mRNA_P-wetherbeei_contig53449.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53449.1.1
Unique NamemRNA_P-wetherbeei_contig53449.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: A0A2E4FSH2_9BACT (SAM-dependent methyltransferase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E4FSH2_9BACT)

HSP 1 Score: 226 bits (575), Expect = 1.600e-71
Identity = 106/171 (61.99%), Postives = 130/171 (76.02%), Query Frame = 1
Query:    1 DLVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            +L+AAIR G+A LGKTP TVT++DLAPV+EFH+GGR A++ +L QL L  GQHVLD+G G+GG ARFAA  Y   VTG+DLT ++V T  +L  WVGL+DR   RQGSA +MPF   + DAAYMLHVGMNIADK+ LC E  RVL+PG  F IYD+MR GEG + + VPWA
Sbjct:   14 ELLAAIRDGVARLGKTPATVTVDDLAPVDEFHVGGRQASEHILGQLGLTQGQHVLDVGCGLGGSARFAAIRYGCHVTGLDLTEEFVTTGQVLCDWVGLADRVALRQGSAVAMPFEAEAFDAAYMLHVGMNIADKDRLCEEVHRVLRPGASFGIYDLMRKGEGDLAYPVPWA 184          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: UPI0020005CC4 (methyltransferase domain-containing protein n=1 Tax=Bradyrhizobium sp. 195 TaxID=2782662 RepID=UPI0020005CC4)

HSP 1 Score: 225 bits (574), Expect = 2.270e-71
Identity = 106/171 (61.99%), Postives = 130/171 (76.02%), Query Frame = 1
Query:    1 DLVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            DLV AIR G+ +LGK  ++VT++DLAPV+EFHIGGR A+++ LDQL L P +H LD+G G+GG ARFAA+ Y  +VTGIDLTP+Y+ETA ++ GWVGL DR    QGSA ++PF  GS D AYMLHVGMNI DK  LC E  RVLK   LF IYDVMR G+G +T+ VPWA
Sbjct:   15 DLVTAIRKGIESLGKKIDSVTVDDLAPVDEFHIGGRQASEDFLDQLELNPERHALDVGCGLGGAARFAASRYGCQVTGIDLTPEYIETAKVVCGWVGLDDRVFLHQGSALALPFANGSFDRAYMLHVGMNIDDKMKLCSEVNRVLKGNSLFGIYDVMRTGDGELTYPVPWA 185          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: UPI000D3B4894 (methyltransferase domain-containing protein n=1 Tax=Bradyrhizobium algeriense TaxID=634784 RepID=UPI000D3B4894)

HSP 1 Score: 225 bits (573), Expect = 3.220e-71
Identity = 104/170 (61.18%), Postives = 129/170 (75.88%), Query Frame = 1
Query:    4 LVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            L+AAIR+G+ +LGKT ++VT++DLAPV+EFHIGGR A++  L+QL L P  H+LD+G G+GGPARF A+ Y  RV GIDLTP+YVET   +  WV L+DR +  QGSA SMPF  G+ D AYMLHVGMNI DK  LC E  RVL+PG LF IYDVM+  +G +TF VPWA
Sbjct:   16 LIAAIRSGIESLGKTTDSVTVDDLAPVDEFHIGGRQASEHFLEQLDLTPEMHILDVGCGLGGPARFVASRYRCRVDGIDLTPEYVETGQEICKWVSLADRISLHQGSALSMPFADGTFDGAYMLHVGMNIEDKAGLCLEVGRVLRPGSLFGIYDVMKTDDGELTFPVPWA 185          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: A0A7W6T9D9_9BRAD (Ubiquinone/menaquinone biosynthesis C-methylase UbiE n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A7W6T9D9_9BRAD)

HSP 1 Score: 218 bits (556), Expect = 1.500e-68
Identity = 103/170 (60.59%), Postives = 127/170 (74.71%), Query Frame = 1
Query:    4 LVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            L+  I +GLA +GKT +TVT++DL+ V+EFHIGGR AT+E++ QL +    HVLD+GSG+GGPARF A  Y  RV+G+DLTPDYVET   L  W+GL DR T  Q SA +MPF + + + AYMLHVGMNI DKE LC E ARVL+PG LFA+YDVMR  EG + F VPWA
Sbjct:   23 LIEVIESGLAQMGKTTDTVTIDDLSAVDEFHIGGRKATEELMAQLGITAADHVLDVGSGLGGPARFLADRYKCRVSGVDLTPDYVETGLRLCQWLGLDDRVTLHQSSALAMPFQEATFNKAYMLHVGMNIEDKENLCLEIARVLQPGALFAVYDVMRTAEGELLFPVPWA 192          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: A0A382D1E4_9ZZZZ (Methyltransf_25 domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382D1E4_9ZZZZ)

HSP 1 Score: 216 bits (549), Expect = 1.520e-67
Identity = 105/167 (62.87%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   16 IRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWAA 516
            I+ GLA+LGK+ E VTLEDL PV+EFHIGGR AT E LDQL L+   HVLD+G GIGG ARFAA  Y   VTG+DLT +Y+ET   L  WVGL+DR T +QGS T MPF   S D AYM+HVGMNIADK AL  +  RVLKPGG   IYDVMR+G+G +TF +PW++
Sbjct:   22 IKNGLASLGKSAENVTLEDLGPVDEFHIGGREATGEFLDQLTLSADDHVLDVGCGIGGAARFAAERYGSTVTGLDLTAEYIETGQALCAWVGLADRITLQQGSGTDMPFADHSFDKAYMMHVGMNIADKVALVGQLHRVLKPGGRLGIYDVMRVGDGDLTFPLPWSS 188          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: UPI001C02A31F (methyltransferase domain-containing protein n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C02A31F)

HSP 1 Score: 215 bits (547), Expect = 2.790e-67
Identity = 102/170 (60.00%), Postives = 127/170 (74.71%), Query Frame = 1
Query:    4 LVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            L AAIR G+ +LGKT  +VT++DLAPV+EFHIGGR A+++ L QL L+P +HVLD+G G+GG ARF A  Y  RVTGIDLTP+YVETA +L  WVGL +  +  QGSA +MPF   + D AYMLHVGMNI DK  LC E  RVL+   LF IYDVM++G+G +T+ VPWA
Sbjct:   16 LAAAIRGGIESLGKTINSVTVDDLAPVDEFHIGGRQASEDFLGQLDLSPEKHVLDVGCGLGGAARFVANRYGCRVTGIDLTPEYVETAKVLCRWVGLDNSISLHQGSALAMPFADRAFDRAYMLHVGMNIDDKAKLCSEVGRVLRSNALFGIYDVMKVGDGELTYPVPWA 185          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: A0A090DEZ1_MESPL (Methyltransf_25 domain-containing protein n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A090DEZ1_MESPL)

HSP 1 Score: 210 bits (535), Expect = 1.830e-65
Identity = 103/171 (60.23%), Postives = 124/171 (72.51%), Query Frame = 1
Query:    4 LVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWAA 516
            L+A IR GLA LGKT  TVT EDL+PV+EFHIGGR AT E+  QL L  G  VLDIG G+GGPAR  A  Y  +VTGIDLT DYVE   +L+GW+ L DR + +QG A ++PF  GS  AAYMLHVGMNIADK AL  EAARVL+ G  F ++DVMR G G +++ +PWA+
Sbjct:   18 LIADIRDGLAALGKTESTVTAEDLSPVDEFHIGGRAATGELAGQLALTTGDRVLDIGCGLGGPARQIAERYGCQVTGIDLTRDYVEAGAVLSGWLHLEDRVSLQQGDALALPFADGSFTAAYMLHVGMNIADKTALFSEAARVLRAGARFGVFDVMRTGAGELSYPLPWAS 188          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: A0A059E704_9PROT (Methyltransf_25 domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A059E704_9PROT)

HSP 1 Score: 210 bits (534), Expect = 2.600e-65
Identity = 104/171 (60.82%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    1 DLVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            DL+ AI  GL+ LG  P  VT++DL PV+EFHIGGR A+K  LDQL +  G  VLD+G G+GG ARFAAATY  +VTGIDLTP+YVET  +L  WVGLSDR + RQGSA SMPF       AYM+HVGMNI  KEAL  E  RVL  G  F IYD+MR GEG + + VPWA
Sbjct:   15 DLLQAIEDGLSNLGLGPNRVTVDDLGPVDEFHIGGRIASKHFLDQLDINAGMTVLDVGCGLGGGARFAAATYEAQVTGIDLTPEYVETGQVLCDWVGLSDRVSLRQGSALSMPFPDREFQRAYMMHVGMNIDAKEALFAEVHRVLDSGARFGIYDIMRTGEGDLAYPVPWA 185          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: UPI000AAE5FCC (methyltransferase domain-containing protein n=1 Tax=Mesorhizobium sp. WSM1497 TaxID=278153 RepID=UPI000AAE5FCC)

HSP 1 Score: 210 bits (534), Expect = 2.600e-65
Identity = 104/172 (60.47%), Postives = 125/172 (72.67%), Query Frame = 1
Query:    1 DLVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWAA 516
             LVA IR GLA +GKT  TVT EDL+PV+EFHIGGR AT E+  QL L P   VLDIG G+GGPAR  AA Y+ +VTGIDLT DYVE   IL+GW+ L +R + +QG+A  MPF  GS  AAYMLHVGMNIADK AL  E ARVL+ G  F ++DVMR G G +++ +PWA+
Sbjct:   17 SLVADIRDGLAAMGKTESTVTAEDLSPVDEFHIGGRAATGELAGQLALNPRDRVLDIGCGLGGPARQIAAHYDCQVTGIDLTRDYVEAGNILSGWLHLGERVSLQQGNALGMPFADGSFTAAYMLHVGMNIADKSALFSEVARVLRAGARFGVFDVMRTGVGELSYPLPWAS 188          
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Match: A0A7C1U735_9SPHN (Class I SAM-dependent methyltransferase n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A7C1U735_9SPHN)

HSP 1 Score: 209 bits (533), Expect = 3.790e-65
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 1
Query:    1 DLVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAPGQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSDRATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGLFAIYDVMRLGEGAITFTVPWA 513
            DL++ I   L   GKT   VTLEDLAPV+EFHIGGR AT+  LDQL+     ++LD+G G+GGPARFAA  YN+ VTGIDLTP+++ET  +L  WVG+ ++ T  QG A SMPF  G+LD  YM+HVGMNIADK AL RE  RVL+PG  F +YDVM L +G +++ VPWA
Sbjct:   15 DLLSDIETALIRQGKTIADVTLEDLAPVDEFHIGGRRATEHFLDQLNFVAQSNILDVGCGLGGPARFAADRYNIYVTGIDLTPEFIETGQVLCLWVGMEEQVTLHQGGALSMPFADGALDGGYMIHVGMNIADKAALFREIYRVLRPGSHFGVYDVMLLNDGDLSYPVPWA 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53449.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E4FSH2_9BACT1.600e-7161.99SAM-dependent methyltransferase n=2 Tax=Acidobacte... [more]
UPI0020005CC42.270e-7161.99methyltransferase domain-containing protein n=1 Ta... [more]
UPI000D3B48943.220e-7161.18methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W6T9D9_9BRAD1.500e-6860.59Ubiquinone/menaquinone biosynthesis C-methylase Ub... [more]
A0A382D1E4_9ZZZZ1.520e-6762.87Methyltransf_25 domain-containing protein n=1 Tax=... [more]
UPI001C02A31F2.790e-6760.00methyltransferase domain-containing protein n=3 Ta... [more]
A0A090DEZ1_MESPL1.830e-6560.23Methyltransf_25 domain-containing protein n=3 Tax=... [more]
A0A059E704_9PROT2.600e-6560.82Methyltransf_25 domain-containing protein n=4 Tax=... [more]
UPI000AAE5FCC2.600e-6560.47methyltransferase domain-containing protein n=1 Ta... [more]
A0A7C1U735_9SPHN3.790e-6557.89Class I SAM-dependent methyltransferase n=1 Tax=Sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53449contigP-wetherbeei_contig53449:15..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1207058.L53_09380
PFAMsMethyltransf_11,Methyltransf_25
Model size516
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.26e-66
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1R6ZI@1224|Proteobacteria,2TRC6@28211|Alphaproteobacteria
DescriptionubiE/COQ5 methyltransferase family
Cds size516
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.4036603-CDS-P-wetherbeei_contig53449:14..5301683186799.4036603-CDS-P-wetherbeei_contig53449:14..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53449 15..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53449.1.1prot_P-wetherbeei_contig53449.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53449 15..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53449.1.1

>prot_P-wetherbeei_contig53449.1.1 ID=prot_P-wetherbeei_contig53449.1.1|Name=mRNA_P-wetherbeei_contig53449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
DLVAAIRAGLATLGKTPETVTLEDLAPVEEFHIGGRPATKEVLDQLHLAP
GQHVLDIGSGIGGPARFAAATYNVRVTGIDLTPDYVETAGILTGWVGLSD
RATFRQGSATSMPFTQGSLDAAYMLHVGMNIADKEALCREAARVLKPGGL
FAIYDVMRLGEGAITFTVPWAA
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mRNA from alignment at P-wetherbeei_contig53449:15..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53449.1.1 ID=mRNA_P-wetherbeei_contig53449.1.1|Name=mRNA_P-wetherbeei_contig53449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig53449:15..530+ (Phaeothamnion wetherbeei SAG_119_79)
GATCTGGTCGCGGCCATCCGCGCCGGCTTGGCTACGCTCGGCAAGACGCC GGAAACCGTCACGCTCGAGGATCTGGCGCCGGTCGAGGAATTCCACATCG GCGGCCGGCCGGCGACCAAGGAGGTGCTGGACCAGTTGCATCTGGCGCCG GGGCAGCACGTGCTCGACATCGGCAGCGGCATCGGCGGCCCGGCGCGCTT CGCCGCCGCGACCTATAATGTGCGCGTCACCGGCATCGACCTGACGCCCG ATTATGTGGAAACCGCCGGGATCCTGACCGGGTGGGTGGGCTTGAGCGAC CGCGCCACCTTCCGCCAGGGCAGCGCCACCTCCATGCCCTTCACCCAAGG CAGCCTGGACGCCGCCTATATGCTGCATGTCGGCATGAACATCGCCGACA AAGAAGCCTTATGCCGCGAGGCCGCGCGCGTCCTGAAGCCCGGCGGCCTG TTCGCCATCTATGACGTGATGCGCCTGGGCGAAGGCGCCATCACATTCAC CGTGCCCTGGGCCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53449:15..530+

>mRNA_P-wetherbeei_contig53449.1.1 ID=mRNA_P-wetherbeei_contig53449.1.1|Name=mRNA_P-wetherbeei_contig53449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig53449:15..530+ (Phaeothamnion wetherbeei SAG_119_79)
GATCTGGTCGCGGCCATCCGCGCCGGCTTGGCTACGCTCGGCAAGACGCC
GGAAACCGTCACGCTCGAGGATCTGGCGCCGGTCGAGGAATTCCACATCG
GCGGCCGGCCGGCGACCAAGGAGGTGCTGGACCAGTTGCATCTGGCGCCG
GGGCAGCACGTGCTCGACATCGGCAGCGGCATCGGCGGCCCGGCGCGCTT
CGCCGCCGCGACCTATAATGTGCGCGTCACCGGCATCGACCTGACGCCCG
ATTATGTGGAAACCGCCGGGATCCTGACCGGGTGGGTGGGCTTGAGCGAC
CGCGCCACCTTCCGCCAGGGCAGCGCCACCTCCATGCCCTTCACCCAAGG
CAGCCTGGACGCCGCCTATATGCTGCATGTCGGCATGAACATCGCCGACA
AAGAAGCCTTATGCCGCGAGGCCGCGCGCGTCCTGAAGCCCGGCGGCCTG
TTCGCCATCTATGACGTGATGCGCCTGGGCGAAGGCGCCATCACATTCAC
CGTGCCCTGGGCCGCG
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