mRNA_P-wetherbeei_contig12405.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12405.1.1
Unique NamemRNA_P-wetherbeei_contig12405.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12405.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12405contigP-wetherbeei_contig12405:264..1828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size616
Hectar predicted targeting categorysignal anchor
Exons5
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.1185343-CDS-P-wetherbeei_contig12405:263..4461683185948.1185343-CDS-P-wetherbeei_contig12405:263..446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12405 264..446 -
1683185948.126434-CDS-P-wetherbeei_contig12405:618..7351683185948.126434-CDS-P-wetherbeei_contig12405:618..735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12405 619..735 -
1683185948.1349921-CDS-P-wetherbeei_contig12405:1092..12401683185948.1349921-CDS-P-wetherbeei_contig12405:1092..1240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12405 1093..1240 -
1683185948.143943-CDS-P-wetherbeei_contig12405:1409..15381683185948.143943-CDS-P-wetherbeei_contig12405:1409..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12405 1410..1538 -
1683185948.1532347-CDS-P-wetherbeei_contig12405:1790..18281683185948.1532347-CDS-P-wetherbeei_contig12405:1790..1828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12405 1791..1828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12405.1.1prot_P-wetherbeei_contig12405.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12405 264..1828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12405.1.1

>prot_P-wetherbeei_contig12405.1.1 ID=prot_P-wetherbeei_contig12405.1.1|Name=mRNA_P-wetherbeei_contig12405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MRHELFNIYFLFSKWFTRPQRVCYFMTSVLTLMAIDAAVSSVVYEDYSPC
LSYATRAACLANGKSLQIYDSGQTTSGVCEWHSRTGSCYHQQVPINLEWN
VAISTVALIFRVPVDILMLYVFARFVARPVGRGNGGGGRAANEKSRIWAH
DGDEADTTSDWRAAVAATTFVTPIASPRKTDAVAAAAASAVGAVTPQRMV
TVGHV
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mRNA from alignment at P-wetherbeei_contig12405:264..1828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12405.1.1 ID=mRNA_P-wetherbeei_contig12405.1.1|Name=mRNA_P-wetherbeei_contig12405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1565bp|location=Sequence derived from alignment at P-wetherbeei_contig12405:264..1828- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCACGAACTGTTTAATATCTACTTTTTATTCAGGTGCGTGTGTGT
GTGCAGCTTTGAGAACATCGGTTTGTTTAAAGGAAAGTGCTTGCTTGTGC
CTTTCGCACACATCACCAAAGACTGGAAAGAGTTTCGCTCACATTTATCT
TCATGCCGTTGCTGCCGCCGCTTCCATCGCTCTTCCTGCCGCCGCTGCCA
CCGTCTCCTCTTCCTGCCACCGTCGCTTCCACCAACGCCGCTGTCCCAAT
ACGCTGCCGCTGCCGCCCGCCATCGCCAACCCAACCGCAGCAAGTGGTTC
ACGCGGCCGCAGCGGGTGTGCTACTTCATGACGTCTGTGCTGACGCTGAT
GGCGATTGACGCCGCCGTGTCGAGCGTCGTATACGAAGATTATTCGCCGT
GCCTCAGTTACGCGACACGGTGAGGTCACAATCCGAAGGCGGTACGCTCT
CAGTCACAATGATCCCTCATCTCGTGTGCAAGCGATAGGCATGGGGCGGC
ATTTTGGCTTCCCTATTAAAAGCGACCCTCCGCTGATCGACATCCCGGCC
CCTCTCCCTCTCTTGGGGACCTTTTTATGCGTTGTCAGGGCGGCATGTCT
CGCGAACGGCAAGTCTTTGCAGATTTATGACAGCGGCCAGACAACCAGTG
GTGTCTGCGAGTGGCATTCCCGCACCGGCAGCTGCTACCACCAGCAGGTT
CCAATCAACCTCGAATGGAACGTCGCCATTTCCACGGTGCGCTTTGCAGC
TTTGCCAGTGCTCTTCCTTGGAATGGTCCTTGTGTGGTCCATCTCGTGTC
TGCCTGGGATCCTTACTGTCCAACAGCAGGATTGACTCTTAGGGTTTTGC
TTCCTTCGCCGTCACACCCCGATATGAGGCATTTCGCCTACAGAAAGAGA
TATCGGTGGAAAGCTCGTTGACGTGAGCGTAGCTTATAGTCGCCCTTTGC
TGTTTTACTCTCTTCGCAATGCAGCCGGGCGCGCAAACCCCCAACACTCT
TAAATGGAGTACAGCACACAGATGGGTGGAGATTATTCGCCTTCTGCTAA
CCAGTTGAGATTCCTCTTGGTTGTCTTTTTCGTCTTGTGACAGGTGGCCT
TAATCTTCCGGGTGCCGGTCGACATTCTGATGCTCTACGTCTTCGCGCGG
TTCGTAGCACGGCCGGTAGGCCGCGGAAATGGCGGCGGCGGCCGCGCCGC
CAACGAAAAGGTGAGGCAGAGCGGCCCTTCCGGGTATACCTTTCCCCGGA
ATGCATTGCGTTGCGGCACAGCCGACTCTGGCGCGCCCTTAAGCTGGTTA
CGCAGCCCTTTCTGCACCTTTCACGTTTCCTCTCCTTGCGCTTCCGTTAT
TCTTATGAACAACACGCAATCGCGCAACGCAGTCCAGAATATGGGCGCAT
GACGGCGATGAGGCCGATACCACTAGTGATTGGCGGGCGGCCGTGGCAGC
CACAACCTTTGTAACGCCAATTGCCAGCCCGCGGAAGACCGACGCCGTCG
CTGCCGCCGCCGCCAGCGCCGTTGGTGCCGTGACGCCGCAGCGGATGGTC
ACGGTGGGTCACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12405:264..1828-

>mRNA_P-wetherbeei_contig12405.1.1 ID=mRNA_P-wetherbeei_contig12405.1.1|Name=mRNA_P-wetherbeei_contig12405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig12405:264..1828- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCACGAACTGTTTAATATCTACTTTTTATTCAGCAAGTGGTTCAC
GCGGCCGCAGCGGGTGTGCTACTTCATGACGTCTGTGCTGACGCTGATGG
CGATTGACGCCGCCGTGTCGAGCGTCGTATACGAAGATTATTCGCCGTGC
CTCAGTTACGCGACACGGGCGGCATGTCTCGCGAACGGCAAGTCTTTGCA
GATTTATGACAGCGGCCAGACAACCAGTGGTGTCTGCGAGTGGCATTCCC
GCACCGGCAGCTGCTACCACCAGCAGGTTCCAATCAACCTCGAATGGAAC
GTCGCCATTTCCACGGTGGCCTTAATCTTCCGGGTGCCGGTCGACATTCT
GATGCTCTACGTCTTCGCGCGGTTCGTAGCACGGCCGGTAGGCCGCGGAA
ATGGCGGCGGCGGCCGCGCCGCCAACGAAAAGTCCAGAATATGGGCGCAT
GACGGCGATGAGGCCGATACCACTAGTGATTGGCGGGCGGCCGTGGCAGC
CACAACCTTTGTAACGCCAATTGCCAGCCCGCGGAAGACCGACGCCGTCG
CTGCCGCCGCCGCCAGCGCCGTTGGTGCCGTGACGCCGCAGCGGATGGTC
ACGGTGGGTCACGTC
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