mRNA_P-wetherbeei_contig53562.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53562.1.1
Unique NamemRNA_P-wetherbeei_contig53562.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A3N5N3W8_9PROT (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5N3W8_9PROT)

HSP 1 Score: 233 bits (593), Expect = 1.820e-72
Identity = 116/154 (75.32%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYELFF DAEKAARLLDITLT RG+S GEPI+MAGVPYHAVEQYLAKLVK GE V ICEQ+GDP T+KGPVER+V RIVTPGTLTD+ALLDD+RDN+L+ + + +  +G+AWL+LAAGR    E    NL+AELERLRPAEVLIAE
Sbjct:   16 LLFYRMGDFYELFFDDAEKAARLLDITLTTRGSSAGEPIRMAGVPYHAVEQYLAKLVKCGEPVVICEQVGDPATAKGPVERQVTRIVTPGTLTDAALLDDRRDNILMCIAEAEKKLGVAWLSLAAGRLGVLETDHANLSAELERLRPAEVLIAE 169
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A2M7J207_9PROT (DNA mismatch repair protein MutS (Fragment) n=2 Tax=Nitrosomonadales TaxID=32003 RepID=A0A2M7J207_9PROT)

HSP 1 Score: 230 bits (587), Expect = 1.930e-72
Identity = 117/154 (75.97%), Postives = 135/154 (87.66%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYELFF DAE+AA+LLDITLT RG SNG+PIKMAGVPYHA EQYLA+LVKLGESVAICEQIGDP TSKGPVERKV+RIVTPGT+TDSALL +KRD+LLL L Q    +G+AWL L++G+F  +E  A NL+AELERL+PAE+L AE
Sbjct:   36 LLFYRMGDFYELFFEDAERAAKLLDITLTQRGTSNGQPIKMAGVPYHAAEQYLARLVKLGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDSALLAEKRDSLLLGLHQHHGKLGLAWLNLSSGQFFVSETDADNLSAELERLQPAEILHAE 189
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A849T8W0_9PROT (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A849T8W0_9PROT)

HSP 1 Score: 231 bits (588), Expect = 4.150e-72
Identity = 116/154 (75.32%), Postives = 136/154 (88.31%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYELF  DA +AA+LLDITLT RG SNG+PIKMAGVPYHA EQYLA+LVK+GES+AICEQIGDP TSKGPVERKV+RIVTPGT+TDSALL++KRD+LLLAL Q+ N VG+AWL LA+G+F  TEI A  L AELERL+P+E+L +E
Sbjct:   28 LLFYRMGDFYELFHEDAARAAKLLDITLTHRGNSNGQPIKMAGVPYHAAEQYLARLVKMGESIAICEQIGDPATSKGPVERKVVRIVTPGTVTDSALLEEKRDSLLLALHQRNNEVGLAWLNLASGQFTLTEIAAKQLPAELERLQPSEILHSE 181
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A1F4DA17_9PROT (DNA mismatch repair protein MutS n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DA17_9PROT)

HSP 1 Score: 240 bits (612), Expect = 7.700e-72
Identity = 121/154 (78.57%), Postives = 138/154 (89.61%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYE+F+ DAE+AARLLDITLT RGAS GE I+MAGVPYHAV+QYLAKLV+LGESVAICEQIGDPNTSKGPVER+V RIVTPGTLTDSALLDDKRDNLLLAL   + TVG+AWL+LA+GRF   EI   +LA ELERLRP+E+L+A+
Sbjct:   16 LLFYRMGDFYEMFYDDAERAARLLDITLTTRGASAGEAIRMAGVPYHAVDQYLAKLVRLGESVAICEQIGDPNTSKGPVERQVTRIVTPGTLTDSALLDDKRDNLLLALHVHRATVGLAWLSLASGRFAVMEIVVADLANELERLRPSEILVAD 169
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A1F4E1H2_9PROT (DNA mismatch repair protein MutS n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4E1H2_9PROT)

HSP 1 Score: 240 bits (612), Expect = 8.100e-72
Identity = 123/154 (79.87%), Postives = 135/154 (87.66%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYE+FF DAE+AARLLDI LT RGAS GEPIKMAGVPYH+VEQYLAKLVKLGESVAICEQIGDP TSKGPVER+V RIVTPGTLTDSALLDDKRDNLL AL   + T G+AWL+LA+GRF A E    NLA ELERLRP+E+LIA+
Sbjct:   16 LLFYRMGDFYEMFFDDAERAARLLDIALTTRGASAGEPIKMAGVPYHSVEQYLAKLVKLGESVAICEQIGDPATSKGPVERRVTRIVTPGTLTDSALLDDKRDNLLAALQVNRATAGLAWLSLASGRFCAIETAPANLADELERLRPSEILIAD 169
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A7V7XM42_9RHOO (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7V7XM42_9RHOO)

HSP 1 Score: 226 bits (575), Expect = 1.750e-71
Identity = 117/152 (76.97%), Postives = 130/152 (85.53%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLI 456
            L+FYRMGDFYELF+ DAEKAARLLDITLT RG S G PI+MAGVP+HAVEQYLA+LV+LGESV ICEQIGDP TSKGPVER V RIVTPGTLTDSALLDDK D+LLLAL  ++N VG+AWL LA G FR  EI    LAA+LERLRPAE+L+
Sbjct:   16 LLFYRMGDFYELFYEDAEKAARLLDITLTTRGQSAGRPIRMAGVPFHAVEQYLARLVRLGESVVICEQIGDPATSKGPVERAVTRIVTPGTLTDSALLDDKSDSLLLALAPEKNLVGLAWLNLANGDFRLLEIGPGALAAQLERLRPAEILV 167
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A5C9BI94_9PROT (DNA mismatch repair protein MutS n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A5C9BI94_9PROT)

HSP 1 Score: 236 bits (602), Expect = 4.400e-71
Identity = 118/154 (76.62%), Postives = 136/154 (88.31%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYELF+ DAE+AARLLDITLT RGASNG+PIKMAGVPYHA EQYLA+L+KLGESVAICEQIGDP  SKGPVERKV+RIVTPGTLTDSALL++KRD+LLLAL Q +N +G+AWL LA+G+    EI A  L AELERL+P+E+L AE
Sbjct:   16 LLFYRMGDFYELFYEDAERAARLLDITLTQRGASNGQPIKMAGVPYHAAEQYLARLIKLGESVAICEQIGDPAASKGPVERKVVRIVTPGTLTDSALLEEKRDSLLLALHQNRNEIGLAWLNLASGQLTLAEISASQLPAELERLQPSEILFAE 169
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A7C2UHN4_9PROT (DNA mismatch repair protein MutS n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UHN4_9PROT)

HSP 1 Score: 238 bits (606), Expect = 6.280e-71
Identity = 119/154 (77.27%), Postives = 137/154 (88.96%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYE+F+ DAE+AARLLDITLT RGAS GEPI+MAGVPYH+VEQYLAKLVKLGESVAICEQIGDPN SKGPVERKV R+VTPGTLTDSALL++KRDN+LLAL  ++ T G+AWL+LA+GRF   E    NLA ELERLRP+E+LI+E
Sbjct:   16 LLFYRMGDFYEMFYDDAERAARLLDITLTTRGASAGEPIRMAGVPYHSVEQYLAKLVKLGESVAICEQIGDPNMSKGPVERKVTRVVTPGTLTDSALLEEKRDNVLLALNLQRATAGLAWLSLASGRFSVMETVTANLANELERLRPSEILISE 169
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BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A7Y8JCZ3_9RHOO (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8JCZ3_9RHOO)

HSP 1 Score: 226 bits (575), Expect = 2.060e-70
Identity = 115/154 (74.68%), Postives = 132/154 (85.71%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYELF+ DAEKAARLLDITLT RG S G PI MAGVPYHAVEQYLA+LV+LGESVAICEQIGDP  SKGPVER+V+RIVTPGTLTD+ALLDDK D+LLLAL Q++  +G+AWL LA+G  R TE  A  L A+L RL+PAE+L+AE
Sbjct:   15 LLFYRMGDFYELFYDDAEKAARLLDITLTRRGQSAGAPIPMAGVPYHAVEQYLARLVRLGESVAICEQIGDPAASKGPVERQVVRIVTPGTLTDAALLDDKSDSLLLALVQERQRIGLAWLNLASGALRLTETSAAALPAQLGRLKPAEILLAE 168
[Close]
BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Match: A0A7Y4W848_9PROT (DNA mismatch repair protein MutS n=2 Tax=Sideroxydans sp. TaxID=2067989 RepID=A0A7Y4W848_9PROT)

HSP 1 Score: 236 bits (601), Expect = 2.490e-70
Identity = 117/154 (75.97%), Postives = 136/154 (88.31%), Query Frame = 1 
Query:    1 LVFYRMGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAKLVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNLLLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE 462
            L+FYRMGDFYELF  DA + A+LLDITLT RGASNG+PIKMAGVPYHA EQYLA+LVK+GESVAICEQIGDP TSKGPVERKV+RIVTPGT+TDSALL++KRDNLLLAL Q+ N VG+AWL LA+G+F   E+ A  L AELERL+P+E+L+AE
Sbjct:   16 LLFYRMGDFYELFMDDAVRVAKLLDITLTQRGASNGQPIKMAGVPYHAAEQYLARLVKMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDSALLEEKRDNLLLALHQRNNEVGLAWLNLASGQFTLAEVAASQLPAELERLQPSEILVAE 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53562.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5N3W8_9PROT1.820e-7275.32DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A2M7J207_9PROT1.930e-7275.97DNA mismatch repair protein MutS (Fragment) n=2 Ta... [more]
A0A849T8W0_9PROT4.150e-7275.32DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A1F4DA17_9PROT7.700e-7278.57DNA mismatch repair protein MutS n=1 Tax=Betaprote... [more]
A0A1F4E1H2_9PROT8.100e-7279.87DNA mismatch repair protein MutS n=1 Tax=Betaprote... [more]
A0A7V7XM42_9RHOO1.750e-7176.97DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A5C9BI94_9PROT4.400e-7176.62DNA mismatch repair protein MutS n=1 Tax=Gallionel... [more]
A0A7C2UHN4_9PROT6.280e-7177.27DNA mismatch repair protein MutS n=1 Tax=Betaprote... [more]
A0A7Y8JCZ3_9RHOO2.060e-7074.68DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A7Y4W848_9PROT2.490e-7075.97DNA mismatch repair protein MutS n=2 Tax=Sideroxyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53562contigP-wetherbeei_contig53562:76..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog323848.Nmul_A0670
Preferred namemutS
PFAMsMutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
Model size462
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03555
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-66
EggNOG OGsCOG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,2VI3Z@28216|Betaproteobacteria,3729D@32003|Nitrosomonadales
Descriptionthat it carries out the mismatch recognition step. This protein has a weak ATPase activity
Cds size447
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.0103984-CDS-P-wetherbeei_contig53562:75..5221683186801.0103984-CDS-P-wetherbeei_contig53562:75..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53562 76..522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186801.023328-UTR-P-wetherbeei_contig53562:522..5371683186801.023328-UTR-P-wetherbeei_contig53562:522..537Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53562 523..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53562.1.1prot_P-wetherbeei_contig53562.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53562 76..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53562.1.1

>prot_P-wetherbeei_contig53562.1.1 ID=prot_P-wetherbeei_contig53562.1.1|Name=mRNA_P-wetherbeei_contig53562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MGDFYELFFGDAEKAARLLDITLTARGASNGEPIKMAGVPYHAVEQYLAK
LVKLGESVAICEQIGDPNTSKGPVERKVLRIVTPGTLTDSALLDDKRDNL
LLALWQKQNTVGIAWLALAAGRFRATEIKAVNLAAELERLRPAEVLIAE
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mRNA from alignment at P-wetherbeei_contig53562:76..537-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53562.1.1 ID=mRNA_P-wetherbeei_contig53562.1.1|Name=mRNA_P-wetherbeei_contig53562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig53562:76..537- (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGTTTTACCGTATGGGGGATTTCTATGAGTTATTTTTCGGCGATGC
GGAAAAAGCCGCTCGCCTGCTCGACATCACGCTCACTGCACGCGGTGCGT
CCAACGGCGAGCCGATCAAGATGGCGGGCGTGCCCTATCACGCCGTCGAG
CAATACCTCGCGAAGCTCGTCAAGCTCGGCGAATCGGTCGCCATCTGCGA
GCAGATCGGCGATCCGAATACCTCCAAAGGACCAGTCGAGCGCAAGGTGT
TGCGCATCGTCACGCCCGGCACGCTGACCGACTCGGCGCTGCTTGACGAC
AAGCGCGACAACCTGCTGCTGGCACTGTGGCAAAAACAGAACACCGTCGG
CATCGCGTGGCTGGCGCTGGCGGCAGGACGTTTTCGCGCAACCGAAATCA
AAGCGGTGAATCTGGCCGCCGAACTGGAGCGCCTGCGCCCGGCTGAAGTC
CTGATCGCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53562:76..537-

>mRNA_P-wetherbeei_contig53562.1.1 ID=mRNA_P-wetherbeei_contig53562.1.1|Name=mRNA_P-wetherbeei_contig53562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig53562:76..537- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGATTTCTATGAGTTATTTTTCGGCGATGCGGAAAAAGCCGCTCG
CCTGCTCGACATCACGCTCACTGCACGCGGTGCGTCCAACGGCGAGCCGA
TCAAGATGGCGGGCGTGCCCTATCACGCCGTCGAGCAATACCTCGCGAAG
CTCGTCAAGCTCGGCGAATCGGTCGCCATCTGCGAGCAGATCGGCGATCC
GAATACCTCCAAAGGACCAGTCGAGCGCAAGGTGTTGCGCATCGTCACGC
CCGGCACGCTGACCGACTCGGCGCTGCTTGACGACAAGCGCGACAACCTG
CTGCTGGCACTGTGGCAAAAACAGAACACCGTCGGCATCGCGTGGCTGGC
GCTGGCGGCAGGACGTTTTCGCGCAACCGAAATCAAAGCGGTGAATCTGG
CCGCCGAACTGGAGCGCCTGCGCCCGGCTGAAGTCCTGATCGCGGAG
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