mRNA_P-wetherbeei_contig53669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A157ZSN8_9BURK (Two component LuxR family transcriptional regulator n=2 Tax=Caballeronia temeraria TaxID=1777137 RepID=A0A157ZSN8_9BURK) HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14 Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTRS 219
E+ IEL +G++ GEIG+FSP H RT++ IC D D+ T+++ RLY +P+FALY+V IA RL AD+ R+
Sbjct: 266 ELGIELGAGTVLGEIGLFSPEHRRTSTVICKTDCDMRTVSAADAIRLYYQDPEFALYLVRLIASRLQADKERN 338
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A656QFY6_9BURK (Cyclic nucleotide-binding protein n=2 Tax=Caballeronia zhejiangensis TaxID=871203 RepID=A0A656QFY6_9BURK) HSP 1 Score: 73.9 bits (180), Expect = 7.580e-14 Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
E+ IEL +G++ GEIG+FSP H RT++ IC D ++ T+++ RLY P+FALY+V IA RL AD+ R
Sbjct: 263 ELGIELGAGTVLGEIGLFSPEHRRTSTVICKTDCEMRTVSAADAIRLYYQEPEFALYLVQLIASRLQADKDR 334
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A1N6K616_9BURK (DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains n=1 Tax=Paraburkholderia phenazinium TaxID=60549 RepID=A0A1N6K616_9BURK) HSP 1 Score: 71.2 bits (173), Expect = 7.630e-13 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
EI +E+ +G++ GEIG+FSP+H RT +A+C D ++ +++ R+Y +P+FA Y+V I +RL AD++R
Sbjct: 270 EIGVEVGAGTILGEIGLFSPDHRRTCTAVCKSDCELLMVSATDAMRMYYQDPEFATYLVRLITRRLEADKSR 341
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A7W8L2Q2_9BURK (DNA-binding NarL/FixJ family response regulator n=3 Tax=Paraburkholderia TaxID=1822464 RepID=A0A7W8L2Q2_9BURK) HSP 1 Score: 70.5 bits (171), Expect = 1.420e-12 Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTRSV 222
E+ I++ +G++ GEIG+FSP + RT++AIC D ++ T+++ LY P+FALY++ IA RL AD++R V
Sbjct: 269 ELGIDMGAGTVLGEIGLFSPEYRRTSTAICKTDCEMRTVSAADAISLYYQEPEFALYLIQLIASRLQADKSRRV 342
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: UPI001AE4EEAF (LuxR C-terminal-related transcriptional regulator n=1 Tax=Paraburkholderia sp. LEh10 TaxID=2821353 RepID=UPI001AE4EEAF) HSP 1 Score: 69.7 bits (169), Expect = 2.710e-12 Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
E+ +++ +G++ GEIG+FSP + RT++A+C D ++ T+++ RLY P+FALY++ IA RL AD R
Sbjct: 269 ELGLDMGAGTVLGEIGLFSPEYRRTSTAVCKTDCEMRTVSAADAIRLYYQEPEFALYLIQLIASRLQADNAR 340
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A4P8IZP6_9BURK (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Burkholderia sp. DHOD12 TaxID=2571746 RepID=A0A4P8IZP6_9BURK) HSP 1 Score: 65.1 bits (157), Expect = 1.260e-10 Identity = 28/73 (38.36%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTRS 219
EI IE++ G++ GEIG+FS +H RT +A C D ++ ++++ + R Y +P+FA +++ I +RL+ D++RS
Sbjct: 269 EIGIEVSPGTIVGEIGLFSADHRRTCTARCESDCELLSMSAMEAMRFYYQDPEFAAFLIQLITRRLVDDKSRS 341
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: UPI00131ACEE7 (LuxR C-terminal-related transcriptional regulator n=1 Tax=Burkholderia sp. S171 TaxID=1641860 RepID=UPI00131ACEE7) HSP 1 Score: 64.3 bits (155), Expect = 2.340e-10 Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
E IEL +G++ GEIG+FSP H RT +A+C ++ +++ RLY P+FAL+++ I +RL AD R
Sbjct: 265 EFGIELGAGTVLGEIGLFSPEHRRTCTAVCRSVCEMRVVSAADAVRLYYQEPEFALHLLQLIVRRLQADSLR 336
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A515DAB7_9BURK (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Rhodoferax sediminis TaxID=2509614 RepID=A0A515DAB7_9BURK) HSP 1 Score: 62.8 bits (151), Expect = 4.170e-10 Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMADQTR 216
E+ L G++FGE+G+FSP H R +A C+G V ++ VK+LY NP F ++ +A+RL AD R
Sbjct: 148 EVGSVLGPGTIFGEVGLFSPGHRRALTARCIGACTVLSIDESTVKQLYYQNPAFGFKLIALVARRLSADVER 219
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A0L0MFW7_9BURK (Transcriptional regulator, LuxR family n=1 Tax=Candidatus Burkholderia verschuerenii TaxID=242163 RepID=A0A0L0MFW7_9BURK) HSP 1 Score: 63.5 bits (153), Expect = 4.450e-10 Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVH 180
E+ IEL +GS+FGEIG+FSP H RT++A+C ++ +++D RLY P+FA+Y+++
Sbjct: 264 ELGIELGAGSVFGEIGLFSPKHRRTSTAVCKTVCEMRAVSADDAIRLYYQEPEFAMYLIN 323
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Match: A0A1G6CBE1_9HYPH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6CBE1_9HYPH) HSP 1 Score: 59.7 bits (143), Expect = 4.810e-9 Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 1 EIDIELTSGSMFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHQIAQRLMAD 207
E+D+E+ SG+M GEIGVFSP+ TR +A C+ + + ++ D+V+ L +P+ A ++ + RL+ D
Sbjct: 125 ELDVEVNSGAMLGEIGVFSPHGTRMATATCIDECRLQRISRDKVRELVFQDPRIAFNLIGVVTGRLIED 193 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig53669.1.1 >prot_P-wetherbeei_contig53669.1.1 ID=prot_P-wetherbeei_contig53669.1.1|Name=mRNA_P-wetherbeei_contig53669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp MFGEIGVFSPNHTRTTSAICVGDADVFTLTSDQVKRLYLLNPQFALYVVHback to top mRNA from alignment at P-wetherbeei_contig53669:3..227+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig53669.1.1 ID=mRNA_P-wetherbeei_contig53669.1.1|Name=mRNA_P-wetherbeei_contig53669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig53669:3..227+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig53669:3..227+ >mRNA_P-wetherbeei_contig53669.1.1 ID=mRNA_P-wetherbeei_contig53669.1.1|Name=mRNA_P-wetherbeei_contig53669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig53669:3..227+ (Phaeothamnion wetherbeei SAG_119_79)back to top |