mRNA_P-wetherbeei_contig5364.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5364.2.3
Unique NamemRNA_P-wetherbeei_contig5364.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A126X057_SARFS (Putative LOV domain-containing protein n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A126X057_SARFS)

HSP 1 Score: 310 bits (794), Expect = 3.510e-101
Identity = 154/210 (73.33%), Postives = 180/210 (85.71%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVR 831
            QERNREHAKRSRIRKKF+LECLQEQL+ +RK+N+ LRQVVKE MP  A +VFEKC NEKALVLSGK  E +A  +   E  E +    LL+EPDFQL++ LM+SQQNFT+SDP++PDNPIVYASQGFL LTGY +  VIGRNCRFLQGPGTD RA+DI+RRG+A+GRDTSVCLLNY+ADGTPFWNQFF+AALRD  GK+VN+VGVQCEV+
Sbjct:   32 QERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKCTNEKALVLSGKNTE-SAQPIQSDEEDETKEPNCLLLEPDFQLMRALMESQQNFTISDPSMPDNPIVYASQGFLNLTGYCIQNVIGRNCRFLQGPGTDPRAIDIVRRGVAEGRDTSVCLLNYKADGTPFWNQFFVAALRDDTGKIVNYVGVQCEVQ 240
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A835Z0M1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M1_9STRA)

HSP 1 Score: 310 bits (794), Expect = 7.360e-101
Identity = 157/212 (74.06%), Postives = 182/212 (85.85%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVRSS 837
            +ERNREHAKRSR+RKKF+L+CLQ+QL+ LRKENMNLRQVVKE MP VATQ+FEKC++EKALVLS    E AA   A + A   ++   LLVEPDFQLI  LMDSQQNFT+S+P LPDNPIVYASQGFLKLTGY++++VIGRNCRFLQGPGTD RAVDIIRRG+A+GRDTSVCLLNY+ADGTPFWN FF+ ALRD  G++VN VGVQ EV+ S
Sbjct:   67 RERNREHAKRSRVRKKFMLDCLQDQLLALRKENMNLRQVVKEHMPEVATQIFEKCVSEKALVLSADTGEAAAGGHAAV-AFTSKKPDCLLVEPDFQLISALMDSQQNFTISNPHLPDNPIVYASQGFLKLTGYSIEQVIGRNCRFLQGPGTDPRAVDIIRRGVAEGRDTSVCLLNYRADGTPFWNNFFVGALRDQQGRIVNHVGVQAEVKQS 277
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: D7FRW8_ECTSI (Aureochrome 4 n=2 Tax=Ectocarpales TaxID=2877 RepID=D7FRW8_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.400e-100
Identity = 158/220 (71.82%), Postives = 181/220 (82.27%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVRSSHYSFSFLD 861
            +ERNREHAKRSRIRKKF+LECLQEQL+ +RK+N+ LRQVVKE MP  A+ VFEKCINEKALVLSGK  E A   L+  E  E +    LL+EPDFQL+Q LM SQQNFT+SDP++PDNPIVYASQGFL LTGYT+  VIGRNCRFLQGPGTD RA+DIIRRG+A+GRDTSVCL+NY+ADGTPFWNQFF+AALRD  GK+VNFVGVQ EV        F +
Sbjct:   44 RERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEASTVFEKCINEKALVLSGKSTESAQPILSDDEE-ETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRAIDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDDTGKIVNFVGVQGEVHEEAQDRDFRE 262
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A126X320_SARHM (Putative LOV domain-containing protein n=4 Tax=Sargassum TaxID=3015 RepID=A0A126X320_SARHM)

HSP 1 Score: 312 bits (799), Expect = 6.810e-100
Identity = 155/210 (73.81%), Postives = 181/210 (86.19%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVR 831
            QERNREHAKRSRIRKKF+LECLQEQL+ +RK+N+ LRQVVKE MP  A +VFEKC NEKALVLSGK  E +A  +   E  E +    LL+EPDFQL++ LM+SQQNFT+SDP++PDNPIVYASQGFLKLTGY +  VIGRNCRFLQGPGTD RA+DI+RRG+A+GRDTSVCLLNY+ADGTPFWNQFF+AALRD  GK+VN+VGVQCEV+
Sbjct:  178 QERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKCTNEKALVLSGKNTE-SAQPIQSDEEDETKEPNCLLLEPDFQLMRALMESQQNFTISDPSMPDNPIVYASQGFLKLTGYCIQNVIGRNCRFLQGPGTDPRAIDIVRRGVAEGRDTSVCLLNYKADGTPFWNQFFVAALRDDTGKIVNYVGVQCEVQ 386
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A126WWZ7_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A126WWZ7_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 3.400e-99
Identity = 155/220 (70.45%), Postives = 182/220 (82.73%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVRSSHYSFSFLD 861
            QERNREHAKRSRIRKKF+LECLQEQL+ +RK+N+ LRQVVKE MP  A +VFEKC NEKALVLSGK  E +A  +   E  E +    LL+EPDFQL++ LM+SQQNFT+SDP++PDNPIVYASQGFL LTGYT+  VIGRNCRFLQGPGTD RA+DI+RRG+A+GRDTSVCLLNY+ADGTPFWNQFF+AALRD   K+VN+VGVQCEV+       F +
Sbjct:  176 QERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAKVFEKCTNEKALVLSGKNTE-SAQPIQSDEEDEAKEPNCLLLEPDFQLMRALMESQQNFTISDPSMPDNPIVYASQGFLNLTGYTIQNVIGRNCRFLQGPGTDPRAIDIVRRGVAEGRDTSVCLLNYKADGTPFWNQFFVAALRDDTDKIVNYVGVQCEVQEEAEDCEFRE 394
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A126WZ27_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZ27_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 5.020e-99
Identity = 155/210 (73.81%), Postives = 178/210 (84.76%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVR 831
            +ERNREHAKRSRIRKKF+LECLQEQL+ +RK+NM LRQ+VKE MP  A  VFEKCINEKALVLSGK    +A  +   +  E R    LL+EPDFQL+Q LM+SQQNFT+SDP++PDNPIVYASQGFL LTGYTM  VIGRNCRFLQG GTD RA+DIIRRG+A+GRDTSVCL+NY+ADGTPFWNQFF+AALRD   K+VNFVGVQCEV+
Sbjct:  146 RERNREHAKRSRIRKKFMLECLQEQLLAMRKQNMALRQIVKENMPNEAAAVFEKCINEKALVLSGKGTA-SAQPIPSDDEEESRESNCLLLEPDFQLMQALMESQQNFTISDPSMPDNPIVYASQGFLNLTGYTMQNVIGRNCRFLQGQGTDPRAIDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDENEKIVNFVGVQCEVK 354
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A836CJE1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE1_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.290e-98
Identity = 155/212 (73.11%), Postives = 177/212 (83.49%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVRSS 837
            +ERNREHAKRSR+RKKF+LECLQEQL+ LRKENMNLRQ V+E MP VAT +F K ++E+ALVLSG      A +    +A   R+   LLVEPDFQLI  LMDSQQNF VSDP+LPDNPIVYASQGFL LTGYT+DKVIGRNCRFLQGPGTD RAVDIIRRG+++GRDTSVCLLNY+ADG+PFWN FFI+ALRD  G VVNFVGVQ EV+ +
Sbjct:   24 RERNREHAKRSRVRKKFMLECLQEQLLALRKENMNLRQAVQEHMPDVATDIFTKVVSERALVLSGD-----AGSTPQQQAQTSRKPNCLLVEPDFQLISALMDSQQNFAVSDPSLPDNPIVYASQGFLNLTGYTIDKVIGRNCRFLQGPGTDPRAVDIIRRGVSEGRDTSVCLLNYKADGSPFWNNFFISALRDQNGVVVNFVGVQAEVKQA 230
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A126X2H4_9PHAE (Putative LOV domain-containing protein n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A126X2H4_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 3.730e-97
Identity = 156/210 (74.29%), Postives = 178/210 (84.76%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVR 831
            +ERNREHAKRSRIRKKF+LECLQEQL+ +RK+N+ LRQVVKE MP  A  VFEKCINEKALVLSGK    A   L+  E  E +    LL+EPDFQL+Q LM SQQNFT+SDP++PDNPIVYASQGFL LTGYT+  VIGRNCRFLQGPGTD RA+DIIRRG+A+GRDTSVCL+NY+ADGTPFWNQFF+AALRD  GK+VNFVGVQ EV+
Sbjct:  170 RERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAAAVFEKCINEKALVLSGKGTGSAQPILSDDEE-ETKEPNCLLLEPDFQLMQALMASQQNFTISDPSMPDNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRAIDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDDTGKIVNFVGVQGEVQ 378
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A6H5KKT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A6H5KKT9_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 1.310e-92
Identity = 153/220 (69.55%), Postives = 175/220 (79.55%), Query Frame = 1 
Query:  202 QERNREHAKRSRIRKKFLLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVRSSHYSFSFLD 861
            +ERNREHAKRSRIRKKF+LECLQEQL+ +RK+N+ LRQVVKE MP  A  VFEKCINEKALVLSGK  E A   L+  E  E +    LL+EPDFQL+Q LM SQQNFT+SDP++PDNPI     GFL LTGYT+  VIGRNCRFLQGPGTD RA+DIIRRG+A+GRDTSVCL+NY+ADGTPFWNQFF+AALRD  GK+VNFVGVQ EV        F +
Sbjct:  189 RERNREHAKRSRIRKKFMLECLQEQLLAMRKQNLALRQVVKEHMPDEAATVFEKCINEKALVLSGKSTESAQPILSDDEE-ETKEPNCLLLEPDFQLMQALMTSQQNFTISDPSMPDNPI-----GFLTLTGYTIQNVIGRNCRFLQGPGTDPRAIDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDDTGKIVNFVGVQGEVHEESQDRDFRE 402
[Close]
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Match: A0A126X1P8_SACJA (Putative LOV domain-containing protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A126X1P8_SACJA)

HSP 1 Score: 275 bits (704), Expect = 2.590e-88
Identity = 137/203 (67.49%), Postives = 164/203 (80.79%), Query Frame = 1 
Query:  253 LLECLQEQLMLLRKENMNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAERRREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGYTMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPFWNQFFIAALRDAAGKVVNFVGVQCEVRSSHYSFSFLD 861
            +LECLQEQL+ +RK+NM LRQVVKE MP  A  VFEKC++EKAL LSGK    +A A+   +  E +    LL+EPDFQL+Q LM+SQQNFT+SDP++ DNPIVYASQGFL LTGYT+  VIGRNCRFLQGPGTD RA+DIIRRG+A+GRDTSVCL+NY+ADGTPFWNQFF+AALRD  GK+VN+VGVQCEV+       F +
Sbjct:    1 MLECLQEQLLAMRKQNMALRQVVKEHMPNEAATVFEKCVHEKALALSGKGTG-SAQAIQSDDEDESKEPNCLLLEPDFQLMQALMESQQNFTISDPSMADNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRAIDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDDTGKIVNYVGVQCEVQEEAQDREFRE 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5364.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A126X057_SARFS3.510e-10173.33Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A835Z0M1_9STRA7.360e-10174.06Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]
D7FRW8_ECTSI1.400e-10071.82Aureochrome 4 n=2 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A126X320_SARHM6.810e-10073.81Putative LOV domain-containing protein n=4 Tax=Sar... [more]
A0A126WWZ7_9PHAE3.400e-9970.45Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126WZ27_9PHAE5.020e-9973.81Putative LOV domain-containing protein n=1 Tax=Dic... [more]
A0A836CJE1_9STRA1.290e-9873.11Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A126X2H4_9PHAE3.730e-9774.29Putative LOV domain-containing protein n=3 Tax=Scy... [more]
A0A6H5KKT9_9PHAE1.310e-9269.55Uncharacterized protein n=2 Tax=Ectocarpales TaxID... [more]
A0A126X1P8_SACJA2.590e-8867.49Putative LOV domain-containing protein n=3 Tax=Pha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5364contigP-wetherbeei_contig5364:1768..3889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRW8
PFAMsPAS_9
Model size1188
Max annot lvl2759|Eukaryota
KEGG koko:K20715
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009637,GO:0009638,GO:0009657,GO:0009658,GO:0009785,GO:0009881,GO:0009882,GO:0009898,GO:0009902,GO:0009903,GO:0009904,GO:0009986,GO:0009987,GO:0010119,GO:0010155,GO:0010181,GO:0010359,GO:0010360,GO:0010361,GO:0010362,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019750,GO:0022898,GO:0023052,GO:0030522,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032553,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035556,GO:0036094,GO:0036211,GO:0038023,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043271,GO:0043412,GO:0044070,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046777,GO:0048037,GO:0048511,GO:0048519,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051644,GO:0051649,GO:0051656,GO:0051667,GO:0051716,GO:0060089,GO:0065007,GO:0065009,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0104004,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903792,GO:1903959,GO:1903960,GO:1904062
Exons3
Evalue2.29e-101
EggNOG OGsKOG0610@1|root,2QPPH@2759|Eukaryota
Ec32 ortholog descriptionaureochrome 4
Ec32 orthologEc-03_003420.1
EC2.7.11.1
Descriptionnegative regulation of anion channel activity by blue light
Cds size1188
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.4715862-CDS-P-wetherbeei_contig5364:1767..23431683186802.4715862-CDS-P-wetherbeei_contig5364:1767..2343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5364 1768..2343 -
1683186802.4825943-CDS-P-wetherbeei_contig5364:2915..31761683186802.4825943-CDS-P-wetherbeei_contig5364:2915..3176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5364 2916..3176 -
1683186802.4911015-CDS-P-wetherbeei_contig5364:3538..38891683186802.4911015-CDS-P-wetherbeei_contig5364:3538..3889Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5364 3539..3889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5364.2.3prot_P-wetherbeei_contig5364.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5364 1768..3889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5364.2.3

>prot_P-wetherbeei_contig5364.2.3 ID=prot_P-wetherbeei_contig5364.2.3|Name=mRNA_P-wetherbeei_contig5364.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=396bp
ALRLCAKRRLFVCTALPQICVAPRSCRDLILPAMILALPHSRLETAAAWL
LLRSNVGCRPPCRPPAQQERNREHAKRSRIRKKFLLECLQEQLMLLRKEN
MNLRQVVKERMPTVATQVFEKCINEKALVLSGKQVEEAASALAGMEAAER
RREQRLLVEPDFQLIQCLMDSQQNFTVSDPALPDNPIVYASQGFLKLTGY
TMDKVIGRNCRFLQGPGTDQRAVDIIRRGIADGRDTSVCLLNYQADGTPF
WNQFFIAALRDAAGKVVNFVGVQCEVRSSHYSFSFLDLRFGSRGVMVVTG
GKKRVLLGRAKSVTRRVSSSRLMRERFIVLWSGSLTLISQKSGAPGCISC
QFCGFCDIGSGLSQVKELTLAEWTQRLKKLPLPEELMHDEDDNDD*
back to top

mRNA from alignment at P-wetherbeei_contig5364:1768..3889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5364.2.3 ID=mRNA_P-wetherbeei_contig5364.2.3|Name=mRNA_P-wetherbeei_contig5364.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2122bp|location=Sequence derived from alignment at P-wetherbeei_contig5364:1768..3889- (Phaeothamnion wetherbeei SAG_119_79)
GCACTTCGGTTATGTGCAAAGCGGCGGCTTTTCGTCTGCACTGCACTACC
TCAAATTTGCGTGGCTCCGCGCTCCTGCCGTGATCTCATACTCCCGGCTA
TGATTCTTGCGCTCCCGCATTCCCGGTTGGAGACGGCTGCGGCCTGGTTG
TTACTTCGATCGAATGTGGGATGCCGTCCGCCCTGCCGCCCGCCCGCGCA
GCAAGAGCGCAACCGGGAGCACGCGAAGCGGTCGCGGATCCGCAAGAAGT
TTCTGCTGGAGTGCCTCCAGGAACAGCTCATGCTGCTGCGGAAGGAGAAC
ATGAACCTGCGGCAGGTGGTCAAGGAGCGCATGCCCACCGTCGCCACGCA
GGTGAGAAAATGCGAACAGACATGGAAATGGTGGAATGTGAGGCGGGCGA
CCAGCTGACCACAATAGTTTGGTTCTGTCCGGCTCAGCTCAAGCTTTGCG
TTCTTCTGGTCGAGGTCTGGGCCGGCAGATTTCAACGGTTGGTGGATTCG
CTTGTTGTCACTGCCCTGTATGCTGTGGTCGAACAGTTTTTTGAGGAGTG
GAATCGCTTCTTTTTTCTGACTCTTCGAGGCATTGTTATTCTTATGGTTT
TCGCGTACTCGTTCATTAGATGTTGACCCTTATTTCCTGACTGTACACGC
GCCCATTATGCTCGATTTAAACCTACAATCTTTCTTCTTACACCTGGCTT
TCACCCCCCGTAGGTGTTTGAGAAGTGCATCAACGAGAAGGCGCTGGTGC
TGAGCGGGAAGCAGGTGGAGGAGGCGGCGTCGGCGCTGGCGGGGATGGAG
GCAGCGGAGCGGCGGCGGGAGCAGCGGCTGCTGGTGGAGCCGGACTTCCA
GCTCATCCAGTGCCTGATGGACTCGCAGCAAAACTTCACCGTCTCCGACC
CGGCGCTGCCCGACAACCCTATTGTCTACGCCTCTCAGGGCTTCCTCAAG
CTCACCGGATACACCATGGACAAGGTGCGTTGGTTTGTTCTGTTTTCTGT
TGCTTTGCTTTTCGTTGCATTTCTAAAGTGTACCTGTTTTCTTGGATTAG
GTTCCTATATTCGCTTTTGCTCTGCATTTTGTGTACATTCCGGCTTTGCT
TGCATTCTGTTTGCTTGTCTAGACGTTGCTCCCCTGGGGTTCTCTTGTCT
GCGGTTAACTCCCTCTGCTATCGTTTGCTGCTGTAAAGTTCTATGTTGAG
TTTCTAATGGCTGCTAGGATTTCTGCCTGTTTTTGGTGTGTGGTTGCGAT
CCTAATGGGGGAAGAGTGTGACCCTTTTTCCTTTTTGTACAGTGTTGTGG
GCAAAAAAAGAAGAAACAAAGGTGTTTCCATTCAAAGCTAGTATTGCACT
TTCTTTGTCACAGGATGCTCTTAGTTCTCTGTGGCATACGTTTTTGGAGA
CTTAACCATGGATTCAAAAACTGGTGCCTCATCCCCCTCGATGCTTTCTC
TTGTACCTTTTCTCTCTTCTCATCAATGTGATGGCTATCCACACCCGCAT
TACACAATGGCGGCGCTGACAAAATGGAACGAACCGACCCGTGCAGGTGA
TCGGGCGCAACTGCCGGTTCCTGCAGGGTCCTGGCACGGACCAGAGGGCG
GTGGACATCATCCGGCGGGGCATCGCCGATGGCCGCGACACGTCCGTCTG
CCTCCTCAACTACCAGGCGGATGGGACCCCCTTCTGGAACCAGTTCTTCA
TCGCTGCGCTGCGGGACGCCGCTGGCAAGGTGGTCAACTTTGTCGGCGTC
CAGTGCGAGGTGCGTTCGTCCCACTATTCATTCTCCTTTCTTGATTTGAG
ATTCGGTTCGAGAGGAGTCATGGTTGTGACGGGAGGTAAGAAGCGGGTCT
TGTTGGGTCGCGCGAAAAGTGTTACAAGGCGCGTATCATCCAGTCGGCTA
ATGCGAGAGAGATTCATTGTATTGTGGTCCGGCAGTCTTACCTTAATAAG
TCAAAAGAGCGGCGCTCCGGGGTGCATCTCGTGCCAATTCTGCGGTTTCT
GTGATATCGGATCGGGTTTATCACAGGTGAAGGAGCTGACGCTGGCGGAA
TGGACGCAGCGGCTGAAGAAGCTTCCGCTGCCGGAGGAGCTCATGCATGA
CGAAGACGACAACGACGATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5364:1768..3889-

>mRNA_P-wetherbeei_contig5364.2.3 ID=mRNA_P-wetherbeei_contig5364.2.3|Name=mRNA_P-wetherbeei_contig5364.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1188bp|location=Sequence derived from alignment at P-wetherbeei_contig5364:1768..3889- (Phaeothamnion wetherbeei SAG_119_79)
GCACTTCGGTTATGTGCAAAGCGGCGGCTTTTCGTCTGCACTGCACTACC
TCAAATTTGCGTGGCTCCGCGCTCCTGCCGTGATCTCATACTCCCGGCTA
TGATTCTTGCGCTCCCGCATTCCCGGTTGGAGACGGCTGCGGCCTGGTTG
TTACTTCGATCGAATGTGGGATGCCGTCCGCCCTGCCGCCCGCCCGCGCA
GCAAGAGCGCAACCGGGAGCACGCGAAGCGGTCGCGGATCCGCAAGAAGT
TTCTGCTGGAGTGCCTCCAGGAACAGCTCATGCTGCTGCGGAAGGAGAAC
ATGAACCTGCGGCAGGTGGTCAAGGAGCGCATGCCCACCGTCGCCACGCA
GGTGTTTGAGAAGTGCATCAACGAGAAGGCGCTGGTGCTGAGCGGGAAGC
AGGTGGAGGAGGCGGCGTCGGCGCTGGCGGGGATGGAGGCAGCGGAGCGG
CGGCGGGAGCAGCGGCTGCTGGTGGAGCCGGACTTCCAGCTCATCCAGTG
CCTGATGGACTCGCAGCAAAACTTCACCGTCTCCGACCCGGCGCTGCCCG
ACAACCCTATTGTCTACGCCTCTCAGGGCTTCCTCAAGCTCACCGGATAC
ACCATGGACAAGGTGATCGGGCGCAACTGCCGGTTCCTGCAGGGTCCTGG
CACGGACCAGAGGGCGGTGGACATCATCCGGCGGGGCATCGCCGATGGCC
GCGACACGTCCGTCTGCCTCCTCAACTACCAGGCGGATGGGACCCCCTTC
TGGAACCAGTTCTTCATCGCTGCGCTGCGGGACGCCGCTGGCAAGGTGGT
CAACTTTGTCGGCGTCCAGTGCGAGGTGCGTTCGTCCCACTATTCATTCT
CCTTTCTTGATTTGAGATTCGGTTCGAGAGGAGTCATGGTTGTGACGGGA
GGTAAGAAGCGGGTCTTGTTGGGTCGCGCGAAAAGTGTTACAAGGCGCGT
ATCATCCAGTCGGCTAATGCGAGAGAGATTCATTGTATTGTGGTCCGGCA
GTCTTACCTTAATAAGTCAAAAGAGCGGCGCTCCGGGGTGCATCTCGTGC
CAATTCTGCGGTTTCTGTGATATCGGATCGGGTTTATCACAGGTGAAGGA
GCTGACGCTGGCGGAATGGACGCAGCGGCTGAAGAAGCTTCCGCTGCCGG
AGGAGCTCATGCATGACGAAGACGACAACGACGATTGA
back to top