mRNA_P-wetherbeei_contig53611.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53611.1.1
Unique NamemRNA_P-wetherbeei_contig53611.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A2E5M6C0_9GAMM ((2Fe-2S)-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M6C0_9GAMM)

HSP 1 Score: 263 bits (672), Expect = 1.400e-84
Identity = 117/179 (65.36%), Postives = 144/179 (80.45%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY+DP RY  EVER+FKHLP AL LS+E+P  G YRA+ +L+VPVLMVRG+DG  RAFLN CRHRGAK+C  G+   R+F+CPYHAW+YN +G LV+RYA ++FG+VD A  GLTEL CAER+GL++V LT GE  +VD+WLGDFAAEL TL L +WH++ QR L GPGWKV +DGYLE
Sbjct:   34 AYLDPNRYAAEVERIFKHLPLALALSLELPEPGSYRALTMLEVPVLMVRGEDGVVRAFLNVCRHRGAKLCPDGADKTRLFSCPYHAWSYNHRGELVARYAQESFGEVDAATHGLTELACAERSGLIWVSLTPGEQFDVDQWLGDFAAELDTLDLANWHLFEQRVLPGPGWKVTMDGYLE 212          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A381XGL9_9ZZZZ (Rieske domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381XGL9_9ZZZZ)

HSP 1 Score: 251 bits (640), Expect = 6.920e-80
Identity = 108/179 (60.34%), Postives = 135/179 (75.42%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY D  R+ +EVER+FKHLP ALCLS EIP+  DY+A+ VLD+P+L+ R +D   RAFLN CRHRGAK+C+ GSG  R+F+CPYHAW YN +GALV  Y  DTFG++D    GL EL+C ERAGL++  L  GE  ++D+WLGDFA EL +L L +WHI+ QR L+GPGWKV  DGYLE
Sbjct:   29 AYTDRKRFSKEVERIFKHLPIALCLSNEIPDQEDYKAVNVLDIPILITRAQDNKVRAFLNVCRHRGAKVCEEGSGKKRIFSCPYHAWTYNHEGALVGMYGEDTFGNIDQEDYGLLELECQERAGLIWAMLKRGEKFDIDKWLGDFAVELESLDLKNWHIFEQRVLEGPGWKVTFDGYLE 207          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A3C0KZR7_9GAMM (Rieske domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0KZR7_9GAMM)

HSP 1 Score: 247 bits (630), Expect = 3.160e-78
Identity = 105/179 (58.66%), Postives = 137/179 (76.54%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY+DP RYQ E E +FK LP AL L++E+P+ GDY+AM VL+ P+++ R + G  + FLNACRHRG+++C  G G ARVF+CPYHAW Y+ +GAL+ RY A+TFG+VD A   LTEL CAER GL++V LT  +++++D WLGDFAAEL TL L  WH++  R +DGPGWKV LDGYLE
Sbjct:   39 AYIDPARYQAEREGIFKQLPLALALTLELPSPGDYKAMTVLETPIILARNQTGEVKCFLNACRHRGSRLCDDGCGAARVFSCPYHAWTYDAEGALIGRYGAETFGEVDPADFHLTELPCAERCGLIWVTLTPSQSMDIDAWLGDFAAELDTLSLSDWHLHEVRVIDGPGWKVTLDGYLE 217          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A0R2W4D6_9GAMM (Rieske domain-containing protein n=1 Tax=SAR92 bacterium BACL16 MAG-120619-bin48 TaxID=1655625 RepID=A0A0R2W4D6_9GAMM)

HSP 1 Score: 243 bits (619), Expect = 1.570e-76
Identity = 105/179 (58.66%), Postives = 138/179 (77.09%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY D  RY  E+ER+FK LP A  LS+E+P+AG YRAM +L VP+L+VRG+D   RA LN C HRGA++C+ G+GT ++ TCPYHAW+Y+D+G L+ RY A+TFGD+D A  GLT L C E+AG+++V LTAG+  ++D WLGDF  EL TL LD+WH+Y QR++ GPGWKV +DGYLE
Sbjct:   34 AYRDLDRYADEIERIFKQLPLAAALSLELPSAGSYRAMNLLGVPLLLVRGEDMQVRAMLNVCSHRGAQLCKIGAGTQKMITCPYHAWSYDDRGDLIGRYGANTFGDIDAADYGLTRLHCEEKAGIIWVCLTAGKVFDIDTWLGDFGDELNTLDLDNWHMYDQRDIAGPGWKVTMDGYLE 212          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A293NNG9_9GAMM (Rieske (2Fe-2S) protein n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A293NNG9_9GAMM)

HSP 1 Score: 243 bits (619), Expect = 1.570e-76
Identity = 107/179 (59.78%), Postives = 133/179 (74.30%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY D  RY REVERVFKHLP AL LS+E+P  G ++AM VL VP+L+VRG+D   RA LN CRHRGA++C+ GSG  R+F CPYHAW Y+ +GAL  RY  DTFG++ +   GLT L C ER+G+V+  LT G+  +VD WLGDF  EL TL L++WH+Y QR+L GPGWKV +DGYLE
Sbjct:   34 AYRDEERYSREVERVFKHLPLALALSLELPEVGSFKAMTVLGVPLLIVRGEDLKVRAMLNVCRHRGARLCEDGSGKKRIFACPYHAWTYDHKGALKGRYGGDTFGEIANDRYGLTALHCVERSGIVWASLTPGDFFDVDAWLGDFGDELNTLDLENWHLYEQRDLPGPGWKVTMDGYLE 212          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A1B6Z0Q9_9RHOB (Rieske domain-containing protein n=2 Tax=Jannaschia sp. EhC01 TaxID=1849359 RepID=A0A1B6Z0Q9_9RHOB)

HSP 1 Score: 238 bits (606), Expect = 9.900e-75
Identity = 107/179 (59.78%), Postives = 129/179 (72.07%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY DP RY  EVE++FK LP AL +SIEI     Y A +V+  PV++ R  DG A AFLNACRHRGA +C HG G AR F+CPYHAW Y+ +GAL+S Y   TFGDVD   L L EL C ER+G+V+V LT G+  ++D WLGDFA EL TL L +WH+Y QR++DGPGWKVA DGYLE
Sbjct:   33 AYTDPVRYAHEVEKIFKELPLALAMSIEIAEPNSYTATEVVGTPVIVTRDADGKAHAFLNACRHRGAPVCAHGRGEARQFSCPYHAWVYDMKGALISMYGGKTFGDVDPDKLALNELPCEERSGMVWVCLTPGKTFDIDAWLGDFAYELDTLDLANWHLYEQRDIDGPGWKVAWDGYLE 211          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A523FJ79_9PROT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FJ79_9PROT)

HSP 1 Score: 238 bits (606), Expect = 1.140e-74
Identity = 105/181 (58.01%), Postives = 134/181 (74.03%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQ--HGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY+D  R+  E++R+FKHLP A+ LS+E+PN GDYRA+  + VPVLM+RGKDG ARAF+NACRHRGA +C+  HG   +   TCPYHAW Y+ +G LV  + A TFGD+D    GLTEL C E +G ++V LT GE  N+D+WLGDFA  L TL+L+ W++Y QRE+ GPGWKV  DGYLE
Sbjct:   39 AYLDQDRFDHEIDRIFKHLPLAMALSLELPNPGDYRALTKMGVPVLMMRGKDGKARAFINACRHRGAPLCEDGHGGTASGKLTCPYHAWTYDTEGKLVGMFGASTFGDLDRETAGLTELFCEEHSGFIWVILTPGERHNMDDWLGDFAERLQTLELEDWYLYDQREIPGPGWKVTWDGYLE 219          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A2E5VDP7_9GAMM (Rieske domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5VDP7_9GAMM)

HSP 1 Score: 237 bits (605), Expect = 1.860e-74
Identity = 105/179 (58.66%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AYVDP RY+ E+ R++K LP ALCLS E+P+   YRAM V+D PVL+ R +D   RAFLN CRHRG+ +C+ GSG  R F CPYHAW YN +G L+  Y   TFG++D    GL EL+C+E AGLV+V L+     N++EWLGDFA EL TL L  W+I+ QREL+GPGWKVALDGYLE
Sbjct:   40 AYVDPKRYENEINRIYKKLPLALCLSSELPSKNTYRAMNVVDTPVLITRSEDMKTRAFLNVCRHRGSPVCKEGSGEIRNFICPYHAWTYNHEGKLIGMYGEKTFGEIDKEEFGLVELECSESAGLVWVMLSPEIKFNINEWLGDFALELETLNLQDWYIFDQRELEGPGWKVALDGYLE 218          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A2U2C703_9RHOB (Rieske (2Fe-2S) protein n=1 Tax=Pararhodobacter marinus TaxID=2184063 RepID=A0A2U2C703_9RHOB)

HSP 1 Score: 236 bits (603), Expect = 2.890e-74
Identity = 110/179 (61.45%), Postives = 131/179 (73.18%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY DP RY+ EVERVF+  P AL LSIEI     YRA +V   PV++ R  +G A AFLNACRHRGA +C  G G AR F+CPYHAW Y+ +GALVS Y   TFGDVD   +GL EL C E+AGLV+V LT G++ ++DEWLGDFAAEL TL L +W++Y QR+L GPGWKVA DGYLE
Sbjct:   37 AYTDPDRYRHEVERVFREQPLALVLSIEIATPNSYRATEVCGTPVIVTRDGEGKAHAFLNACRHRGAPVCADGRGEARQFSCPYHAWVYDTKGALVSMYGGKTFGDVDIEKMGLRELPCVEKAGLVWVCLTPGKSFDIDEWLGDFAAELETLDLGNWYLYDQRDLPGPGWKVAWDGYLE 215          
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Match: A0A3S5JX01_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=2 Tax=Cellvibrionales TaxID=1706369 RepID=A0A3S5JX01_9GAMM)

HSP 1 Score: 236 bits (603), Expect = 3.230e-74
Identity = 105/179 (58.66%), Postives = 131/179 (73.18%), Query Frame = 1
Query:    1 AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRGKDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYAADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELGTLQLDSWHIYAQRELDGPGWKVALDGYLE 537
            AY D  RY RE+ERVFKHLP AL LS+E+  AG Y+AM V+ VPVL+VRG+D   RA LN CRHRGAK+C  G+G  RVF CPYHAW Y+ +G+L  RY  DTFG++ +   GLT L C ER+G+++  LT G+  +VD WLGDF  EL TL L +WH++ QR+L GPGWKV +DGYLE
Sbjct:   34 AYRDEERYAREIERVFKHLPLALALSLELSEAGSYKAMTVMGVPVLIVRGEDLKIRAMLNVCRHRGAKLCADGAGKKRVFACPYHAWTYDHKGSLKGRYGGDTFGEIANDQYGLTVLHCEERSGIIWASLTPGDFFDVDAWLGDFGEELNTLDLKNWHLFEQRDLPGPGWKVTMDGYLE 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53611.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5M6C0_9GAMM1.400e-8465.36(2Fe-2S)-binding protein n=1 Tax=Gammaproteobacter... [more]
A0A381XGL9_9ZZZZ6.920e-8060.34Rieske domain-containing protein n=1 Tax=marine me... [more]
A0A3C0KZR7_9GAMM3.160e-7858.66Rieske domain-containing protein n=2 Tax=Gammaprot... [more]
A0A0R2W4D6_9GAMM1.570e-7658.66Rieske domain-containing protein n=1 Tax=SAR92 bac... [more]
A0A293NNG9_9GAMM1.570e-7659.78Rieske (2Fe-2S) protein n=2 Tax=Porticoccaceae bac... [more]
A0A1B6Z0Q9_9RHOB9.900e-7559.78Rieske domain-containing protein n=2 Tax=Jannaschi... [more]
A0A523FJ79_9PROT1.140e-7458.01Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2E5VDP7_9GAMM1.860e-7458.66Rieske domain-containing protein n=1 Tax=Gammaprot... [more]
A0A2U2C703_9RHOB2.890e-7461.45Rieske (2Fe-2S) protein n=1 Tax=Pararhodobacter ma... [more]
A0A3S5JX01_9GAMM3.230e-7458.66Aromatic ring-hydroxylating dioxygenase subunit al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53611contigP-wetherbeei_contig53611:1..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1172181.KB911714_gene4779
PFAMsRieske,Ring_hydroxyl_A
Model size537
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-73
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,2GKJY@201174|Actinobacteria
DescriptionRieske 2Fe-2S
Cds size537
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.0677555-CDS-P-wetherbeei_contig53611:0..5371683186802.0677555-CDS-P-wetherbeei_contig53611:0..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53611 1..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53611.1.1prot_P-wetherbeei_contig53611.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53611 1..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53611.1.1

>prot_P-wetherbeei_contig53611.1.1 ID=prot_P-wetherbeei_contig53611.1.1|Name=mRNA_P-wetherbeei_contig53611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
AYVDPTRYQREVERVFKHLPQALCLSIEIPNAGDYRAMQVLDVPVLMVRG
KDGTARAFLNACRHRGAKICQHGSGTARVFTCPYHAWAYNDQGALVSRYA
ADTFGDVDHAGLGLTELDCAERAGLVYVKLTAGEALNVDEWLGDFAAELG
TLQLDSWHIYAQRELDGPGWKVALDGYLE
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mRNA from alignment at P-wetherbeei_contig53611:1..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53611.1.1 ID=mRNA_P-wetherbeei_contig53611.1.1|Name=mRNA_P-wetherbeei_contig53611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53611:1..537- (Phaeothamnion wetherbeei SAG_119_79)
GCCTATGTCGATCCCACGCGCTATCAGCGTGAAGTCGAACGGGTGTTCAA GCATCTGCCGCAGGCCTTGTGCTTGAGTATCGAGATTCCGAATGCGGGCG ACTATCGCGCCATGCAGGTGTTGGACGTGCCGGTGCTGATGGTGCGCGGC AAGGACGGCACGGCGCGCGCCTTCCTGAACGCCTGTCGTCATCGCGGCGC CAAGATCTGTCAGCATGGCAGCGGCACTGCGCGGGTCTTCACCTGCCCTT ATCACGCCTGGGCCTATAACGATCAAGGTGCCTTGGTCAGCCGCTACGCG GCCGACACCTTTGGCGATGTCGATCACGCAGGTCTGGGCTTGACCGAACT CGACTGCGCAGAACGCGCCGGCCTCGTCTACGTCAAGCTCACAGCCGGCG AAGCGCTCAACGTCGACGAATGGCTAGGCGACTTCGCCGCCGAACTCGGC ACTTTGCAACTCGACAGCTGGCATATCTATGCCCAGCGCGAACTCGATGG ACCCGGTTGGAAGGTGGCGCTCGACGGTTATCTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53611:1..537-

>mRNA_P-wetherbeei_contig53611.1.1 ID=mRNA_P-wetherbeei_contig53611.1.1|Name=mRNA_P-wetherbeei_contig53611.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53611:1..537- (Phaeothamnion wetherbeei SAG_119_79)
GCCTATGTCGATCCCACGCGCTATCAGCGTGAAGTCGAACGGGTGTTCAA
GCATCTGCCGCAGGCCTTGTGCTTGAGTATCGAGATTCCGAATGCGGGCG
ACTATCGCGCCATGCAGGTGTTGGACGTGCCGGTGCTGATGGTGCGCGGC
AAGGACGGCACGGCGCGCGCCTTCCTGAACGCCTGTCGTCATCGCGGCGC
CAAGATCTGTCAGCATGGCAGCGGCACTGCGCGGGTCTTCACCTGCCCTT
ATCACGCCTGGGCCTATAACGATCAAGGTGCCTTGGTCAGCCGCTACGCG
GCCGACACCTTTGGCGATGTCGATCACGCAGGTCTGGGCTTGACCGAACT
CGACTGCGCAGAACGCGCCGGCCTCGTCTACGTCAAGCTCACAGCCGGCG
AAGCGCTCAACGTCGACGAATGGCTAGGCGACTTCGCCGCCGAACTCGGC
ACTTTGCAACTCGACAGCTGGCATATCTATGCCCAGCGCGAACTCGATGG
ACCCGGTTGGAAGGTGGCGCTCGACGGTTATCTCGAG
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