mRNA_P-wetherbeei_contig5365.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5365.1.1
Unique NamemRNA_P-wetherbeei_contig5365.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5365.1.1 vs. uniprot
Match: A0A1F9CH84_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium RBG_16_54_11 TaxID=1797842 RepID=A0A1F9CH84_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 2.390e-5
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   19 DSIISACTAVIDNPRERSATLAAAYAARGDAYREKGEFDKAIDDLDQAMKLDPRNGTAIYN 201
            D  I  CT  I++       L++ Y  RG A+ EKG++DKAI D+++A+++DP++  A YN
Sbjct:   43 DEAIRLCTKAIESGELSGKNLSSVYCTRGTAWAEKGDYDKAIADINKAIEIDPKDAMAYYN 103
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BLAST of mRNA_P-wetherbeei_contig5365.1.1 vs. uniprot
Match: A0A525JG09_BRASZ (Tetratricopeptide repeat protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JG09_BRASZ)

HSP 1 Score: 56.2 bits (134), Expect = 2.690e-5
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   37 CTAVIDNPRERSATLAAAYAARGDAYREKGEFDKAIDDLDQAMKLDP 177
            CTAVID+  ER+   A AY  RGDAY  KG++D+A+ D DQ++KL+P
Sbjct:   58 CTAVIDSVGERAPAAAMAYNNRGDAYTTKGDYDRAVKDFDQSIKLNP 104
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BLAST of mRNA_P-wetherbeei_contig5365.1.1 vs. uniprot
Match: A0A2V6SAQ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6SAQ4_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.900e-5
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   13 SQDSIISACTAVIDNPRERSATLAAAYAARGDAYREKGEFDKAIDDLDQAMKLDPRN 183
            S +  I +CTA+I + RE+ A LAAAY +R  A+R  G +D+AI+D DQA++LDP++
Sbjct:   66 SSEVAIQSCTAIIRSGREKGARLAAAYYSRATAHRVDGWYDRAIEDYDQAIRLDPKH 122
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BLAST of mRNA_P-wetherbeei_contig5365.1.1 vs. uniprot
Match: A0A2V6U2A2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6U2A2_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.850e-5
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   28 ISACTAVIDNPRERSATLAAAYAARGDAYREKGEFDKAIDDLDQAMKLDPRN 183
            I +CTA+I + RE+ A LAAAY +R  A+R  G +D+AI+D DQA++LDP++
Sbjct:   46 IQSCTAIIRSGREKGARLAAAYYSRATAHRVDGWYDRAIEDYDQAIRLDPKH 97
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BLAST of mRNA_P-wetherbeei_contig5365.1.1 vs. uniprot
Match: A0A537UV81_9PROT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UV81_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 6.910e-5
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   13 SQDSIISACTAVIDNPRERSATLAAAYAARGDAYREKGEFDKAIDDLDQAMKLDPRNGTA 192
            S D  +  CTA+I++  +   +L  AY  RG+AY  KGE+D+A+ D DQ++KLDP    A
Sbjct:   47 SPDIQVDGCTALINSSAQTPQSLVIAYNNRGNAYTAKGEYDRAVQDYDQSIKLDPNYARA 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5365.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1F9CH84_9DELT2.390e-539.34Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A525JG09_BRASZ2.690e-555.32Tetratricopeptide repeat protein n=1 Tax=Bradyrhiz... [more]
A0A2V6SAQ4_9BACT2.900e-549.12Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A2V6U2A2_9BACT3.850e-551.92Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A537UV81_9PROT6.910e-543.33Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5365contigP-wetherbeei_contig5365:207..1385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog189753.AXAS01000074_gene7912
PFAMsTPR_1,TPR_11,TPR_16,TPR_2,TPR_8
Model size1083
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000299
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1NVDX@1224|Proteobacteria,2TU6I@28211|Alphaproteobacteria,3JUJM@41294|Bradyrhizobiaceae
DescriptionTPR repeat
Cds size1083
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.5495574-CDS-P-wetherbeei_contig5365:206..4641683186802.5495574-CDS-P-wetherbeei_contig5365:206..464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5365 207..464 +
1683186802.5606623-CDS-P-wetherbeei_contig5365:560..13851683186802.5606623-CDS-P-wetherbeei_contig5365:560..1385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5365 561..1385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5365.1.1prot_P-wetherbeei_contig5365.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5365 207..1385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5365.1.1

>prot_P-wetherbeei_contig5365.1.1 ID=prot_P-wetherbeei_contig5365.1.1|Name=mRNA_P-wetherbeei_contig5365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=361bp
KESSSQDSIISACTAVIDNPRERSATLAAAYAARGDAYREKGEFDKAIDD
LDQAMKLDPRNGTAIYNRGLAYRSKGDHDRAIADFDDLTQAIKINPRYTL
AIYNRAMAYRAKGEPDRAVPDFDAVIKANPNDAYAYHNRGMAYRDMRDYD
RAIRDFDQALKINSAFTAAFNDRGLAYVSKGETDRAIQDFDQAILLNPKD
AVAFNNRGLAYRNKGETDAAINNYDQAISITPDFALAFYNRGNANYDKRD
YDRAIQDYNTAIKINPNYALAYYDRGVVYYDRHDYERAVADLSKAIELDP
KDSLAYYNRGLTYRAKQEMDKALADFDVAIKLDPKNPLPFYNRGLASRDK
GDHERAVADFS
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mRNA from alignment at P-wetherbeei_contig5365:207..1385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5365.1.1 ID=mRNA_P-wetherbeei_contig5365.1.1|Name=mRNA_P-wetherbeei_contig5365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1179bp|location=Sequence derived from alignment at P-wetherbeei_contig5365:207..1385+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGAATCGTCCAGCCAGGATTCGATCATCAGCGCCTGTACGGCGGTGAT
CGACAATCCGCGGGAACGTTCTGCAACACTGGCGGCCGCTTACGCCGCGC
GCGGCGACGCCTACCGCGAAAAGGGCGAGTTCGATAAAGCCATCGACGAT
CTCGATCAGGCGATGAAGCTCGACCCGCGCAACGGCACCGCGATCTACAA
TCGCGGTCTTGCCTATCGCTCGAAGGGCGATCATGACCGTGCGATCGCCG
ACTTCGATGTCGCGATCAAGCTCGATCCGCGCAATGCTTCGACGATCTAC
AACAGCCGCAGCCATGCCCATTACGAAAAGCGGGACTACGAACGCGCGAT
TCAGGACCTGACACAAGCGATCAAGATCAATCCGCGCTACACGCTGGCGA
TCTACAATCGCGCGATGGCGTATCGTGCCAAGGGCGAGCCGGACCGCGCG
GTGCCGGATTTCGACGCCGTCATCAAAGCCAATCCGAATGACGCTTACGC
GTATCACAACCGCGGCATGGCCTATCGCGACATGCGCGACTATGACCGCG
CGATCCGCGACTTCGATCAGGCGCTGAAGATCAATTCGGCGTTCACGGCC
GCGTTCAACGATCGCGGTCTCGCCTATGTTTCCAAGGGCGAGACCGACCG
CGCCATTCAGGACTTCGATCAGGCGATCCTTCTCAACCCGAAGGATGCGG
TCGCGTTCAACAACCGCGGCCTGGCCTATCGCAACAAGGGCGAGACCGAC
GCCGCCATCAACAACTACGATCAGGCGATCTCGATCACGCCCGACTTCGC
GCTCGCGTTCTACAATCGCGGCAATGCGAACTACGACAAGCGCGACTACG
ATCGCGCCATCCAGGATTACAACACCGCGATCAAGATCAACCCGAACTAC
GCGCTCGCCTATTACGATCGCGGCGTCGTCTATTACGATCGCCACGACTA
CGAGCGTGCGGTGGCCGATCTCAGCAAGGCGATCGAGCTCGATCCGAAGG
ATTCGCTCGCCTACTACAACCGCGGCCTGACGTATCGCGCCAAGCAGGAA
ATGGACAAGGCGCTCGCCGATTTCGACGTGGCGATCAAGCTCGATCCCAA
GAATCCGCTGCCGTTCTACAACCGCGGTCTCGCGTCGCGCGACAAGGGCG
ACCACGAGCGTGCCGTCGCCGATTTCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5365:207..1385+

>mRNA_P-wetherbeei_contig5365.1.1 ID=mRNA_P-wetherbeei_contig5365.1.1|Name=mRNA_P-wetherbeei_contig5365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1083bp|location=Sequence derived from alignment at P-wetherbeei_contig5365:207..1385+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGAATCGTCCAGCCAGGATTCGATCATCAGCGCCTGTACGGCGGTGAT
CGACAATCCGCGGGAACGTTCTGCAACACTGGCGGCCGCTTACGCCGCGC
GCGGCGACGCCTACCGCGAAAAGGGCGAGTTCGATAAAGCCATCGACGAT
CTCGATCAGGCGATGAAGCTCGACCCGCGCAACGGCACCGCGATCTACAA
TCGCGGTCTTGCCTATCGCTCGAAGGGCGATCATGACCGTGCGATCGCCG
ACTTCGATGACCTGACACAAGCGATCAAGATCAATCCGCGCTACACGCTG
GCGATCTACAATCGCGCGATGGCGTATCGTGCCAAGGGCGAGCCGGACCG
CGCGGTGCCGGATTTCGACGCCGTCATCAAAGCCAATCCGAATGACGCTT
ACGCGTATCACAACCGCGGCATGGCCTATCGCGACATGCGCGACTATGAC
CGCGCGATCCGCGACTTCGATCAGGCGCTGAAGATCAATTCGGCGTTCAC
GGCCGCGTTCAACGATCGCGGTCTCGCCTATGTTTCCAAGGGCGAGACCG
ACCGCGCCATTCAGGACTTCGATCAGGCGATCCTTCTCAACCCGAAGGAT
GCGGTCGCGTTCAACAACCGCGGCCTGGCCTATCGCAACAAGGGCGAGAC
CGACGCCGCCATCAACAACTACGATCAGGCGATCTCGATCACGCCCGACT
TCGCGCTCGCGTTCTACAATCGCGGCAATGCGAACTACGACAAGCGCGAC
TACGATCGCGCCATCCAGGATTACAACACCGCGATCAAGATCAACCCGAA
CTACGCGCTCGCCTATTACGATCGCGGCGTCGTCTATTACGATCGCCACG
ACTACGAGCGTGCGGTGGCCGATCTCAGCAAGGCGATCGAGCTCGATCCG
AAGGATTCGCTCGCCTACTACAACCGCGGCCTGACGTATCGCGCCAAGCA
GGAAATGGACAAGGCGCTCGCCGATTTCGACGTGGCGATCAAGCTCGATC
CCAAGAATCCGCTGCCGTTCTACAACCGCGGTCTCGCGTCGCGCGACAAG
GGCGACCACGAGCGTGCCGTCGCCGATTTCTCG
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