mRNA_P-wetherbeei_contig5351.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5351.1.1
Unique NamemRNA_P-wetherbeei_contig5351.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: UPI0009E56063 (la-related protein 1B-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E56063)

HSP 1 Score: 78.6 bits (192), Expect = 1.890e-15
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   10 RSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            R+L  +Q+EYYFSA+NLCKDL+LR KMD+NG+VP+ +I  FNRI+ +T S   + +A+ PS  LE
Sbjct:  319 RTLILKQIEYYFSADNLCKDLFLRSKMDSNGWVPINLIATFNRIKQLTDSTPFILDAIRPSNVLE 383          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A2K1JW63_PHYPA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JW63_PHYPA)

HSP 1 Score: 77.4 bits (189), Expect = 5.360e-15
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    4 PSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            P R++  +Q+EYYFS +NLCKD++LR KMD+NGF+P+ +I +FNR+R +T  +  + +AL  S  +E
Sbjct:  401 PLRTMLVKQIEYYFSMDNLCKDIFLRSKMDSNGFIPISIIASFNRVRQLTEDSALILDALQDSSLIE 467          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A1Y1I697_KLENI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I697_KLENI)

HSP 1 Score: 74.7 bits (182), Expect = 4.770e-14
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   10 RSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLEL 207
            R L  +Q+EYYFS ENLC+D++LR KMD  G++PL VI  FNR+R +T     + EAL  S  +EL
Sbjct:  650 RQLIIQQIEYYFSIENLCRDIFLRSKMDEEGYIPLTVIAGFNRVRMLTADPAMILEALKDSPAVEL 715          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A388LTI4_CHABU (HTH La-type RNA-binding domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LTI4_CHABU)

HSP 1 Score: 74.7 bits (182), Expect = 4.780e-14
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 LPSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            LP R+   +Q+EYYFS ENLC+D+YLR +MD  GF+P+ VI AFNR++ +T     + EAL  S  +E
Sbjct:  709 LPLRARISKQIEYYFSIENLCRDIYLRQQMDEQGFIPVSVIAAFNRVKMLTVDVSVILEALADSSVVE 776          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A7S1X436_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X436_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 6.400e-14
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   25 RQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            +Q+EYYFS ENLCKD++LR KMD +GF+PL VI +FNR+R +T   + + EAL  S+ +E
Sbjct:  468 KQIEYYFSVENLCKDIFLRSKMDEDGFIPLAVIASFNRVRMLTPDPLIIVEALEDSETVE 527          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A7I4EAB6_PHYPA (HTH La-type RNA-binding domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4EAB6_PHYPA)

HSP 1 Score: 73.9 bits (180), Expect = 8.870e-14
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 PSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            P R++  +Q+EYYFS +NLCKD++LR KMD++GF+P+ VI  FNR+R +T  A  + +AL  S  +E
Sbjct:  408 PLRAMLVKQIEYYFSMDNLCKDIFLRSKMDSDGFIPINVIANFNRVRQLTEDASLILDALQNSSLVE 474          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A2I0X899_9ASPA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X899_9ASPA)

HSP 1 Score: 73.2 bits (178), Expect = 1.550e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   10 RSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            R+L  +Q+EYYFS+ENLC DL+LR  MD NG+VP+ +I  FNRI+ +T S   + +A+ PS  LE
Sbjct:  318 RTLILKQIEYYFSSENLCSDLFLRSNMDNNGWVPIDLIAKFNRIKLLTDSIPFILDAIRPSDVLE 382          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: UPI001C4A94FF (la-related protein 1B-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4A94FF)

HSP 1 Score: 72.4 bits (176), Expect = 3.000e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   25 RQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLEL 207
            RQ+EYYFS +NLCKD++LRGKMD  G+VP+ +I  FN ++ VT S   + +AL  S KLE+
Sbjct:  328 RQIEYYFSVDNLCKDIFLRGKMDDQGWVPVSLIATFNMVKRVTTSTREILDALRDSTKLEI 388          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: A0A7S0IEJ5_MICPS (Hypothetical protein n=4 Tax=Micromonas TaxID=38832 RepID=A0A7S0IEJ5_MICPS)

HSP 1 Score: 72.4 bits (176), Expect = 3.050e-13
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   25 RQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            +QVEYYFS ENLCKDL+LR +MDA G++PLPVI  FNRIR +T     + EA+  S  +E
Sbjct:  101 QQVEYYFSVENLCKDLFLRQRMDAEGWIPLPVIAGFNRIRMMTPEPSVVLEAIQGSAVVE 160          
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Match: C1N9K3_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N9K3_MICPC)

HSP 1 Score: 66.2 bits (160), Expect = 1.460e-12
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   28 QVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAVTCSAVTLYEALLPSQKLE 204
            QVEYYFS ENLCKD++LR +MD  G++P+P I  FNRIR +T     + EA+  S  +E
Sbjct:   39 QVEYYFSVENLCKDVFLRERMDDEGYIPMPFIANFNRIRMMTPEPSVVLEAISGSAAVE 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009E560631.890e-1555.38la-related protein 1B-like n=1 Tax=Phalaenopsis eq... [more]
A0A2K1JW63_PHYPA5.360e-1547.76HTH La-type RNA-binding domain-containing protein ... [more]
A0A1Y1I697_KLENI4.770e-1451.52HTH La-type RNA-binding domain-containing protein ... [more]
A0A388LTI4_CHABU4.780e-1450.00HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1X436_9CHLO6.400e-1455.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7I4EAB6_PHYPA8.870e-1449.25HTH La-type RNA-binding domain-containing protein ... [more]
A0A2I0X899_9ASPA1.550e-1352.31HTH La-type RNA-binding domain-containing protein ... [more]
UPI001C4A94FF3.000e-1354.10la-related protein 1B-like n=2 Tax=Zingiber offici... [more]
A0A7S0IEJ5_MICPS3.050e-1358.33Hypothetical protein n=4 Tax=Micromonas TaxID=3883... [more]
C1N9K3_MICPC1.460e-1252.54Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5351contigP-wetherbeei_contig5351:3685..3891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3218.PP1S138_131V6.1
PFAMsLa
Model size207
Max annot lvl35493|Streptophyta
KEGG koko:K18757
Hectar predicted targeting categoryother localisation
GOsGO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010286,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1990904
Exons1
Evalue8.79e-16
EggNOG OGsCOG5193@1|root,KOG2590@2759|Eukaryota,37RTS@33090|Viridiplantae,3GH1Q@35493|Streptophyta
DescriptionLa-related protein
Cds size207
COG categoryJO
BRITEko00000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.355671-CDS-P-wetherbeei_contig5351:3684..38911683186800.355671-CDS-P-wetherbeei_contig5351:3684..3891Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5351 3685..3891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5351.1.1prot_P-wetherbeei_contig5351.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5351 3685..3891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5351.1.1

>prot_P-wetherbeei_contig5351.1.1 ID=prot_P-wetherbeei_contig5351.1.1|Name=mRNA_P-wetherbeei_contig5351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
LPSRSLCFRQVEYYFSAENLCKDLYLRGKMDANGFVPLPVIMAFNRIRAV
TCSAVTLYEALLPSQKLEL
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mRNA from alignment at P-wetherbeei_contig5351:3685..3891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5351.1.1 ID=mRNA_P-wetherbeei_contig5351.1.1|Name=mRNA_P-wetherbeei_contig5351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5351:3685..3891- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGTCTCGCTCCCTCTGTTTTCGGCAGGTGGAGTACTACTTCAGCGC GGAGAACCTGTGCAAGGACCTCTACCTGCGGGGCAAGATGGACGCCAATG GCTTCGTGCCGCTGCCCGTCATCATGGCCTTCAACCGCATCCGCGCCGTC ACCTGCAGCGCCGTCACGCTCTACGAGGCGCTGCTGCCGTCGCAGAAGCT TGAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5351:3685..3891-

>mRNA_P-wetherbeei_contig5351.1.1 ID=mRNA_P-wetherbeei_contig5351.1.1|Name=mRNA_P-wetherbeei_contig5351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5351:3685..3891- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGTCTCGCTCCCTCTGTTTTCGGCAGGTGGAGTACTACTTCAGCGC
GGAGAACCTGTGCAAGGACCTCTACCTGCGGGGCAAGATGGACGCCAATG
GCTTCGTGCCGCTGCCCGTCATCATGGCCTTCAACCGCATCCGCGCCGTC
ACCTGCAGCGCCGTCACGCTCTACGAGGCGCTGCTGCCGTCGCAGAAGCT
TGAGCTG
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