mRNA_P-wetherbeei_contig53487.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53487.1.1
Unique NamemRNA_P-wetherbeei_contig53487.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: A0A6L5FFZ1_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FFZ1_9HYPH)

HSP 1 Score: 112 bits (279), Expect = 1.160e-27
Identity = 52/99 (52.53%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    7 IGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            +G +WD FR +L+ +RR G A++R E+DP R+G+ AP+F+   ++LGSLSF L  +RTD+ LI +LAPL +AGARE+ER M ++ A+ + SPAR+RVAR
Sbjct:  232 LGNTWDEFRQRLSTLRRDGAAVARGELDPGRVGIAAPIFE-GHSILGSLSFLLPAERTDDTLIGRLAPLTIAGAREIERAMSQQAAAATASPARVRVAR 329          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: A0A6N7H142_9HYPH (HTH domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H142_9HYPH)

HSP 1 Score: 108 bits (270), Expect = 3.940e-26
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            A +G+++D FR  LA +RR G  ++  E+DP R+G+ AP+FD+D AVLGSLS AL   R D+ALI++L PL  AGAREVER+M     +   SPAR+++AR
Sbjct:  261 AGLGKNFDDFRNALATLRRAGVCVTHGEVDPGRVGISAPIFDRDHAVLGSLSLALPSARVDDALIERLKPLTAAGAREVERIMSNGSDTSQPSPARVKIAR 361          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: A0A327KG49_9HYPH (IclR-ED domain-containing protein n=2 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327KG49_9HYPH)

HSP 1 Score: 88.6 bits (218), Expect = 6.920e-19
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            A +G SWD FR  LA  RR G+  +  ++D  R  + APVF   RAVLGSLSF +   R DE+L  +LAPL++A AR++E  M  + A    S  R+RVAR
Sbjct:  211 AGLGHSWDDFRRHLAAFRRAGYTTAAGDVDQVRAAIAAPVFGPRRAVLGSLSFLVPKARWDESLRARLAPLVIAAARDIETAMQADDADGQASRPRVRVAR 311          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: J6J4W9_9RHOB (Transcriptional regulator, IclR family n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J6J4W9_9RHOB)

HSP 1 Score: 86.3 bits (212), Expect = 2.330e-18
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            A++G  WD FR  LA IRR G A +  +++PNR+G+ AP+FD+ RA+LGSL+F +     D+AL  +L  L+  GARE++  M         S  R+RV R
Sbjct:  156 ADLGRDWDEFRRLLAAIRRAGVASTAGDLNPNRVGVAAPIFDQRRAILGSLNFVVPQQNFDDALRVRLTGLVTVGAREIQAGMLAAAEESGASRPRVRVPR 256          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: UPI001834CDF4 (IclR family transcriptional regulator n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI001834CDF4)

HSP 1 Score: 86.7 bits (213), Expect = 2.630e-18
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            A +G+SWD FR  LA  RR G+A +  ++D  R  + APVF + RAVLGS+SF +   R DEAL  +LAP ++A AR++E  M    +    S  R+RVAR
Sbjct:  186 AGLGQSWDDFRRHLAAFRRAGYAAASGDVDQVRAAIAAPVFGQRRAVLGSISFLVPKARYDEALRARLAPNVIAAARDIETAMQAGSSEGQASRPRVRVAR 286          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: A0A327KIA0_9HYPH (IclR-ED domain-containing protein n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327KIA0_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 4.790e-18
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            A +G+SWD FR  LA IRR G+A +  ++D  R  + APVF   RAVLGSLSF +   R D+AL  +LAPL+M  A  +E  M         S  R+RV R
Sbjct:  206 AGLGQSWDGFRRSLAAIRRSGYAAASGDVDTVRAAIAAPVFGPRRAVLGSLSFLVPRGRYDDALRNRLAPLVMTAASAIEAAMQNTATDVPASRPRVRVGR 306          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: A0A327L4Q5_9HYPH (IclR-ED domain-containing protein n=2 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327L4Q5_9HYPH)

HSP 1 Score: 84.7 bits (208), Expect = 1.910e-17
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVAR 303
            A +G+SW+ FR  LA  RR G+A +  ++D  R  + APVF   RAV+GSLSF +   R DE L  +LAPL++A AR +E  M  +      S  R+RV+R
Sbjct:  211 AGLGQSWEDFRRHLAAFRRAGYAAASGDVDQVRAAVAAPVFGARRAVIGSLSFLVPKPRYDEVLRARLAPLVIASARNIEAAMQADDTEGQASRPRVRVSR 311          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: UPI00200AADDF (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas sp. NAR14 TaxID=2937791 RepID=UPI00200AADDF)

HSP 1 Score: 80.1 bits (196), Expect = 4.600e-16
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEE 258
            A +GE WD FR  L E+RR+G+ I+  EIDP RIG+ AP+ +  + +LGSLS+ +     D A   +L PL+MA AREVE  + E+
Sbjct:  166 AGLGEGWDEFRKALTEMRRRGYVITYWEIDPERIGIAAPLLEDQKRLLGSLSYVIPKSEQDTA--PRLGPLLMAAAREVEVRLAED 249          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: UPI001ADBFF59 (IclR family transcriptional regulator n=1 Tax=Aquabacter sp. L1I39 TaxID=2820278 RepID=UPI001ADBFF59)

HSP 1 Score: 73.6 bits (179), Expect = 1.840e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTD----EALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLR 294
            A +GE+W+ FR  ++ +RR G  I++ E+ PN +G+GAPVFD +R +LGS+ FA+   R D    EAL+ ++  L       +       PA ++  P ++R
Sbjct:  161 AGLGENWEQFRANMSRLRRDGHCITQSEVIPNLVGIGAPVFDAERRILGSVVFAVPLARFDAADKEALVNEIKQLAARITSAIAGEAGARPAQRAARPRKIR 262          
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Match: UPI001932BDF7 (helix-turn-helix domain-containing protein n=1 Tax=Xanthobacter dioxanivorans TaxID=2528964 RepID=UPI001932BDF7)

HSP 1 Score: 73.6 bits (179), Expect = 1.940e-13
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGSLSFALSYDRTDEALIQKLAPLIMAGAREVER 243
            A +G++WD FR+++A +R+ G+ ++R E+ P  +G+GAPVFD D  +LGS+ FA+S  R D +L Q     I+  A  + R
Sbjct:  162 AGLGDTWDQFRSRMARLRKDGYCVTRAEVVPGLVGIGAPVFDADDRILGSVVFAVSEARFDASLTQGFVTEIVDLASRITR 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FFZ1_9HYPH1.160e-2752.53Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A6N7H142_9HYPH3.940e-2651.49HTH domain-containing protein n=1 Tax=Hyphomicrobi... [more]
A0A327KG49_9HYPH6.920e-1946.53IclR-ED domain-containing protein n=2 Tax=Rhodopla... [more]
J6J4W9_9RHOB2.330e-1842.57Transcriptional regulator, IclR family n=1 Tax=Rho... [more]
UPI001834CDF42.630e-1845.54IclR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A327KIA0_9HYPH4.790e-1845.54IclR-ED domain-containing protein n=2 Tax=Rhodopla... [more]
A0A327L4Q5_9HYPH1.910e-1743.56IclR-ED domain-containing protein n=2 Tax=Rhodopla... [more]
UPI00200AADDF4.600e-1646.51helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001ADBFF591.840e-1335.29IclR family transcriptional regulator n=1 Tax=Aqua... [more]
UPI001932BDF71.940e-1340.74helix-turn-helix domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53487contigP-wetherbeei_contig53487:13..324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1187851.A33M_3073
PFAMsHTH_IclR,IclR
Model size312
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.82e-19
EggNOG OGsCOG1414@1|root,COG1414@2|Bacteria,1RDS5@1224|Proteobacteria,2TVQ4@28211|Alphaproteobacteria
Descriptiontranscriptional regulator
Cds size312
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.9495034-CDS-P-wetherbeei_contig53487:12..3241683186799.9495034-CDS-P-wetherbeei_contig53487:12..324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53487 13..324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53487.1.1prot_P-wetherbeei_contig53487.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53487 13..324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53487.1.1

>prot_P-wetherbeei_contig53487.1.1 ID=prot_P-wetherbeei_contig53487.1.1|Name=mRNA_P-wetherbeei_contig53487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
AEIGESWDVFRTKLAEIRRQGFAISRREIDPNRIGLGAPVFDKDRAVLGS
LSFALSYDRTDEALIQKLAPLIMAGAREVERLMDEEPASQSVSPARLRVA
REA*
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mRNA from alignment at P-wetherbeei_contig53487:13..324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53487.1.1 ID=mRNA_P-wetherbeei_contig53487.1.1|Name=mRNA_P-wetherbeei_contig53487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig53487:13..324+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGATCGGCGAAAGCTGGGATGTGTTCCGCACCAAACTCGCCGAGAT CAGGCGCCAGGGCTTTGCCATCTCCCGCCGCGAAATCGATCCCAACCGCA TCGGCCTCGGCGCGCCAGTGTTCGACAAGGATCGCGCGGTGCTGGGCAGC CTGAGTTTCGCTCTCTCCTACGACCGCACGGACGAGGCGCTGATCCAGAA GCTGGCGCCGCTGATCATGGCGGGCGCGCGGGAGGTGGAGCGGTTGATGG ACGAGGAGCCGGCGAGCCAGAGCGTAAGTCCTGCCCGTCTGAGGGTCGCC CGCGAGGCTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53487:13..324+

>mRNA_P-wetherbeei_contig53487.1.1 ID=mRNA_P-wetherbeei_contig53487.1.1|Name=mRNA_P-wetherbeei_contig53487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig53487:13..324+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGAGATCGGCGAAAGCTGGGATGTGTTCCGCACCAAACTCGCCGAGAT
CAGGCGCCAGGGCTTTGCCATCTCCCGCCGCGAAATCGATCCCAACCGCA
TCGGCCTCGGCGCGCCAGTGTTCGACAAGGATCGCGCGGTGCTGGGCAGC
CTGAGTTTCGCTCTCTCCTACGACCGCACGGACGAGGCGCTGATCCAGAA
GCTGGCGCCGCTGATCATGGCGGGCGCGCGGGAGGTGGAGCGGTTGATGG
ACGAGGAGCCGGCGAGCCAGAGCGTAAGTCCTGCCCGTCTGAGGGTCGCC
CGCGAGGCTTAA
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