mRNA_P-wetherbeei_contig124.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig124.5.1
Unique NamemRNA_P-wetherbeei_contig124.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig124.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig124contigP-wetherbeei_contig124:12655..13798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size869
Hectar predicted targeting categoryother localisation
Exons2
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.7120426-UTR-P-wetherbeei_contig124:12654..130731683185947.7120426-UTR-P-wetherbeei_contig124:12654..13073Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig124 12655..13073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.7247028-CDS-P-wetherbeei_contig124:13073..133241683185947.7247028-CDS-P-wetherbeei_contig124:13073..13324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig124 13074..13324 +
1683185947.733153-CDS-P-wetherbeei_contig124:13599..137981683185947.733153-CDS-P-wetherbeei_contig124:13599..13798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig124 13600..13798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig124.5.1prot_P-wetherbeei_contig124.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig124 13074..13798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig124.5.1

>prot_P-wetherbeei_contig124.5.1 ID=prot_P-wetherbeei_contig124.5.1|Name=mRNA_P-wetherbeei_contig124.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MTLPSSFFPVAFFGTPADSSCRYRRRHRRTGLHCGRRRRWRWLPPPSGAN
ASTAAALTAKPAVRCPTGAVHHRGRLSGCAFRARRSSRTGFPRGGSATAV
RPPASGTCGGARAVAWRILLQTARPTLLAAAAVFPVAQFGQGEHGGRCF*
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mRNA from alignment at P-wetherbeei_contig124:12655..13798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig124.5.1 ID=mRNA_P-wetherbeei_contig124.5.1|Name=mRNA_P-wetherbeei_contig124.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1144bp|location=Sequence derived from alignment at P-wetherbeei_contig124:12655..13798+ (Phaeothamnion wetherbeei SAG_119_79)
TATGCTGTGCTTGGAGATAGACATCCGTATACGGAGAGGGAAAGGGACGT
GCGAAAGGGCGACCAACGAATAGGGAATAGGCATCGAAGGGGAGCTCTGC
AGCCAAATCCTTTCTCTCCTTCACGCAACCTTTGTTGCGACGACGGTAGG
TCGACGGGATATGACGAGTGAGCCGTTCTTCGCCTCAAAGCAATACTTTC
TAGGTGGGTCAACGCGCTCACTTTGCAGCGTTCCTTTATTCAACATAAAT
AAAAAGGTGGTTTCTTCTTGGAGACGAGTGTGGTAGAAGGGACAGAGATG
AAGAAAATGGACTATGTCGCCCTTTTTTGCGCCATGGTACCCGTTCGACG
CTGCCGTAATCACTAACTCGCGTTAGCCGCAACAAGTTGGCTAGGTTTAC
TCCTGAGACTCCTTCCTTCATGACACTTCCTTCTTCCTTCTTTCCCGTCG
CTTTCTTTGGCACCCCGGCCGACTCATCGTGTCGGTACAGAAGACGGCAC
CGGCGGACCGGCCTGCATTGCGGCAGGAGGCGGCGGTGGCGGTGGCTGCC
GCCGCCATCGGGTGCCAATGCGAGCACAGCGGCGGCTCTCACGGCAAAAC
CGGCCGTAAGGTGTCCAACCGGAGCTGTTCACCATCGCGGCCGTCTCTCC
GGTTGCGCATTTCGGGCGAGGTGAGCACGGTGGGAGATATTTCTGGTTTT
GAGCTTACCATCGCGGATTAAAGGAGGGAGGCGGTTCCGGGCGCCCGCAG
CACCGCGGTTCTGGTTCGTTGGCCTCCCCTATGCATCTCTTTTGAAAGGT
TTTGGTCAAGCCAGCCCCGAGAGAAGCTTACTTCCCCCTCCTCTAACCTT
TTTGCTCCTACGACTTCCTTCCTTCCGCTTCCTTGTTCCTTCTTTTTGTT
GTTTGGTCTGGGATTCTCGACCGGCTCGCCGTACTGGGAGAGAAGACGGA
GCTCGCGAACCGGCTTCCCTCGCGGTGGATCGGCAACGGCGGTGCGGCCG
CCGGCGTCAGGCACCTGCGGCGGCGCAAGGGCCGTCGCGTGGCGTATCCT
GCTTCAGACGGCCCGGCCGACACTACTCGCCGCCGCTGCCGTCTTTCCAG
TCGCACAGTTCGGGCAGGGCGAGCACGGTGGGAGATGTTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig124:12655..13798+

>mRNA_P-wetherbeei_contig124.5.1 ID=mRNA_P-wetherbeei_contig124.5.1|Name=mRNA_P-wetherbeei_contig124.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig124:12655..13798+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACACTTCCTTCTTCCTTCTTTCCCGTCGCTTTCTTTGGCACCCCGGC
CGACTCATCGTGTCGGTACAGAAGACGGCACCGGCGGACCGGCCTGCATT
GCGGCAGGAGGCGGCGGTGGCGGTGGCTGCCGCCGCCATCGGGTGCCAAT
GCGAGCACAGCGGCGGCTCTCACGGCAAAACCGGCCGTAAGGTGTCCAAC
CGGAGCTGTTCACCATCGCGGCCGTCTCTCCGGTTGCGCATTTCGGGCGA
GACGGAGCTCGCGAACCGGCTTCCCTCGCGGTGGATCGGCAACGGCGGTG
CGGCCGCCGGCGTCAGGCACCTGCGGCGGCGCAAGGGCCGTCGCGTGGCG
TATCCTGCTTCAGACGGCCCGGCCGACACTACTCGCCGCCGCTGCCGTCT
TTCCAGTCGCACAGTTCGGGCAGGGCGAGCACGGTGGGAGATGTTTCTGA
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