mRNA_P-wetherbeei_contig53773.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53773.1.1
Unique NamemRNA_P-wetherbeei_contig53773.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A7C2LQK1_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LQK1_9HYPH)

HSP 1 Score: 159 bits (401), Expect = 1.680e-46
Identity = 74/120 (61.67%), Postives = 100/120 (83.33%), Query Frame = 1
Query:   43 GVTAQSATDRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRIS 402
            GV ++  +DRR+H+R+ +TLLGRFMRAS++E+ CKL+D+S GGAA+H+PV V +GER+VA FDHIG IEG VVR + GGFAI+L AT++KR+KLA Q+TWL NR ELG+  D RRH+R++
Sbjct:   14 GVLSRIVSDRRRHKRIAVTLLGRFMRASREEHACKLIDISAGGAAIHSPVSVPVGERVVAYFDHIGGIEGMVVREFDGGFAIKLDATKHKREKLAAQLTWLANRSELGQA-DGRRHERVT 132          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A2S5MS19_HYPSQ (Pilus assembly protein PilZ n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MS19_HYPSQ)

HSP 1 Score: 157 bits (398), Expect = 4.650e-46
Identity = 74/127 (58.27%), Postives = 100/127 (78.74%), Query Frame = 1
Query:   52 AQSATDRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRISIVKSQKEALM 432
            A  ATD+R+HRRV + LLGRFMRA++ EYPCKL D+SVGGAA+++PVEV  GERIV  FDH+G +EGHVVR++ GGFA++ +AT +KR+KLA Q+TWL+NR  L  G D RRH+RI + +  +  ++
Sbjct:   16 AHPATDQRRHRRVALPLLGRFMRANRHEYPCKLNDISVGGAAINSPVEVEAGERIVVYFDHLGGLEGHVVRLFEGGFAMQFKATAHKREKLAAQLTWLINRDVLS-GADQRRHERIPVEERTQSVVL 141          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A1E4CRN5_9HYPH (Pilus assembly protein PilZ n=1 Tax=Hyphomicrobium sp. SCN 65-11 TaxID=1660102 RepID=A0A1E4CRN5_9HYPH)

HSP 1 Score: 155 bits (393), Expect = 2.730e-45
Identity = 81/136 (59.56%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   49 TAQSAT-------DRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRISIVKSQKEALMK 435
            TAQS T       DRR+H+RV +TLLGRFMRA+K EYPCKL DVS GGAA+  PVEV  GERIVA FD +G +EG+VVR++ GGFAI+L ATQ+KR+KL  Q+TWL+NR+EL  G D R+H+R++   + +E++MK
Sbjct:    9 TAQSGTIVSRTPADRRRHKRVALTLLGRFMRANKQEYPCKLSDVSAGGAAIMAPVEVEEGERIVAYFDQLGGLEGNVVRLFDGGFAIQLVATQHKREKLVAQLTWLINRNEL-TGEDERKHERVAP--NNRESMMK 141          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A537RTS2_9PROT (PilZ domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RTS2_9PROT)

HSP 1 Score: 154 bits (388), Expect = 8.140e-45
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   43 GVTAQSATDRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRIS 402
            GV ++   DRR+H+R+ +TLLGRFMR +K+E+PCKLVDVS GGAAV +PV V +GER+VA FDHIG IEG V R++ GGFA ++ AT++KR+KLA Q+TWL NR EL   G  RRHDRI+
Sbjct:   14 GVLSRIVPDRRRHKRISVTLLGRFMRENKEEHPCKLVDVSAGGAAVMSPVTVPLGERVVAYFDHIGGIEGKVARVFEGGFAFKINATKHKREKLAAQLTWLANRSELAVDG--RRHDRIT 131          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A7C4TXE4_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TXE4_9HYPH)

HSP 1 Score: 150 bits (380), Expect = 2.460e-43
Identity = 71/119 (59.66%), Postives = 98/119 (82.35%), Query Frame = 1
Query:   46 VTAQSATDRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRIS 402
            + ++   DRR+H+RV +TLLGRFMRA++ E+PCKLVD+SVGGA++ +PVEVN+ E+I+A FDHIG +EG VVR + GGFAI+ QATQ++R+KLA Q+TWL+NR +   G D RRH+RI+
Sbjct:   15 IASRITPDRRRHKRVILTLLGRFMRANRQEFPCKLVDISVGGASMMSPVEVNLEEKIIAYFDHIGGVEGTVVRCFDGGFAIKFQATQHRREKLAAQLTWLINRDQF-PGLDQRRHERIA 132          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A6N6SWF5_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SWF5_9HYPH)

HSP 1 Score: 147 bits (371), Expect = 6.900e-42
Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   43 GVTAQSATDRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRIS 402
            GV ++ A DRR+H+R+ ITL GRFMR +K E+PC+LVD+SVGGAA+ +     +GER+VA FDH+G IEG VVR++ GGFA  + ATQ+KR+KLA Q+TWL NR E+ E  D RRH+RI+
Sbjct:    9 GVLSRIAPDRRRHKRLSITLFGRFMRENKQEHPCRLVDISVGGAAIMSSAPAEIGERVVAYFDHVGGIEGIVVRLFDGGFAFRINATQHKREKLAAQLTWLANRAEMNEA-DGRRHERIA 127          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A2S5PFJ8_HYPSQ (Pilus assembly protein PilZ n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PFJ8_HYPSQ)

HSP 1 Score: 145 bits (366), Expect = 3.310e-41
Identity = 67/113 (59.29%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   67 DRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRISI 405
            DRR+H+RV ITLLGRFMRA+K EYPCKL D+SVGGA++ +PV +   ER++A FD +G IEG V R++ GGFA+++ ATQ KR+KLA Q+TWL+NRHE+ +G D R+H+R+++
Sbjct:   22 DRRRHKRVGITLLGRFMRANKLEYPCKLNDISVGGASIMSPVVLRENERVIAYFDQVGGIEGTVARLFEGGFAMKIIATQNKREKLAAQLTWLLNRHEM-QGADDRKHERVTV 133          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: UPI000373893F (PilZ domain-containing protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000373893F)

HSP 1 Score: 145 bits (366), Expect = 3.310e-41
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   67 DRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRISIV 408
            DRR+H+R  + LLGRFMRA+K E+PC+L D+SVGGAA+  PVEV +GERIV  FD IG +EG VVR + GGFAI L+ATQ+KR+KLA QITWL+N+ ELG G   RRH R  +V
Sbjct:   22 DRRRHKRYALALLGRFMRANKQEFPCRLNDISVGGAAIMAPVEVEIGERIVVYFDEIGGLEGVVVRTFEGGFAIALKATQHKREKLAAQITWLVNKDELG-GTFGRRHKRFEVV 134          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: A0A3N5MAW8_9HYPH (PilZ domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5MAW8_9HYPH)

HSP 1 Score: 145 bits (365), Expect = 7.560e-41
Identity = 67/121 (55.37%), Postives = 93/121 (76.86%), Query Frame = 1
Query:   40 FGVTAQSATDRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRIS 402
             GV ++ A DRR+H+R+ + LLGRFMR +K EYPC+LVD S GGAA+ +PV + +GER+VA FDH+G IEG VVR   GGFA ++ AT +KR+K+A Q+TWL NR E+G+  + RRH+R++
Sbjct:   13 LGVLSRIAPDRRRHKRLAVILLGRFMRPNKQEYPCRLVDASAGGAAILSPVAIEVGERVVAYFDHLGGIEGPVVRGIEGGFAFKIDATHHKREKIAAQLTWLANRVEMGDAAE-RRHERVA 132          
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Match: V5SEQ5_9HYPH (Pilus biosynthesis protein PilZ n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SEQ5_9HYPH)

HSP 1 Score: 140 bits (354), Expect = 2.150e-39
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   67 DRRKHRRVPITLLGRFMRASKDEYPCKLVDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQATQYKRDKLAGQITWLMNRHELGEGGDVRRHDRISIV 408
            DRR+H+R  + LLGRFMRA+K E+PC+L D+SVGGAAV +PVEV MGERIVA FD IG +EG V R++ GGF +  + +Q+KR+KLA QITWL+N+ ELG+    R+H R  +V
Sbjct:   22 DRRRHKRFHLALLGRFMRANKQEFPCRLNDISVGGAAVMSPVEVEMGERIVAYFDEIGGLEGEVARLFDGGFGMRFRVSQHKREKLAAQITWLVNKAELGDSFG-RKHKRFELV 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53773.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2LQK1_9HYPH1.680e-4661.67PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A2S5MS19_HYPSQ4.650e-4658.27Pilus assembly protein PilZ n=2 Tax=unclassified H... [more]
A0A1E4CRN5_9HYPH2.730e-4559.56Pilus assembly protein PilZ n=1 Tax=Hyphomicrobium... [more]
A0A537RTS2_9PROT8.140e-4561.67PilZ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7C4TXE4_9HYPH2.460e-4359.66PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A6N6SWF5_9HYPH6.900e-4258.33PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A2S5PFJ8_HYPSQ3.310e-4159.29Pilus assembly protein PilZ n=2 Tax=Hyphomicrobium... [more]
UPI000373893F3.310e-4163.16PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A3N5MAW8_9HYPH7.560e-4155.37PilZ domain-containing protein n=1 Tax=Hyphomicrob... [more]
V5SEQ5_9HYPH2.150e-3958.77Pilus biosynthesis protein PilZ n=1 Tax=Hyphomicro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53773contigP-wetherbeei_contig53773:1..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911258_gene415
Preferred nameMA20_31715
PFAMsPilZ
Model size435
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.43e-42
EggNOG OGs28I3D@1|root,2Z876@2|Bacteria,1P0DR@1224|Proteobacteria,2TTG2@28211|Alphaproteobacteria,3N757@45401|Hyphomicrobiaceae
DescriptionPilZ domain
Cds size435
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186803.948734-CDS-P-wetherbeei_contig53773:0..4351683186803.948734-CDS-P-wetherbeei_contig53773:0..435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53773 1..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53773.1.1prot_P-wetherbeei_contig53773.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53773 1..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53773.1.1

>prot_P-wetherbeei_contig53773.1.1 ID=prot_P-wetherbeei_contig53773.1.1|Name=mRNA_P-wetherbeei_contig53773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MDPVTKRTTDRPVFGVTAQSATDRRKHRRVPITLLGRFMRASKDEYPCKL
VDVSVGGAAVHTPVEVNMGERIVATFDHIGCIEGHVVRIYPGGFAIELQA
TQYKRDKLAGQITWLMNRHELGEGGDVRRHDRISIVKSQKEALMK
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mRNA from alignment at P-wetherbeei_contig53773:1..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53773.1.1 ID=mRNA_P-wetherbeei_contig53773.1.1|Name=mRNA_P-wetherbeei_contig53773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig53773:1..435- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCCAGTCACGAAGCGCACCACTGATCGCCCGGTGTTCGGCGTTAC AGCCCAAAGCGCGACCGATCGGCGCAAACACCGCCGCGTCCCGATCACGC TGCTCGGACGCTTCATGCGCGCCAGCAAGGATGAATATCCCTGCAAGCTC GTCGACGTATCGGTCGGCGGCGCCGCCGTCCACACACCCGTCGAAGTCAA CATGGGTGAGCGCATCGTCGCAACCTTCGATCATATCGGCTGTATCGAAG GCCACGTCGTCCGGATCTATCCCGGCGGCTTCGCTATCGAACTGCAGGCG ACCCAATACAAACGCGACAAGCTCGCGGGCCAGATCACCTGGTTGATGAA CCGCCACGAACTCGGCGAAGGCGGTGACGTCCGCCGCCATGATCGTATCT CGATCGTCAAATCCCAGAAGGAAGCTTTGATGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53773:1..435-

>mRNA_P-wetherbeei_contig53773.1.1 ID=mRNA_P-wetherbeei_contig53773.1.1|Name=mRNA_P-wetherbeei_contig53773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig53773:1..435- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCCAGTCACGAAGCGCACCACTGATCGCCCGGTGTTCGGCGTTAC
AGCCCAAAGCGCGACCGATCGGCGCAAACACCGCCGCGTCCCGATCACGC
TGCTCGGACGCTTCATGCGCGCCAGCAAGGATGAATATCCCTGCAAGCTC
GTCGACGTATCGGTCGGCGGCGCCGCCGTCCACACACCCGTCGAAGTCAA
CATGGGTGAGCGCATCGTCGCAACCTTCGATCATATCGGCTGTATCGAAG
GCCACGTCGTCCGGATCTATCCCGGCGGCTTCGCTATCGAACTGCAGGCG
ACCCAATACAAACGCGACAAGCTCGCGGGCCAGATCACCTGGTTGATGAA
CCGCCACGAACTCGGCGAAGGCGGTGACGTCCGCCGCCATGATCGTATCT
CGATCGTCAAATCCCAGAAGGAAGCTTTGATGAAG
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