mRNA_P-wetherbeei_contig5360.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5360.4.1
Unique NamemRNA_P-wetherbeei_contig5360.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5360.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5360contigP-wetherbeei_contig5360:3169..3638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.8001895-UTR-P-wetherbeei_contig5360:3168..32871683186801.8001895-UTR-P-wetherbeei_contig5360:3168..3287Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5360 3169..3287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.8099418-CDS-P-wetherbeei_contig5360:3287..36381683186801.8099418-CDS-P-wetherbeei_contig5360:3287..3638Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5360 3288..3638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5360.4.1prot_P-wetherbeei_contig5360.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5360 3288..3638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5360.4.1

>prot_P-wetherbeei_contig5360.4.1 ID=prot_P-wetherbeei_contig5360.4.1|Name=mRNA_P-wetherbeei_contig5360.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
GRSGVGAELGGTAADGSEKILGVAPRAKLASSKQRGCSKAGGELRGARRQ
TTCRGAERAAAAAAAGFAEVHWSCRGGHLTERKLFPTGELAAACVVIAGI
AAPREALSIRNESDDN*
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mRNA from alignment at P-wetherbeei_contig5360:3169..3638-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5360.4.1 ID=mRNA_P-wetherbeei_contig5360.4.1|Name=mRNA_P-wetherbeei_contig5360.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=470bp|location=Sequence derived from alignment at P-wetherbeei_contig5360:3169..3638- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGAGCGGGGTGGGGGCAGAGCTGGGCGGAACGGCGGCAGACGGTTC
CGAGAAAATTCTTGGAGTGGCACCACGGGCGAAGTTGGCGAGCAGCAAAC
AGCGAGGTTGCAGTAAGGCGGGCGGAGAGCTGCGTGGCGCCCGCCGCCAG
ACAACCTGCCGCGGAGCGGAGCGAGCCGCGGCAGCGGCTGCGGCGGGCTT
TGCGGAAGTCCATTGGAGCTGCCGCGGCGGGCACTTAACGGAGAGGAAGT
TGTTTCCGACTGGTGAGCTGGCTGCGGCTTGTGTGGTGATTGCAGGGATT
GCGGCACCGCGCGAAGCTCTGTCCATTAGAAACGAAAGCGACGACAATTG
ACGGCAGTAGTGAGCTCTGCCTGCGTTGGCTGCTCTTTTCTTGGTTGTCT
TATCGCTTAGGTTAACGTTTGAAGGGTAGCTACTTGTGCAGGATGACTAC
CAAGATCTTTTCGCGGATTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5360:3169..3638-

>mRNA_P-wetherbeei_contig5360.4.1 ID=mRNA_P-wetherbeei_contig5360.4.1|Name=mRNA_P-wetherbeei_contig5360.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig5360:3169..3638- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGAGCGGGGTGGGGGCAGAGCTGGGCGGAACGGCGGCAGACGGTTC
CGAGAAAATTCTTGGAGTGGCACCACGGGCGAAGTTGGCGAGCAGCAAAC
AGCGAGGTTGCAGTAAGGCGGGCGGAGAGCTGCGTGGCGCCCGCCGCCAG
ACAACCTGCCGCGGAGCGGAGCGAGCCGCGGCAGCGGCTGCGGCGGGCTT
TGCGGAAGTCCATTGGAGCTGCCGCGGCGGGCACTTAACGGAGAGGAAGT
TGTTTCCGACTGGTGAGCTGGCTGCGGCTTGTGTGGTGATTGCAGGGATT
GCGGCACCGCGCGAAGCTCTGTCCATTAGAAACGAAAGCGACGACAATTG
A
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