mRNA_P-wetherbeei_contig53445.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53445.1.1
Unique NamemRNA_P-wetherbeei_contig53445.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A6J6Z7N8_9ZZZZ (Unannotated protein n=2 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6Z7N8_9ZZZZ)

HSP 1 Score: 233 bits (593), Expect = 7.360e-72
Identity = 123/180 (68.33%), Postives = 145/180 (80.56%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRLVG-LLRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLFV 537
            R+LL++SLGG FGAVFGVPLAGAVFA+EVQ +GRIRYE LVPALTASLVGDLV++GLGY HE R      L+  ++ +VAIAG+AFGL +AAF  L H ++ L+  +L W PLRP +GG ALLAL+ L G DY GLSLPLVD +LAG+H    VFALKL+FTAITLGSGFPGGEVTPLFV
Sbjct:  160 RLLLISSLGGAFGAVFGVPLAGAVFALEVQTIGRIRYEALVPALTASLVGDLVVQGLGYDHEVRRQFDIPLDGVLLAKVAIAGVAFGLTAAAFSALAHAIKGLLARVLPWSPLRPFVGGVALLALVLLCGHDYSGLSLPLVDRSLAGEHLSFVVFALKLLFTAITLGSGFPGGEVTPLFV 339          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: UPI000E341704 (chloride channel protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E341704)

HSP 1 Score: 229 bits (584), Expect = 4.800e-71
Identity = 124/180 (68.89%), Postives = 140/180 (77.78%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRLVG-LLRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLFV 537
            R+LL+A+LGGGFG+VFGVPLAGAVFAMEVQAVGR+RYE LVPALTAS+VGDLV+ GLGY H     +   L A V ++VA AGLAFGLAS AF+E  H V  +V   + W PLRP LGG  L+AL  L GRDYLGLSLPL D ALAG      VFALKL+FTA+TLGSGFPGGEVTPLFV
Sbjct:  150 RLLLIAALGGGFGSVFGVPLAGAVFAMEVQAVGRVRYEALVPALTASVVGDLVVSGLGYEHAALPQIATGLGAVVALKVAAAGLAFGLASVAFIESIHGVAAVVRRYVTWAPLRPALGGVVLVALAALCGRDYLGLSLPLADDALAGVGVAGYVFALKLLFTAVTLGSGFPGGEVTPLFV 329          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A6I3WXQ0_9ACTN (Voltage-gated chloride channel protein n=2 Tax=root TaxID=1 RepID=A0A6I3WXQ0_9ACTN)

HSP 1 Score: 218 bits (556), Expect = 1.750e-66
Identity = 109/180 (60.56%), Postives = 143/180 (79.44%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRLVG-LLRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLFV 537
            R++L+AS+ GGFGAVFGVP+AGAVFA+EVQ++GR+R+E +VPALTAS+VGD VLRGLGY H   + LM H+  W++IR+A AGL FGL +A +    H ++ L+   +R  PLRP +GGFA++AL+ LFG +Y GLSLPL+  AL G+H G  VFALKL+FTA+TLG+GF GGEVTPLF+
Sbjct:  157 RVMLIASIAGGFGAVFGVPVAGAVFALEVQSIGRMRFEAIVPALTASIVGDQVLRGLGYHHADVAQLMPHVTPWLLIRIAGAGLLFGLVAAGYSAAAHGIKSLMAHRIRRAPLRPFIGGFAVIALVLLFGHEYQGLSLPLIGRALGGEHLGFAVFALKLLFTAVTLGTGFVGGEVTPLFM 336          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A6I2WY01_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I2WY01_9ACTN)

HSP 1 Score: 207 bits (527), Expect = 6.360e-63
Identity = 104/179 (58.10%), Postives = 137/179 (76.54%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTH-LVQRLVGLLRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLF 534
            R LL+A+L GGFGAVFGVP+AGAVFA+EVQ++GR+RYE +VPAL+AS+VGDL++RGLGY H  R  L   ++ W+++++ + G+AFGLA AAF+ELT  L       +R+PPLR  LGG AL+ L    G DYLG+SL ++D ALAGD     VFALK++F AI++G+ FPGGEVTPLF
Sbjct:  195 RTLLIAALAGGFGAVFGVPVAGAVFALEVQSLGRVRYEAIVPALSASIVGDLIVRGLGYHHALRVPLDPRIDTWLILKLLLGGVAFGLAGAAFIELTEGLKSATARFIRFPPLRTFLGGLALVGLTAWVGHDYLGMSLGIIDRALAGDRLSFAVFALKILFAAISIGTLFPGGEVTPLF 373          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A7K0U093_9ACTN (Voltage-gated chloride channel protein n=5 Tax=root TaxID=1 RepID=A0A7K0U093_9ACTN)

HSP 1 Score: 207 bits (527), Expect = 7.650e-62
Identity = 104/179 (58.10%), Postives = 137/179 (76.54%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTH-LVQRLVGLLRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLF 534
            R LL+A+L GGFGAVFGVP+ GAVFA+EVQ++GR+RYE +VPAL+AS+VGDL++RGLGY H  R  L   ++ W+++++ +AG+AFGLA AAF+ELT  L       + +PPLR  LGG AL+ L    G DYLG+SL ++D ALAGD     VFALK++FTAI++G+ FPGGEVTPLF
Sbjct:  195 RTLLIAALAGGFGAVFGVPVTGAVFALEVQSLGRVRYEAIVPALSASIVGDLIVRGLGYHHALRVPLDPRIDTWLILKLLLAGVAFGLAGAAFIELTEGLKSATARFIHFPPLRTFLGGLALVGLTAWVGHDYLGMSLGIIDRALAGDRLSFAVFALKILFTAISIGTLFPGGEVTPLF 373          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A6I3C5A5_9ACTN (Voltage-gated chloride channel protein n=3 Tax=root TaxID=1 RepID=A0A6I3C5A5_9ACTN)

HSP 1 Score: 206 bits (523), Expect = 1.390e-61
Identity = 109/180 (60.56%), Postives = 134/180 (74.44%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRLVGL-LRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLFV 537
            R++L+ASL GGFGAVFGVP+AGAVFA+EVQ++GR+R+E LVPALTAS+VGD VLR LG  H    AL  H+ A V++RVA AGL FGL  AA+    H ++ ++   + W PLRP +GG A +AL+ LFG DY GLS PL   AL GDH G  VFALKL+FT I +GSGF GGEVTPLF+
Sbjct:  152 RVMLIASLAGGFGAVFGVPVAGAVFALEVQSIGRMRFEALVPALTASIVGDRVLRALGAKHSLFDALSPHVTASVLLRVAAAGLLFGLVGAAYSSWVHSLKAMLARRVPWAPLRPFIGGTATIALVLLFGHDYQGLSSPLTARALHGDHLGFAVFALKLLFTIIAIGSGFIGGEVTPLFM 331          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A6I3F5V5_9ACTN (Voltage-gated chloride channel protein n=2 Tax=root TaxID=1 RepID=A0A6I3F5V5_9ACTN)

HSP 1 Score: 197 bits (501), Expect = 2.720e-58
Identity = 105/182 (57.69%), Postives = 136/182 (74.73%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSAL-MFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRL-VGLLRWPPLRPVLGGFALLALIGLFG-RDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLFV 537
            RIL++A +  GFGA+FGVPLAGAVF +EVQ+VGRI+Y+ +VP+LT +LVGDLV+RGLG  H P   L    L+  V++++A+AG+ FGL SA FV  T LV+     +  WPP RP++GG  +LA++  FG R+YLGLSLPL + AL G+ T A+VFALKL+FT ITLG GF GGEVTPL V
Sbjct:  155 RILMIAGVSAGFGALFGVPLAGAVFGIEVQSVGRIKYDAVVPSLTGALVGDLVVRGLGVTHMPTPELGAIDLSVGVILKLAVAGIVFGLVSAIFVSSTRLVKAFGARVATWPPARPLIGGALVLAMMVAFGTREYLGLSLPLAESALGGNDTSASVFALKLLFTVITLGFGFYGGEVTPLLV 336          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A6J5YFN5_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J5YFN5_9ZZZZ)

HSP 1 Score: 194 bits (492), Expect = 5.550e-57
Identity = 100/182 (54.95%), Postives = 135/182 (74.18%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSAL-MFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRLVG-LLRWPPLRPVLGGFALLALIGLFG-RDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLFV 537
            RI+++A++  GFGA+FGVPLAGAVF +EVQ++GR++YE +VPA   S+VGDLV+RGLG  H   + L   H++A  ++++   G+ FGL SA F+    L++++    + W PLRP +GG  +LAL+ + G RDYLGLSLPL   ALAGDHT A+VFALKL+FT +TLG GF GGEVTPLFV
Sbjct:  147 RIVMIAAMSAGFGALFGVPLAGAVFGLEVQSIGRVKYEAIVPAFVGSIVGDLVVRGLGVKHPAIAELGTVHVDAVFLLKMVAIGVIFGLISALFIHAVRLLKQIAARFINWTPLRPFIGGALVLALMLIVGNRDYLGLSLPLASSALAGDHTSASVFALKLLFTVVTLGFGFYGGEVTPLFV 328          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: UPI001AA0B0FA (voltage-gated chloride channel family protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0B0FA)

HSP 1 Score: 194 bits (494), Expect = 1.800e-55
Identity = 110/184 (59.78%), Postives = 137/184 (74.46%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHEPRSALM-FHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQRLVGLLR-WPPLRPVLGGFALLALIGLFG-RDYLGLSLPLVDHALAGDHTGATVFAL--KLIFTAITLGSGFPGGEVTPLFV 537
            RI+L+A+L GGFGAVFGVP+AG VFA+EVQ++GR+RY+ LVPA+ ASLVGDLV+RGLG  H P  A+    L+A +V +V +AGLAFGL +  F EL H ++R+  +   WPPLRP +GGFA++ L  L G RDY GLSLPLV  +LAG   G   FA   K +FTA+TLGSGF GGEVTPLFV
Sbjct:  355 RIMLIAALAGGFGAVFGVPVAGFVFALEVQSIGRMRYDALVPAVAASLVGDLVVRGLGVNHTPVPAIADIELSAALVGKVVVAGLAFGLTALFFAELAHGIRRVFSVWSVWPPLRPFIGGFAVIGLTYLVGNRDYNGLSLPLVTASLAGG-AGVVAFAFGWKFLFTAVTLGSGFQGGEVTPLFV 537          
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Match: A0A3N5HYY7_9PLAN (Voltage-gated chloride channel protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5HYY7_9PLAN)

HSP 1 Score: 180 bits (456), Expect = 5.040e-52
Identity = 102/182 (56.04%), Postives = 124/182 (68.13%), Query Frame = 1
Query:    1 RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVGDLVLRGLGYVHE--PRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTHLVQ-RLVGLLRWPPLRPVLGGFALLALIGLFG-RDYLGLSLPLVDHALAGDHTGATVFALKLIFTAITLGSGFPGGEVTPLF 534
            R+LL++ + GGFGAVFG PLAG VF +EV A GR+RYE LVP L AS VGDLV R  G  H   P +A+      W+ + VA+AG+AFGLAS  FVELTH +Q R+   +  P LRP  GG  ++AL  L G RDYLGLSLPL+D A          FALK++FTA+TLG+GF GGEVTPLF
Sbjct:  143 RLLLISGISGGFGAVFGTPLAGTVFGLEVLAAGRVRYEALVPCLVASTVGDLVCRACGIEHHVYPAAAMPTESARWL-LWVALAGVAFGLASLVFVELTHAIQKRVANRVVTPWLRPFFGGLGIVALTYLVGSRDYLGLSLPLIDRAFTAGGLFLGAFALKILFTAVTLGTGFKGGEVTPLF 323          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J6Z7N8_9ZZZZ7.360e-7268.33Unannotated protein n=2 Tax=freshwater metagenome ... [more]
UPI000E3417044.800e-7168.89chloride channel protein n=1 Tax=Desertimonas flav... [more]
A0A6I3WXQ0_9ACTN1.750e-6660.56Voltage-gated chloride channel protein n=2 Tax=roo... [more]
A0A6I2WY01_9ACTN6.360e-6358.10Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A7K0U093_9ACTN7.650e-6258.10Voltage-gated chloride channel protein n=5 Tax=roo... [more]
A0A6I3C5A5_9ACTN1.390e-6160.56Voltage-gated chloride channel protein n=3 Tax=roo... [more]
A0A6I3F5V5_9ACTN2.720e-5857.69Voltage-gated chloride channel protein n=2 Tax=roo... [more]
A0A6J5YFN5_9ZZZZ5.550e-5754.95Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
UPI001AA0B0FA1.800e-5559.78voltage-gated chloride channel family protein n=1 ... [more]
A0A3N5HYY7_9PLAN5.040e-5256.04Voltage-gated chloride channel protein n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53445contigP-wetherbeei_contig53445:1..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog215803.DB30_3813
PFAMsVoltage_CLC
Model size537
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.56e-42
EggNOG OGsCOG0038@1|root,COG0038@2|Bacteria,1MV4K@1224|Proteobacteria,42NVC@68525|delta/epsilon subdivisions,2WKJI@28221|Deltaproteobacteria,2YWZW@29|Myxococcales
DescriptionVoltage gated chloride channel
Cds size537
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.3743112-CDS-P-wetherbeei_contig53445:0..5371683186799.3743112-CDS-P-wetherbeei_contig53445:0..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53445 1..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53445.1.1prot_P-wetherbeei_contig53445.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53445 1..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53445.1.1

>prot_P-wetherbeei_contig53445.1.1 ID=prot_P-wetherbeei_contig53445.1.1|Name=mRNA_P-wetherbeei_contig53445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
RILLVASLGGGFGAVFGVPLAGAVFAMEVQAVGRIRYEGLVPALTASLVG
DLVLRGLGYVHEPRSALMFHLNAWVVIRVAIAGLAFGLASAAFVELTHLV
QRLVGLLRWPPLRPVLGGFALLALIGLFGRDYLGLSLPLVDHALAGDHTG
ATVFALKLIFTAITLGSGFPGGEVTPLFV
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mRNA from alignment at P-wetherbeei_contig53445:1..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53445.1.1 ID=mRNA_P-wetherbeei_contig53445.1.1|Name=mRNA_P-wetherbeei_contig53445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53445:1..537+ (Phaeothamnion wetherbeei SAG_119_79)
CGGATCCTGCTCGTCGCCTCGCTCGGCGGCGGCTTCGGCGCGGTGTTCGG TGTGCCACTCGCCGGCGCCGTGTTCGCGATGGAGGTGCAGGCCGTCGGGC GCATCCGTTACGAGGGCCTGGTCCCGGCGCTGACCGCGTCGCTCGTCGGT GATCTCGTGCTCCGCGGTCTCGGCTACGTGCACGAACCTCGTTCCGCCCT CATGTTTCACCTGAACGCGTGGGTCGTCATCCGCGTGGCGATCGCCGGAC TCGCCTTCGGTCTCGCCAGTGCAGCGTTCGTCGAGCTGACCCACCTCGTG CAACGGCTCGTCGGCCTCCTGCGGTGGCCGCCGTTGCGGCCGGTGCTCGG CGGCTTCGCGCTGCTGGCCCTGATCGGGTTGTTCGGACGCGACTACCTCG GCCTCTCACTGCCGCTCGTCGACCACGCTCTCGCCGGCGATCACACGGGA GCGACGGTCTTCGCGCTGAAGCTGATCTTCACCGCGATCACGCTCGGCTC CGGCTTCCCCGGCGGTGAGGTCACGCCGCTGTTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53445:1..537+

>mRNA_P-wetherbeei_contig53445.1.1 ID=mRNA_P-wetherbeei_contig53445.1.1|Name=mRNA_P-wetherbeei_contig53445.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig53445:1..537+ (Phaeothamnion wetherbeei SAG_119_79)
CGGATCCTGCTCGTCGCCTCGCTCGGCGGCGGCTTCGGCGCGGTGTTCGG
TGTGCCACTCGCCGGCGCCGTGTTCGCGATGGAGGTGCAGGCCGTCGGGC
GCATCCGTTACGAGGGCCTGGTCCCGGCGCTGACCGCGTCGCTCGTCGGT
GATCTCGTGCTCCGCGGTCTCGGCTACGTGCACGAACCTCGTTCCGCCCT
CATGTTTCACCTGAACGCGTGGGTCGTCATCCGCGTGGCGATCGCCGGAC
TCGCCTTCGGTCTCGCCAGTGCAGCGTTCGTCGAGCTGACCCACCTCGTG
CAACGGCTCGTCGGCCTCCTGCGGTGGCCGCCGTTGCGGCCGGTGCTCGG
CGGCTTCGCGCTGCTGGCCCTGATCGGGTTGTTCGGACGCGACTACCTCG
GCCTCTCACTGCCGCTCGTCGACCACGCTCTCGCCGGCGATCACACGGGA
GCGACGGTCTTCGCGCTGAAGCTGATCTTCACCGCGATCACGCTCGGCTC
CGGCTTCCCCGGCGGTGAGGTCACGCCGCTGTTCGTC
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