mRNA_P-wetherbeei_contig53551.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53551.1.1
Unique NamemRNA_P-wetherbeei_contig53551.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A7C2UNA2_9PROT (MmgE/PrpD family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UNA2_9PROT)

HSP 1 Score: 233 bits (593), Expect = 1.280e-71
Identity = 107/175 (61.14%), Postives = 135/175 (77.14%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDG 525
            ++CAE A RG++GPS++LEGR GFF THA   VKW RLF+ LG  +EI  VY KPYPCCRHYH+ +DGI+EL+    F A+DV    +G+YAVGV+GHD++HCD+LLDAQMSAP AAALA+V G V+A  F+PE+L R  V+AL++R D  IDDECERIYPG RSG+  I L +G
Sbjct:  242 LLCAELAARGVSGPSRILEGRNGFFHTHAGDEVKWGRLFEALGARFEIENVYFKPYPCCRHYHSAVDGIRELRERHGFRAEDVERVCIGLYAVGVHGHDHRHCDTLLDAQMSAPCAAALALVDGKVSASQFLPESLCRPAVQALLQRIDTEIDDECERIYPGRRSGAVHIVLHNG 416          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A225MGV6_9BURK (2-methylcitrate dehydratase n=2 Tax=Candidimonas nitroreducens TaxID=683354 RepID=A0A225MGV6_9BURK)

HSP 1 Score: 211 bits (537), Expect = 1.700e-63
Identity = 99/174 (56.90%), Postives = 126/174 (72.41%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRD 522
            I+CAE AKRGI+GPS+VLEG  GFF       ++  RL   LG  Y +  +Y KPYPCCRHYHA IDGI++L+ E  F A DV   D+G+Y+VG  GHD++HCD+LL+AQMSAP AAA+AI+ GDV APMF+P+ L R ++  L+ R    +DDECERIYP IRSG+A + LRD
Sbjct:  222 IVCAELAKRGISGPSRVLEGSLGFFNVIGNGDIRPDRLLGDLGAAYAVADIYFKPYPCCRHYHAAIDGIRQLRAEHAFAAADVERVDIGLYSVGAMGHDHRHCDTLLEAQMSAPCAAAMAILDGDVAAPMFMPDKLARPELATLMLRIHTNVDDECERIYPRIRSGAATVVLRD 395          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A1F4DT49_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DT49_9PROT)

HSP 1 Score: 201 bits (511), Expect = 1.370e-59
Identity = 97/179 (54.19%), Postives = 123/179 (68.72%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLLE 537
            I CAEFA+RG+TGP KVLEGR G F   A   V W  L  GLG+ +EI  VY KPYP CRH+HA +D ++EL+       DD+   D+GMY VGV GHD++H  +LLDAQMSAPV+ ALA+V GDVTA  +    L+R +VR LI+  +  ID EC+RIYPG R G A++ L++GT LE
Sbjct:  225 ITCAEFARRGLTGPHKVLEGRNGLFQVTADGVVDWDCLLGGLGERFEITNVYFKPYPACRHFHAALDAVRELRNREGVRLDDIAKVDVGMYEVGVRGHDHRHAYNLLDAQMSAPVSTALALVYGDVTATTYDRANLERAEVRRLIDATNVYIDPECDRIYPGRRGGVARLTLKNGTTLE 403          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A0S8C4P0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C4P0_9PROT)

HSP 1 Score: 182 bits (461), Expect = 3.510e-52
Identity = 86/179 (48.04%), Postives = 119/179 (66.48%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLLE 537
            I+CAE A RG++GPS VLEGRYGF    +  +    R+  GLG  +EI   Y KPYP CRH+H+ +D I+ + + R F   +V   ++G+Y VG+ GHD+KH  SLLDAQMSAPV+AALA+VLGDVTA  +    ++  +V+ +       +D ECER+YP  RSG A+++ RDG+ LE
Sbjct:  224 IVCAELALRGLSGPSTVLEGRYGFAGAVSGGNADLGRITAGLGSTFEICNAYFKPYPACRHFHSALDAIRIISKRRSFAPQEVESVEIGLYDVGLQGHDHKHAYSLLDAQMSAPVSAALAVVLGDVTAASYDRANIESPEVKRISNATTVVVDPECERLYPRRRSGVARVQFRDGSQLE 402          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A7X1PA81_9PROT (MmgE/PrpD family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1PA81_9PROT)

HSP 1 Score: 171 bits (433), Expect = 4.870e-48
Identity = 83/178 (46.63%), Postives = 109/178 (61.24%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLL 534
            I+CAE  KRGITGP  VLEG++GFF       V W RL  GLG  YEI   Y KPYPCCRH H ++DGI  L+ +       V   + G YAVG   H++   ++LLDAQMS P AAALA++  DVT+P F P  +DR DV+ +I +     D++ +R+YP  R G   + ++DGT L
Sbjct:  226 ILCAELGKRGITGPMHVLEGKHGFFKAFVDGQVNWERLMQGLGMRYEIEDAYFKPYPCCRHLHPIMDGIVTLKHKHHVNPSQVERIEAGSYAVGAR-HNHTSWEALLDAQMSMPCAAALALIEDDVTSPSFKPGRIDRPDVQGMIRKVKVYTDEDTDRLYPKRRGGVVTLVMKDGTRL 402          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A3N5NET6_9PROT (MmgE/PrpD family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NET6_9PROT)

HSP 1 Score: 167 bits (423), Expect = 1.440e-46
Identity = 81/178 (45.51%), Postives = 111/178 (62.36%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLL 534
            ++CAE  KR ITGPS VLEG++GFF      +V W RLF  LG  YEI   Y KPYPCCRH H ++DGI  L+++       V   + G Y+VG   H++   ++LLDAQMS P AAALA++  DVT+P F P  +DR +V+A+I++     D E +R+YP  R G   + ++DG  L
Sbjct:  226 VLCAELGKRRITGPSHVLEGKHGFFKAFVDNNVNWERLFQDLGSRYEIEDAYFKPYPCCRHLHPIMDGIVTLKKKHHVNPAQVERIEAGSYSVGAR-HNHTSWEALLDAQMSMPCAAALALIEDDVTSPSFKPGRIDRPEVQAMIQKVKVYTDAETDRVYPKRRGGVVTLVMKDGARL 402          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A1X7MWI5_9RHOB (2-methylcitrate dehydratase PrpD n=1 Tax=Maritimibacter sp. HL-12 TaxID=1162418 RepID=A0A1X7MWI5_9RHOB)

HSP 1 Score: 159 bits (401), Expect = 2.280e-43
Identity = 84/179 (46.93%), Postives = 105/179 (58.66%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLLE 537
            I CA  A +G+TGP +V EGR+G F    A       L      G  I   Y K YPCCRHYHA IDG+ +L+ + R    DV    LG+Y V V GHD+K   ++L AQMSAP+AA LA+V G VT P F PETL+R ++ A+I R +  +D  CE  YPG RS   +I L DG  LE
Sbjct:  215 IACAALAAQGLTGPREVFEGRHGVFNAFIAGAGDPGALDT---PGIAIETAYFKLYPCCRHYHAAIDGLLDLRAQIRDPMRDVAEVRLGLYGVAVRGHDHKQAATMLSAQMSAPIAAGLALVDGGVTVPGFAPETLERPELTAMINRVETAVDATCEEEYPGCRSAHVEIALTDGRRLE 390          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A1Y3PSQ8_9BACI (Uncharacterized protein n=1 Tax=Bacillus thermozeamaize TaxID=230954 RepID=A0A1Y3PSQ8_9BACI)

HSP 1 Score: 155 bits (392), Expect = 4.980e-42
Identity = 76/178 (42.70%), Postives = 108/178 (60.67%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLL 534
            ++CAE AKR ITGP  VLEG+ GF    A  ++   RLF G+G+ +EI  +Y KPYPCCRH HAVID +K L+       D +   D+G+Y VG   H++  C+ LLDAQMS P A ALAI   +VT   ++     +  V AL+++    +DDECE +YP  R     I++++G ++
Sbjct:  214 VLCAELAKRNITGPRHVLEGKNGFVRAFADGYINCERLFSGIGERFEIMEIYFKPYPCCRHLHAVIDAVKVLKARHLLDIDQIEAIDVGIYQVGQK-HNHVQCEHLLDAQMSIPCAVALAITQDEVTLNSYLSGAYRQARVAALMQKVFVMVDDECEALYPRKRPARVTIRMKNGEVM 390          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A1F4DRP6_9PROT (MmgE_PrpD domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DRP6_9PROT)

HSP 1 Score: 151 bits (382), Expect = 8.190e-42
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGV 285
            ++CAEFA+RG+TGPSKVLEGRYGFF THA   VKW RLF GLG+ +EI+ VY KPYPCCRHYHAV+DGI  L+ + RF A+DV  ADLG+YAVGV
Sbjct:  225 LLCAEFARRGVTGPSKVLEGRYGFFRTHAGGQVKWERLFYGLGERFEISDVYFKPYPCCRHYHAVVDGILTLREQHRFRAEDVTQADLGIYAVGV 319          
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Match: A0A4R2C5A4_SHIGR (2-methylcitrate dehydratase PrpD n=1 Tax=Shinella granuli TaxID=323621 RepID=A0A4R2C5A4_SHIGR)

HSP 1 Score: 149 bits (376), Expect = 1.170e-39
Identity = 75/179 (41.90%), Postives = 101/179 (56.42%), Query Frame = 1
Query:    1 IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINIVYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDYKHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDARIDDECERIYPGIRSGSAKIKLRDGTLLE 537
            I+CAE A  GITG  + LEG  G F       V    L   LGQ + I   Y KPYPCCRH+HA ID    L+ E R   D +   D+G+Y VGV+GHD++  ++LL+AQMSAP A   A++ G + A  F P +    + + L+      +D+ CE IYP +RSG   ++L DG  LE
Sbjct:  226 IVCAELAAAGITGAIECLEGADGLFRAMVDGRVDRRSLLADLGQSFLITEAYFKPYPCCRHFHAAIDATLALRDEERLEPDQITAIDIGLYQVGVHGHDHRTANNLLEAQMSAPCAVVGALIQGRLNAAEFEPSSFAGAEPQRLLNVTRVHVDERCEEIYPKVRSGVVTLELTDGRRLE 404          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53551.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2UNA2_9PROT1.280e-7161.14MmgE/PrpD family protein n=1 Tax=Betaproteobacteri... [more]
A0A225MGV6_9BURK1.700e-6356.902-methylcitrate dehydratase n=2 Tax=Candidimonas n... [more]
A0A1F4DT49_9PROT1.370e-5954.19Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8C4P0_9PROT3.510e-5248.04Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7X1PA81_9PROT4.870e-4846.63MmgE/PrpD family protein n=1 Tax=Betaproteobacteri... [more]
A0A3N5NET6_9PROT1.440e-4645.51MmgE/PrpD family protein n=1 Tax=Betaproteobacteri... [more]
A0A1X7MWI5_9RHOB2.280e-4346.932-methylcitrate dehydratase PrpD n=1 Tax=Maritimib... [more]
A0A1Y3PSQ8_9BACI4.980e-4242.70Uncharacterized protein n=1 Tax=Bacillus thermozea... [more]
A0A1F4DRP6_9PROT8.190e-4270.53MmgE_PrpD domain-containing protein (Fragment) n=1... [more]
A0A4R2C5A4_SHIGR1.170e-3941.902-methylcitrate dehydratase PrpD n=1 Tax=Shinella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53551contigP-wetherbeei_contig53551:1..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1034347.CAHJ01000012_gene2394
PFAMsMmgE_PrpD
Model size537
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.6e-31
EggNOG OGsCOG2079@1|root,COG2079@2|Bacteria,1TSD7@1239|Firmicutes,4HEZJ@91061|Bacilli,1ZDXE@1386|Bacillus
Descriptionprotein involved in propionate catabolism
Cds size537
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.9660423-CDS-P-wetherbeei_contig53551:0..5371683186800.9660423-CDS-P-wetherbeei_contig53551:0..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53551 1..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53551.1.1prot_P-wetherbeei_contig53551.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53551 1..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53551.1.1

>prot_P-wetherbeei_contig53551.1.1 ID=prot_P-wetherbeei_contig53551.1.1|Name=mRNA_P-wetherbeei_contig53551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
IICAEFAKRGITGPSKVLEGRYGFFATHAAPHVKWARLFDGLGQGYEINI
VYHKPYPCCRHYHAVIDGIKELQRERRFTADDVVHADLGMYAVGVNGHDY
KHCDSLLDAQMSAPVAAALAIVLGDVTAPMFVPETLDRKDVRALIERCDA
RIDDECERIYPGIRSGSAKIKLRDGTLLE
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mRNA from alignment at P-wetherbeei_contig53551:1..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53551.1.1 ID=mRNA_P-wetherbeei_contig53551.1.1|Name=mRNA_P-wetherbeei_contig53551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53551:1..537- (Phaeothamnion wetherbeei SAG_119_79)
ATCATCTGCGCCGAATTTGCCAAGCGCGGTATTACGGGCCCTAGCAAGGT GCTGGAAGGTCGCTATGGATTCTTCGCGACGCATGCGGCGCCACATGTGA AATGGGCGCGGCTGTTTGATGGCCTCGGGCAGGGATATGAAATCAACATC GTTTACCACAAGCCGTATCCGTGCTGCCGGCATTACCACGCCGTAATCGA CGGCATCAAGGAGTTGCAGCGCGAACGGCGCTTTACGGCGGACGATGTCG TGCACGCCGATCTTGGTATGTACGCGGTTGGCGTAAACGGACATGATTAC AAGCACTGCGACAGCCTGCTCGATGCGCAGATGAGCGCGCCGGTCGCGGC CGCGCTGGCGATAGTTCTCGGTGACGTTACGGCACCGATGTTCGTGCCGG AGACGCTTGACCGCAAAGACGTGCGTGCACTGATCGAACGCTGTGATGCC CGTATCGATGATGAATGCGAGCGCATCTATCCCGGCATACGCTCGGGTTC GGCGAAGATCAAATTGCGCGACGGCACGTTGCTGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53551:1..537-

>mRNA_P-wetherbeei_contig53551.1.1 ID=mRNA_P-wetherbeei_contig53551.1.1|Name=mRNA_P-wetherbeei_contig53551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53551:1..537- (Phaeothamnion wetherbeei SAG_119_79)
ATCATCTGCGCCGAATTTGCCAAGCGCGGTATTACGGGCCCTAGCAAGGT
GCTGGAAGGTCGCTATGGATTCTTCGCGACGCATGCGGCGCCACATGTGA
AATGGGCGCGGCTGTTTGATGGCCTCGGGCAGGGATATGAAATCAACATC
GTTTACCACAAGCCGTATCCGTGCTGCCGGCATTACCACGCCGTAATCGA
CGGCATCAAGGAGTTGCAGCGCGAACGGCGCTTTACGGCGGACGATGTCG
TGCACGCCGATCTTGGTATGTACGCGGTTGGCGTAAACGGACATGATTAC
AAGCACTGCGACAGCCTGCTCGATGCGCAGATGAGCGCGCCGGTCGCGGC
CGCGCTGGCGATAGTTCTCGGTGACGTTACGGCACCGATGTTCGTGCCGG
AGACGCTTGACCGCAAAGACGTGCGTGCACTGATCGAACGCTGTGATGCC
CGTATCGATGATGAATGCGAGCGCATCTATCCCGGCATACGCTCGGGTTC
GGCGAAGATCAAATTGCGCGACGGCACGTTGCTGGAA
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