mRNA_P-wetherbeei_contig12397.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12397.2.1
Unique NamemRNA_P-wetherbeei_contig12397.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A6M4GV98_9PROT (DUF4212 domain-containing protein n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GV98_9PROT)

HSP 1 Score: 144 bits (362), Expect = 3.910e-43
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGED 261
            M+LT KH +YW KNL++TAILLFIWFVVTFVE WYARELN  +F GFPLGFYMSAQGSLA+YV LI  Y  YMN+LD+EYGV+EG+D
Sbjct:    1 MQLTEKHREYWRKNLVITAILLFIWFVVTFVEAWYARELNGVTFFGFPLGFYMSAQGSLAIYVVLIGIYAWYMNRLDVEYGVDEGDD 87          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: UPI00199B7EC6 (DUF4212 domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI00199B7EC6)

HSP 1 Score: 143 bits (360), Expect = 7.670e-43
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGED 261
            M+LT KH++YW KNL++TAILLF+WFV TFVE W+ARELN +SFLGFPLGFYMSAQGSL +YV LI  Y  YMN+LDIEYGV+EG+D
Sbjct:    1 MQLTEKHKEYWRKNLVITAILLFVWFVATFVEAWFARELNQYSFLGFPLGFYMSAQGSLIIYVVLIGIYAWYMNRLDIEYGVDEGDD 87          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A1G3HC73_9RHOO (DUF4212 domain-containing protein n=1 Tax=Rhodocyclales bacterium GWA2_65_20 TaxID=1802017 RepID=A0A1G3HC73_9RHOO)

HSP 1 Score: 142 bits (359), Expect = 1.120e-42
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LTAKH +YWH+NL +T +LL +WFVVTFV G++ARELN  + LGFP GFYMSAQGSL +YVA+IWYY HYMNKLD EYGV EGEDE
Sbjct:    1 MQLTAKHHEYWHRNLKITGLLLGLWFVVTFVMGYFARELNGVTILGFPFGFYMSAQGSLIIYVAIIWYYAHYMNKLDQEYGVHEGEDE 88          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: UPI0019BE860D (DUF4212 domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019BE860D)

HSP 1 Score: 142 bits (357), Expect = 2.270e-42
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LTA+HE+YWHKNL+++AILL IWF+VTFVEGW+ARELN  + LGFPLGFYMSAQGSL +YV LIW Y  YMN LD EY V EGE++
Sbjct:    1 MQLTARHEEYWHKNLVISAILLVIWFIVTFVEGWFARELNGITILGFPLGFYMSAQGSLIIYVILIWIYARYMNNLDREYDVAEGEEQ 88          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A7X1P290_9PROT (DUF4212 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P290_9PROT)

HSP 1 Score: 140 bits (353), Expect = 9.230e-42
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LT KH +YW KNL +T ILL IWFV TFVEGWYARELN  SFLGFPLGFYMSAQGSL +YV LIW Y  YMN+LD EYGV+EGE++
Sbjct:    1 MQLTEKHREYWRKNLTITFILLAIWFVATFVEGWYARELNQLSFLGFPLGFYMSAQGSLIIYVVLIWTYALYMNRLDREYGVQEGEED 88          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: UPI00193C6484 (DUF4212 domain-containing protein n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193C6484)

HSP 1 Score: 140 bits (353), Expect = 9.230e-42
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LT KH +YWHKNL VT ILLFIWFVVTFV  +YARELN+   LGFPLGFYM AQGSL VYV +IWYY  YMNKLD EYGV EGED+
Sbjct:    1 MQLTQKHVEYWHKNLAVTGILLFIWFVVTFVASFYARELNSVVILGFPLGFYMGAQGSLVVYVLIIWYYARYMNKLDQEYGVHEGEDD 88          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A6M4H4N0_9PROT (DUF4212 domain-containing protein n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H4N0_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.080e-40
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGED 261
            MELT +H +YW KNL++T+ILL IWFVVTFVE W+ARELN+ +FL FPLGFYMSAQGSLA+YV LI  Y  YMN+LDI+YGV+EGED
Sbjct:    1 MELTEQHREYWRKNLVITSILLAIWFVVTFVEAWFARELNSITFLSFPLGFYMSAQGSLAIYVILIGVYAWYMNRLDIQYGVDEGED 87          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A497XRA6_9PROT (Putative solute:sodium symporter small subunit n=1 Tax=Sulfurisoma sediminicola TaxID=1381557 RepID=A0A497XRA6_9PROT)

HSP 1 Score: 135 bits (340), Expect = 8.610e-40
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LT KH  YW+KNL +TAILL IWFVVTFV GWYARELN  SF+G PLGFYM AQG+L +YVA+IW+Y  +MN LD+EYGV EGEDE
Sbjct:    1 MQLTQKHHDYWNKNLRITAILLAIWFVVTFVFGWYARELNEISFIG-PLGFYMGAQGALIIYVAIIWFYARFMNNLDLEYGVHEGEDE 87          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A1G0EJP7_9PROT (DUF4212 domain-containing protein n=2 Tax=unclassified Nitrosomonadales TaxID=1660158 RepID=A0A1G0EJP7_9PROT)

HSP 1 Score: 134 bits (336), Expect = 3.610e-39
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LT KH +YW++NL VT ILL +WF+VTFV G++ARELN  +  GFPLGFYMSAQGSLA+YVA+IW+Y HYMN LD EYGV EG++E
Sbjct:    1 MQLTQKHHEYWNRNLKVTGILLALWFLVTFVMGYFARELNGITVFGFPLGFYMSAQGSLAIYVAIIWFYAHYMNNLDKEYGVHEGKEE 88          
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Match: A0A1G0D192_9PROT (DUF4212 domain-containing protein n=1 Tax=Gallionellales bacterium RBG_16_56_9 TaxID=1798249 RepID=A0A1G0D192_9PROT)

HSP 1 Score: 133 bits (335), Expect = 5.130e-39
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLGFYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE 264
            M+LT KH +YW++NL +TA LL +WF+VTFV G++ARELN  + LGFPLGFYM AQGSL VYV +IWYY HYMN LD EYGV EGE+E
Sbjct:    1 MQLTQKHHEYWNRNLKITATLLALWFLVTFVMGYFARELNGITILGFPLGFYMGAQGSLIVYVCIIWYYAHYMNNLDQEYGVHEGEEE 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12397.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6M4GV98_9PROT3.910e-4374.71DUF4212 domain-containing protein n=1 Tax=Usitatib... [more]
UPI00199B7EC67.670e-4373.56DUF4212 domain-containing protein n=1 Tax=Burkhold... [more]
A0A1G3HC73_9RHOO1.120e-4272.73DUF4212 domain-containing protein n=1 Tax=Rhodocyc... [more]
UPI0019BE860D2.270e-4271.59DUF4212 domain-containing protein n=1 Tax=Burkhold... [more]
A0A7X1P290_9PROT9.230e-4273.86DUF4212 domain-containing protein n=1 Tax=Betaprot... [more]
UPI00193C64849.230e-4275.00DUF4212 domain-containing protein n=1 Tax=Azospira... [more]
A0A6M4H4N0_9PROT1.080e-4072.41DUF4212 domain-containing protein n=1 Tax=Usitatib... [more]
A0A497XRA6_9PROT8.610e-4071.59Putative solute:sodium symporter small subunit n=1... [more]
A0A1G0EJP7_9PROT3.610e-3968.18DUF4212 domain-containing protein n=2 Tax=unclassi... [more]
A0A1G0D192_9PROT5.130e-3968.18DUF4212 domain-containing protein n=1 Tax=Gallione... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12397contigP-wetherbeei_contig12397:1218..1484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1244869.H261_00460
PFAMsDUF4212
Model size267
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.18e-37
EggNOG OGsCOG4327@1|root,COG4327@2|Bacteria,1N0TK@1224|Proteobacteria,2UC3P@28211|Alphaproteobacteria,2JTZR@204441|Rhodospirillales
DescriptionDomain of unknown function (DUF4212)
Cds size267
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.565547-CDS-P-wetherbeei_contig12397:1217..14841683185947.565547-CDS-P-wetherbeei_contig12397:1217..1484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12397 1218..1484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12397.2.1prot_P-wetherbeei_contig12397.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12397 1218..1484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12397.2.1

>prot_P-wetherbeei_contig12397.2.1 ID=prot_P-wetherbeei_contig12397.2.1|Name=mRNA_P-wetherbeei_contig12397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MELTAKHEQYWHKNLIVTAILLFIWFVVTFVEGWYARELNAFSFLGFPLG
FYMSAQGSLAVYVALIWYYQHYMNKLDIEYGVEEGEDE*
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mRNA from alignment at P-wetherbeei_contig12397:1218..1484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12397.2.1 ID=mRNA_P-wetherbeei_contig12397.2.1|Name=mRNA_P-wetherbeei_contig12397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig12397:1218..1484+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTAACTGCCAAACACGAGCAGTACTGGCACAAAAATCTGATCGT CACCGCGATCTTGCTGTTCATCTGGTTCGTCGTCACCTTCGTCGAAGGCT GGTATGCGCGTGAATTGAACGCGTTTTCCTTCCTCGGCTTCCCGCTCGGC TTTTATATGTCGGCGCAGGGTTCGCTCGCCGTGTATGTCGCGTTGATCTG GTACTACCAGCATTACATGAACAAACTCGATATTGAATACGGCGTGGAAG AAGGAGAAGACGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12397:1218..1484+

>mRNA_P-wetherbeei_contig12397.2.1 ID=mRNA_P-wetherbeei_contig12397.2.1|Name=mRNA_P-wetherbeei_contig12397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig12397:1218..1484+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTAACTGCCAAACACGAGCAGTACTGGCACAAAAATCTGATCGT
CACCGCGATCTTGCTGTTCATCTGGTTCGTCGTCACCTTCGTCGAAGGCT
GGTATGCGCGTGAATTGAACGCGTTTTCCTTCCTCGGCTTCCCGCTCGGC
TTTTATATGTCGGCGCAGGGTTCGCTCGCCGTGTATGTCGCGTTGATCTG
GTACTACCAGCATTACATGAACAAACTCGATATTGAATACGGCGTGGAAG
AAGGAGAAGACGAATGA
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