mRNA_P-wetherbeei_contig5360.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5360.5.1
Unique NamemRNA_P-wetherbeei_contig5360.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A835YT34_9STRA (DUF1394 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT34_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.370e-14
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSALDA 150
            VS+CIKVL+KHGG  G QL NCI Y+TKHFNS+TTP  IR AL A
Sbjct:  261 VSRCIKVLNKHGGDAGLQLRNCIMYATKHFNSETTPNNIRRALQA 305
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: D7G5C5_ECTSI (DUF1394 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.790e-12
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            VSKCIKVL++HGG TGEQL   ++YST H+NSDTTP+ IR AL
Sbjct:  283 VSKCIKVLNRHGGATGEQLRATLRYSTMHYNSDTTPKNIRDAL 325
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A8B7PMY8_HYAAZ (protein FAM49B-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PMY8_HYAAZ)

HSP 1 Score: 49.3 bits (116), Expect = 1.970e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            V  CIKVL +    + E L+N ++Y+TKH N D+TP+ IR+ L
Sbjct:  294 VKGCIKVLKEQPASSSENLLNALRYTTKHLNDDSTPKHIRTLL 336
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A0P4WEX5_SCYOL (DUF1394 domain-containing protein n=2 Tax=Portunidae TaxID=6757 RepID=A0A0P4WEX5_SCYOL)

HSP 1 Score: 49.3 bits (116), Expect = 1.970e-5
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            V  C+KVL      + E L+N ++Y+TKH N D+TP+ IRS L
Sbjct:  295 VKGCVKVLKDQPASSSENLLNALRYTTKHLNDDSTPKHIRSLL 337
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A6A0H8I5_HYAAZ (Uncharacterized protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H8I5_HYAAZ)

HSP 1 Score: 49.3 bits (116), Expect = 1.980e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            V  CIKVL +    + E L+N ++Y+TKH N D+TP+ IR+ L
Sbjct:  314 VKGCIKVLKEQPASSSENLLNALRYTTKHLNDDSTPKHIRTLL 356
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A8J4XPK9_CHIOP (Protein FAM49B n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4XPK9_CHIOP)

HSP 1 Score: 48.9 bits (115), Expect = 2.700e-5
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            V  C+KVL      + E L+N ++Y+TKH N D TP+ IRS L
Sbjct:  288 VKGCVKVLKDQPASSSENLLNALRYTTKHLNDDNTPKHIRSLL 330
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A2P2HY84_9CRUS (Protein FAM49B-like n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2HY84_9CRUS)

HSP 1 Score: 48.9 bits (115), Expect = 2.700e-5
Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            V  C+KVL +    + E L+N ++Y+TKH N D+TP+ IR+ L
Sbjct:  295 VKGCVKVLKEQPASSSENLLNALRYTTKHLNDDSTPKHIRTLL 337
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A8J2QF41_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2QF41_9NEOP)

HSP 1 Score: 46.2 bits (108), Expect = 4.250e-5
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSALDA 150
            V  C+K L +      E L+N ++Y+TKH NS +TP  IRS L A
Sbjct:   49 VKGCVKFLQQQPPPKAEPLLNALRYTTKHLNSQSTPRNIRSLLAA 93
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A1S8W0D2_9FUNG (DUF1394 domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0D2_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 5.020e-5
Identity = 17/43 (39.53%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            +   +KV+   GGQ  + L+N ++YST+HFN +TTP+  +  L
Sbjct:  269 IKSSVKVIQSTGGQASDMLLNLLRYSTQHFNDETTPKSTKQLL 311
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BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Match: A0A3R7LVG6_PENVA (DUF1394 domain-containing protein n=2 Tax=Penaeus TaxID=133894 RepID=A0A3R7LVG6_PENVA)

HSP 1 Score: 45.8 bits (107), Expect = 6.790e-5
Identity = 17/43 (39.53%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   16 VSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSAL 144
            V  C+KVL      + E L+N ++Y+TKH N + TP++I++ L
Sbjct:   55 VKGCVKVLKDQPASSSENLLNALRYTTKHLNDENTPKQIKTLL 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5360.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YT34_9STRA8.370e-1471.11DUF1394 domain-containing protein n=1 Tax=Tribonem... [more]
D7G5C5_ECTSI1.790e-1269.77DUF1394 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A8B7PMY8_HYAAZ1.970e-546.51protein FAM49B-like n=1 Tax=Hyalella azteca TaxID=... [more]
A0A0P4WEX5_SCYOL1.970e-546.51DUF1394 domain-containing protein n=2 Tax=Portunid... [more]
A0A6A0H8I5_HYAAZ1.980e-546.51Uncharacterized protein n=1 Tax=Hyalella azteca Ta... [more]
A0A8J4XPK9_CHIOP2.700e-546.51Protein FAM49B n=1 Tax=Chionoecetes opilio TaxID=4... [more]
A0A2P2HY84_9CRUS2.700e-544.19Protein FAM49B-like n=1 Tax=Hirondellea gigas TaxI... [more]
A0A8J2QF41_9NEOP4.250e-544.44(African queen) hypothetical protein n=1 Tax=Danau... [more]
A0A1S8W0D2_9FUNG5.020e-539.53DUF1394 domain-containing protein n=1 Tax=Batracho... [more]
A0A3R7LVG6_PENVA6.790e-539.53DUF1394 domain-containing protein n=2 Tax=Penaeus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5360contigP-wetherbeei_contig5360:3739..3891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5C5
Preferred nameFAM49B
PFAMsDUF1394
Model size153
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001817,GO:0001819,GO:0001910,GO:0001912,GO:0001914,GO:0001916,GO:0002576,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0022407,GO:0022409,GO:0023023,GO:0023025,GO:0023029,GO:0023030,GO:0030141,GO:0030155,GO:0031091,GO:0031093,GO:0031341,GO:0031343,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032649,GO:0032729,GO:0032940,GO:0034774,GO:0042287,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045785,GO:0046903,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060205,GO:0065007,GO:0070013,GO:0097708,GO:0099503,GO:0120025,GO:1903037,GO:1903039,GO:2000567,GO:2000568
Exons1
Evalue2.94e-13
EggNOG OGsKOG3951@1|root,KOG3951@2759|Eukaryota
Descriptionpositive regulation of memory T cell activation
Cds size153
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.8421304-CDS-P-wetherbeei_contig5360:3738..38911683186801.8421304-CDS-P-wetherbeei_contig5360:3738..3891Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5360 3739..3891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5360.5.1prot_P-wetherbeei_contig5360.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5360 3739..3891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5360.5.1

>prot_P-wetherbeei_contig5360.5.1 ID=prot_P-wetherbeei_contig5360.5.1|Name=mRNA_P-wetherbeei_contig5360.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
GACAQVSKCIKVLHKHGGQTGEQLMNCIKYSTKHFNSDTTPEKIRSALDA
*
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mRNA from alignment at P-wetherbeei_contig5360:3739..3891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5360.5.1 ID=mRNA_P-wetherbeei_contig5360.5.1|Name=mRNA_P-wetherbeei_contig5360.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig5360:3739..3891- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCTGTGCGCAGGTATCCAAGTGTATTAAGGTGCTGCACAAGCACGG
GGGCCAGACGGGGGAGCAGCTCATGAACTGCATCAAATATTCGACCAAGC
ACTTCAACTCGGACACCACGCCCGAGAAGATCCGCAGCGCGCTCGATGCA
TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5360:3739..3891-

>mRNA_P-wetherbeei_contig5360.5.1 ID=mRNA_P-wetherbeei_contig5360.5.1|Name=mRNA_P-wetherbeei_contig5360.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig5360:3739..3891- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCTGTGCGCAGGTATCCAAGTGTATTAAGGTGCTGCACAAGCACGG
GGGCCAGACGGGGGAGCAGCTCATGAACTGCATCAAATATTCGACCAAGC
ACTTCAACTCGGACACCACGCCCGAGAAGATCCGCAGCGCGCTCGATGCA
TGA
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