mRNA_P-wetherbeei_contig53688.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53688.1.1
Unique NamemRNA_P-wetherbeei_contig53688.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig53688.1.1 vs. uniprot
Match: A0A6G8BV29_9BURK (Uncharacterized protein n=1 Tax=Diaphorobacter sp. HDW4B TaxID=2714925 RepID=A0A6G8BV29_9BURK)

HSP 1 Score: 60.5 bits (145), Expect = 2.340e-10
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 MAKLDNIHTKLIEASKLLDEAAREMRDGSGMP-SEQVAKVGTAIAEVMLVRHQIYILRPDLMPGYLK 198
            MA L+ I+ +L  A+ +LD AA ++RD    P SE + K+G A+AE+  ++H+IY+  P LMP YL 
Sbjct:    1 MASLELINLRLKLAANILDGAASDIRDADYQPRSENILKIGCALAEIFEIQHRIYVTHPHLMPAYLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53688.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6G8BV29_9BURK2.340e-1043.28Uncharacterized protein n=1 Tax=Diaphorobacter sp.... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53688contigP-wetherbeei_contig53688:2..211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.923854-CDS-P-wetherbeei_contig53688:1..2111683186802.923854-CDS-P-wetherbeei_contig53688:1..211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53688 2..211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53688.1.1prot_P-wetherbeei_contig53688.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53688 2..211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53688.1.1

>prot_P-wetherbeei_contig53688.1.1 ID=prot_P-wetherbeei_contig53688.1.1|Name=mRNA_P-wetherbeei_contig53688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MAKLDNIHTKLIEASKLLDEAAREMRDGSGMPSEQVAKVGTAIAEVMLVR
HQIYILRPDLMPGYLKGGE*
back to top

mRNA from alignment at P-wetherbeei_contig53688:2..211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53688.1.1 ID=mRNA_P-wetherbeei_contig53688.1.1|Name=mRNA_P-wetherbeei_contig53688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig53688:2..211+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAAGCTCGACAACATCCACACCAAGCTCATCGAGGCCTCGAAGCT
GCTCGACGAAGCCGCGCGCGAAATGCGCGACGGCTCCGGCATGCCTTCGG
AGCAGGTGGCCAAGGTGGGCACCGCCATTGCCGAAGTGATGCTGGTACGC
CACCAGATCTACATATTGCGCCCGGACCTGATGCCCGGATACCTGAAAGG
CGGGGAGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53688:2..211+

>mRNA_P-wetherbeei_contig53688.1.1 ID=mRNA_P-wetherbeei_contig53688.1.1|Name=mRNA_P-wetherbeei_contig53688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig53688:2..211+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAAGCTCGACAACATCCACACCAAGCTCATCGAGGCCTCGAAGCT
GCTCGACGAAGCCGCGCGCGAAATGCGCGACGGCTCCGGCATGCCTTCGG
AGCAGGTGGCCAAGGTGGGCACCGCCATTGCCGAAGTGATGCTGGTACGC
CACCAGATCTACATATTGCGCCCGGACCTGATGCCCGGATACCTGAAAGG
CGGGGAGTAG
back to top