mRNA_P-wetherbeei_contig53845.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53845.1.1
Unique NamemRNA_P-wetherbeei_contig53845.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53845.1.1 vs. uniprot
Match: UPI001C3DE1C8 (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3DE1C8)

HSP 1 Score: 100 bits (248), Expect = 2.310e-25
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 MLKKSKG------DRASALAETVRPIVAKAMNDPELHSALRQAFATGREVTDQLSGKPAAKAAQSIARDKKLQRRVESSAHDLQKA 240
            M + SKG      DRA+AL ETVRPIV KAM+DPELH ALRQAFATGREV  ++SGKP  KAA+ +A D+KLQ+RVE+SA DLQ+A
Sbjct:    1 MFRNSKGTASAAADRAAALVETVRPIVTKAMHDPELHEALRQAFATGREVQGEISGKPPKKAAKKLAHDRKLQKRVEASATDLQRA 86
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BLAST of mRNA_P-wetherbeei_contig53845.1.1 vs. uniprot
Match: UPI001C3E2F60 (hypothetical protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E2F60)

HSP 1 Score: 97.1 bits (240), Expect = 1.160e-23
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   22 DRASALAETVRPIVAKAMNDPELHSALRQAFATGREVTDQLSGKPAAKAAQSIARDKKLQRRVESSAHDLQKA 240
            DRA+AL E  RPIV +AMNDPELH ALRQAF TGR+V  ++SGKP +KAA+ +ARDKKLQ+RVE+SA DLQ+A
Sbjct:   58 DRATALIEAARPIVTRAMNDPELHDALRQAFQTGRQVQGEISGKPPSKAAKKLARDKKLQKRVEASATDLQRA 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C3DE1C82.310e-2566.28hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
UPI001C3E2F601.160e-2369.86hypothetical protein n=1 Tax=Miltoncostaea marina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53845contigP-wetherbeei_contig53845:274..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.0484486-CDS-P-wetherbeei_contig53845:273..5131683186805.0484486-CDS-P-wetherbeei_contig53845:273..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53845 274..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53845.1.1prot_P-wetherbeei_contig53845.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53845 274..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53845.1.1

>prot_P-wetherbeei_contig53845.1.1 ID=prot_P-wetherbeei_contig53845.1.1|Name=mRNA_P-wetherbeei_contig53845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MLKKSKGDRASALAETVRPIVAKAMNDPELHSALRQAFATGREVTDQLSG
KPAAKAAQSIARDKKLQRRVESSAHDLQKA
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mRNA from alignment at P-wetherbeei_contig53845:274..513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53845.1.1 ID=mRNA_P-wetherbeei_contig53845.1.1|Name=mRNA_P-wetherbeei_contig53845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig53845:274..513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCAAGAAATCGAAGGGCGACCGCGCGAGCGCGCTGGCCGAGACCGT
TCGACCGATCGTCGCCAAGGCGATGAACGATCCCGAGCTGCACAGCGCGC
TGCGCCAGGCGTTCGCCACCGGCCGCGAGGTGACCGACCAGCTCAGCGGC
AAGCCGGCCGCGAAGGCCGCCCAGTCGATCGCCCGCGACAAGAAGCTGCA
GCGGCGCGTCGAGAGCTCGGCCCACGACCTGCAGAAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53845:274..513+

>mRNA_P-wetherbeei_contig53845.1.1 ID=mRNA_P-wetherbeei_contig53845.1.1|Name=mRNA_P-wetherbeei_contig53845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig53845:274..513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCAAGAAATCGAAGGGCGACCGCGCGAGCGCGCTGGCCGAGACCGT
TCGACCGATCGTCGCCAAGGCGATGAACGATCCCGAGCTGCACAGCGCGC
TGCGCCAGGCGTTCGCCACCGGCCGCGAGGTGACCGACCAGCTCAGCGGC
AAGCCGGCCGCGAAGGCCGCCCAGTCGATCGCCCGCGACAAGAAGCTGCA
GCGGCGCGTCGAGAGCTCGGCCCACGACCTGCAGAAGGCC
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