGTCGGTTTGGTCAACAAGTCGT CTGCAACGGTTTCTCTTGAATGAGACGTGGTGAAGAGCGAACGCCGGGGT CTTGGTGCGGTAGCACGTGTTGTATTTCTGCTGTTTTTCCCTTTGTTGTT GGGAATTTACGGCAGTCGGGTATGAAGCACAGGCAGTCGCAGACAGGCCA GTTATTTTCATTTCTTTGGAGGCTTGGAGGTTATCATGCGCCTCTCCCTC CCACCTTCCGTGCTCGCCGCTCCGTCGGACGTCCCCTCATCACATCGCCC GCAACCTGCCTCGATATTTCCCAATGCGGAAACCGCGCCTCTCCTACTCT GCAAATCGCAGGTCCGGAGCTGCTGAGCCAGTGGCTGGGCGAAAGCGAGC GCGCGTTGCAGGCCATGTTTCGGCGGGCGCGGGCCGCGGCGCCGACTATC ATCTTCTTCGACGAGATCGACGCCATCGCCGGCCGCCGCGGCAGCGCCGA GGCCGGGCAGGCCGGCGCTACGGAGCGGGTCCTGACGCAGGTGGGTGCTT AGATTAAGCTGCTGTTTTCCTATCTAGTTGCCGTTTCTGTAATTGACTTA TTTAGAAAACGCCAAGTAGTACGGGCAGGTTCACATTCTCCTCTGCAATT CACGGTTCTTTCCGTGATGGCTTCCTGTTGCTTTGTCCCGCCTTCCAAAG CTACGCATATCTCGTCCTTTCTGTTCGGGATCCAACCACGTCGTACTTCG CGGCACCGCAAACTGCCACACCCCGCCGCTGCGCCGGGTCACCAACGATG GAACACAGCTTTTAACAGAGCTGGACGGAATCGAGCCGCTGCGACGGGTG GTGGTGGTGGCGGCGACCAATCGACCTGACCTGCTAGACTCGGCGCTGCT GCGGCCGGGCCGCCTCGACCGCCTCGTCTACGTGCCGCCGCCCGACCTCG GCTCCCGCACCGAGATATTCCGCATTGCTCTCGCGTGCATGCCGCACCGG AAGGCCGGCGATGGAGGCGATGTCTGGGCCGGCATCAAAGCCGGCGTCAC CGCGAGCACAGATAGCGGCGCTGACGTCAGCAGTAACGAAGAAAGCGGCA GTCCGAGTGACGGCAGTGGGAACAGCAGCAAGGACGGCGACGCCACGCGA AACGAAGCAGCCTCCGAGCGCAGTGCCGGGAACAGCGACGATGGGGACGG TGGCGACAGCGGCGTGGACGTGGCGGCGCTGGCGGCGGCGACGGTGGGGT TGTCGGGGGCAGAGTGTGTGGCGGTGTGCCGCGAGGCGGCGCTGGCGGCT ATGGAGGAGGACGAGGATGCTGCCGTGGTGGAGCAGCGGCACCTCCTGGC AGCGGCGGCCGCCGTCACGCGGCAGATCACCCCGGCCGTGCTACGCTTTT ACGAGGGGTGCGCTGCCCGCGGCTTCGGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5389:45..3876-

>mRNA_P-wetherbeei_contig5389.1.1 ID=mRNA_P-wetherbeei_contig5389.1.1|Name=mRNA_P-wetherbeei_contig5389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1611bp|location=Sequence derived from alignment at P-wetherbeei_contig5389:45..3876- (Phaeothamnion wetherbeei SAG_119_79)
CACAGGCCGCCGGGCACCGGCAAGACGTCGCTGGCGCGCGCGGCGGCGGC
GGCATGCGGCGTCGCCGTCATCGCCGTCAACGGCCCCGAGCTCGTCTCCA
GGTTTGTCGGGGAGAGCGAGGCGGCGCTGCGGCGGATCTTCCAACGGGCG
GCCGCAGTAGCGCCGTGCCTCGTCGTATTTGACGAGATCGACGCGCTCTG
CCCGCGCCGCGATGCCGCCGCGAGCGCCGTGGAGCGCCGCATCGTCTCGA
CGCTGCTGTCGCTTCTCGATGGCGTCGACGCCCTCGGCCAGGTGGCCATT
ATCGCATGCACCAACCGGCCGCAGGCGCTCGACCCCGCCTTGCGGCGGCC
GGGCCGCCTCGACAGAGAGATCGAGGTGGGCGTTCCCGACGCCGGCGGGA
GGGAGGAGATCCTCGGTATTGTGCTCACCTCACTCGGGCTGCGGGGCTCG
CTCTCCGAAGAACAGGTGGGGAGAGAGGTGGCGACGGCAACTGGCCTTTC
TTTTGTTCTGGGACAGAGCGGGCGGGGCGAACGGCTAGCGGCGCGGACGC
ACGGCTTCGTGGGCGCGGACCTCCAGCTGGTTGTCAAAGAGGCCGCCCTC
CACGCCCTCTCCCGCCTTGATGGCAGCCCTGGCGTCGATAATTCAATGAC
GGCGGCGGCGGCAGCGGCGGTGGCGGCGGCACCAACGGCAACAGTGCCAC
TGACGGCGCTGCGGCTGACAGAGGCGGACGTGCGGGCGGCACTGACGCGC
GTGTCCCCCAGCGCGCTGCGCGAGGTCGCTGTGGAAGTGCCACGCGTGCG
ATGGGGCGACATCGGCGGCATGGGCGGCGTCAAGGCGCTGCTGCGCGAGG
TGGTTGAGTGGCCGCTGCGGCACCCCGAGGCGTTTCAGAGGATGGGAATA
TCGCCGCCACGGGGCGTGCTGCTGTATGGGCCGCCGGGCTGCAGCAAGAC
GCTTATGGCGCGGGCGCTTGCCACCGAGTCGGGCATGAACTTCCTCGCCG
TCAAAGGTCGTCCGGAGCTGCTGAGCCAGTGGCTGGGCGAAAGCGAGCGC
GCGTTGCAGGCCATGTTTCGGCGGGCGCGGGCCGCGGCGCCGACTATCAT
CTTCTTCGACGAGATCGACGCCATCGCCGGCCGCCGCGGCAGCGCCGAGG
CCGGGCAGGCCGGCGCTACGGAGCGGGTCCTGACGCAGCTTTTAACAGAG
CTGGACGGAATCGAGCCGCTGCGACGGGTGGTGGTGGTGGCGGCGACCAA
TCGACCTGACCTGCTAGACTCGGCGCTGCTGCGGCCGGGCCGCCTCGACC
GCCTCGTCTACGTGCCGCCGCCCGACCTCGGCTCCCGCACCGAGATATTC
CGCATTGCTCTCGCCGACGATGGGGACGGTGGCGACAGCGGCGTGGACGT
GGCGGCGCTGGCGGCGGCGACGGTGGGGTTGTCGGGGGCAGAGTGTGTGG
CGGTGTGCCGCGAGGCGGCGCTGGCGGCTATGGAGGAGGACGAGGATGCT
GCCGTGGTGGAGCAGCGGCACCTCCTGGCAGCGGCGGCCGCCGTCACGCG
GCAGATCACCCCGGCCGTGCTACGCTTTTACGAGGGGTGCGCTGCCCGCG
GCTTCGGCTGA
back to top