mRNA_P-wetherbeei_contig5359.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5359.1.1
Unique NamemRNA_P-wetherbeei_contig5359.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5359contigP-wetherbeei_contig5359:1920..3636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1717
Hectar predicted targeting categoryother localisation
Exons1
Cds size1245
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.3637786-UTR-P-wetherbeei_contig5359:1919..23911683186801.3637786-UTR-P-wetherbeei_contig5359:1919..2391Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5359 1920..2391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.3742826-CDS-P-wetherbeei_contig5359:2391..36361683186801.3742826-CDS-P-wetherbeei_contig5359:2391..3636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5359 2392..3636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5359.1.1prot_P-wetherbeei_contig5359.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5359 2392..3636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5359.1.1

>prot_P-wetherbeei_contig5359.1.1 ID=prot_P-wetherbeei_contig5359.1.1|Name=mRNA_P-wetherbeei_contig5359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=415bp
MNGAEASHRCTCAHCPVHGVAIQQLEARATEGSPNAKSVEDPLYLLAVTS
LERSRLASEEGGLVPHLLSALDSDASRGFNPSENAVVDGSFVASAAPEPS
RRVPSKAEARKGRAPACGDDLVGDAGDEGAAAEVEKGTYGNGDYGASTRT
TTRRTSGRKRKAPAASDADPAPAANGAAVAGADVVEVDANPSFAREAATA
AAGHHDDEDDDDEGRPPEPQPALSPRLEAFSGWDWWSEGMMGGHSPRWNI
SPSPMGMSWVLPPSIDPVALHQIQQQQLQMQAAAAAAAAATAEPQHVHHV
VGTPRGRGGCRVGGGSGIGMLGGISPLAGAHLWPPVGSSSASEAAEAAVA
TAEVVAAAAAAAADSRRAASNMHTVLPMRLRKTEGVEEKAYPSSSMPASA
AAPPAAQGGAAAAAA
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mRNA from alignment at P-wetherbeei_contig5359:1920..3636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5359.1.1 ID=mRNA_P-wetherbeei_contig5359.1.1|Name=mRNA_P-wetherbeei_contig5359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1717bp|location=Sequence derived from alignment at P-wetherbeei_contig5359:1920..3636+ (Phaeothamnion wetherbeei SAG_119_79)
ACGAGCACTCACTTTCTACTTGAGAACGGCGGTTTGACGTACGTTCTACT
GCGCTCTCAAGGGCACTGAAAGCCGGGGAAAAAACACAAATTCCAAATTT
GTCATTTTCCGTTGCTAGGCAAGTCCGCCTAGAGTGGAAATTTTCAAGAC
CTTGGTGGTCTGGTTATTTTGGCCTGCACGTTTAGAGCTGCAAGGCTGCA
TTTTCTAGGCCAAAACGGGCCCTCAACGCTGTCGCCTCTTGAGACGGTCC
AACTCCCAACCGAAAAGGGGATTGCGTTGGGCAAATTTTCGACCATTTCT
GGAACCTGCCGCGAGGAAAGGAGGCACGCAGATCCAGCAAACGATTACTG
AATAATAGTGCAGCTGTTGGCGAGGCCGAAATCGCATCCCAGGGCGGATC
GGTGAAAGATCTTCATCCGTGGACGCCTCGACCAAGGCGGAAGCCGTCGC
CGGATCCGCGGCAGGGGCAACAATGAATGGCGCAGAGGCATCGCACCGCT
GCACCTGTGCTCACTGCCCCGTGCACGGCGTGGCGATCCAGCAGCTGGAG
GCACGGGCGACCGAGGGCAGCCCCAACGCAAAGTCGGTTGAAGACCCGCT
TTACCTGCTGGCCGTCACGTCTTTGGAGAGGAGCAGGCTCGCGTCGGAGG
AAGGAGGCCTCGTCCCGCACCTCTTGAGCGCGCTTGATAGCGACGCGTCC
CGCGGCTTCAACCCGTCTGAGAATGCCGTTGTGGACGGTTCATTTGTCGC
GTCGGCGGCGCCGGAGCCCTCTCGCCGCGTGCCTTCAAAGGCCGAGGCGA
GGAAGGGCCGGGCACCGGCCTGCGGCGACGATCTCGTCGGCGACGCCGGG
GACGAGGGCGCTGCCGCCGAAGTGGAAAAGGGCACCTACGGCAACGGCGA
CTATGGCGCGTCCACCCGCACGACGACGCGCCGCACTTCCGGCCGGAAGC
GCAAGGCGCCCGCCGCCAGCGATGCCGACCCGGCCCCGGCGGCCAATGGC
GCCGCCGTCGCGGGAGCCGATGTCGTCGAAGTCGACGCAAACCCTTCATT
CGCTAGAGAGGCCGCCACCGCCGCCGCTGGCCACCACGACGACGAGGACG
ACGACGACGAAGGCCGGCCGCCCGAACCTCAGCCGGCGCTGTCGCCGCGA
CTGGAGGCTTTCTCCGGCTGGGACTGGTGGTCGGAAGGGATGATGGGTGG
GCACTCGCCGCGGTGGAACATCAGCCCGTCCCCGATGGGCATGTCGTGGG
TCCTGCCGCCGTCCATCGACCCTGTCGCGCTCCACCAGATCCAGCAGCAG
CAGCTGCAGATGCAGGCGGCGGCTGCTGCGGCCGCTGCTGCCACCGCCGA
GCCACAACACGTGCACCACGTGGTGGGAACGCCGCGCGGGAGGGGGGGCT
GCCGCGTCGGCGGCGGCAGCGGCATTGGCATGCTCGGCGGCATCTCGCCG
CTTGCGGGGGCTCACCTTTGGCCGCCGGTAGGGTCGTCGTCGGCCTCTGA
AGCGGCCGAAGCTGCGGTGGCGACTGCAGAGGTGGTGGCGGCGGCGGCTG
CGGCGGCAGCGGACTCGCGGCGGGCGGCCTCCAACATGCACACCGTGCTC
CCGATGCGGCTGCGGAAGACGGAAGGCGTGGAGGAGAAGGCGTACCCGTC
GTCATCGATGCCGGCATCGGCGGCGGCACCTCCGGCGGCTCAGGGCGGGG
CGGCAGCGGCCGCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5359:1920..3636+

>mRNA_P-wetherbeei_contig5359.1.1 ID=mRNA_P-wetherbeei_contig5359.1.1|Name=mRNA_P-wetherbeei_contig5359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1245bp|location=Sequence derived from alignment at P-wetherbeei_contig5359:1920..3636+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGGCGCAGAGGCATCGCACCGCTGCACCTGTGCTCACTGCCCCGT
GCACGGCGTGGCGATCCAGCAGCTGGAGGCACGGGCGACCGAGGGCAGCC
CCAACGCAAAGTCGGTTGAAGACCCGCTTTACCTGCTGGCCGTCACGTCT
TTGGAGAGGAGCAGGCTCGCGTCGGAGGAAGGAGGCCTCGTCCCGCACCT
CTTGAGCGCGCTTGATAGCGACGCGTCCCGCGGCTTCAACCCGTCTGAGA
ATGCCGTTGTGGACGGTTCATTTGTCGCGTCGGCGGCGCCGGAGCCCTCT
CGCCGCGTGCCTTCAAAGGCCGAGGCGAGGAAGGGCCGGGCACCGGCCTG
CGGCGACGATCTCGTCGGCGACGCCGGGGACGAGGGCGCTGCCGCCGAAG
TGGAAAAGGGCACCTACGGCAACGGCGACTATGGCGCGTCCACCCGCACG
ACGACGCGCCGCACTTCCGGCCGGAAGCGCAAGGCGCCCGCCGCCAGCGA
TGCCGACCCGGCCCCGGCGGCCAATGGCGCCGCCGTCGCGGGAGCCGATG
TCGTCGAAGTCGACGCAAACCCTTCATTCGCTAGAGAGGCCGCCACCGCC
GCCGCTGGCCACCACGACGACGAGGACGACGACGACGAAGGCCGGCCGCC
CGAACCTCAGCCGGCGCTGTCGCCGCGACTGGAGGCTTTCTCCGGCTGGG
ACTGGTGGTCGGAAGGGATGATGGGTGGGCACTCGCCGCGGTGGAACATC
AGCCCGTCCCCGATGGGCATGTCGTGGGTCCTGCCGCCGTCCATCGACCC
TGTCGCGCTCCACCAGATCCAGCAGCAGCAGCTGCAGATGCAGGCGGCGG
CTGCTGCGGCCGCTGCTGCCACCGCCGAGCCACAACACGTGCACCACGTG
GTGGGAACGCCGCGCGGGAGGGGGGGCTGCCGCGTCGGCGGCGGCAGCGG
CATTGGCATGCTCGGCGGCATCTCGCCGCTTGCGGGGGCTCACCTTTGGC
CGCCGGTAGGGTCGTCGTCGGCCTCTGAAGCGGCCGAAGCTGCGGTGGCG
ACTGCAGAGGTGGTGGCGGCGGCGGCTGCGGCGGCAGCGGACTCGCGGCG
GGCGGCCTCCAACATGCACACCGTGCTCCCGATGCGGCTGCGGAAGACGG
AAGGCGTGGAGGAGAAGGCGTACCCGTCGTCATCGATGCCGGCATCGGCG
GCGGCACCTCCGGCGGCTCAGGGCGGGGCGGCAGCGGCCGCAGCC
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