mRNA_P-wetherbeei_contig53443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53443.1.1
Unique NamemRNA_P-wetherbeei_contig53443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A835YXE5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE5_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.780e-80
Identity = 125/151 (82.78%), Postives = 139/151 (92.05%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIG 453
            DTLVLRMKP+QWQ VIDLNL+GVFYCSQAAAK MLK+R+GRIVNI+SVVGQIGNPGQANYAAAKGGVI MTR+M KEFA+RGVT NAVCPGFIESDMTA+L L+ IK MIPMARLGKASEVAG+V +L TD +A Y+TGHTF+VDGGIAIG
Sbjct:   94 DTLVLRMKPDQWQDVIDLNLTGVFYCSQAAAKTMLKKRAGRIVNISSVVGQIGNPGQANYAAAKGGVIAMTRTMGKEFASRGVTVNAVCPGFIESDMTADLQLDAIKAMIPMARLGKASEVAGLVTYLATDPSADYITGHTFNVDGGIAIG 244
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: D7FQ82_ECTSI (3-ketoacyl-(Acyl-carrier-protein) reductase, 3-oxoacyl-[acyl-carrier-protein] reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ82_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 3.520e-76
Identity = 118/152 (77.63%), Postives = 135/152 (88.82%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            DTL +RMKP+QWQ+VIDLNLSGVFY SQAA KLMLKQR GRI+NI+S+VG IGNPGQANYAAAK GVIGMT SMA+EFAARGVT NAVCPGFIESDMTA+L  + IKKMIP+ RLGK  E+AGMV+F+ T+D+AAY+TG TF VDGG+AIGA
Sbjct:  141 DTLTMRMKPDQWQSVIDLNLSGVFYVSQAACKLMLKQRKGRIINISSIVGLIGNPGQANYAAAKAGVIGMTMSMAREFAARGVTVNAVCPGFIESDMTADLDQDAIKKMIPLGRLGKPDEIAGMVKFIATEDSAAYITGQTFTVDGGMAIGA 292
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A4D9D9L3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9L3_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.190e-74
Identity = 117/152 (76.97%), Postives = 135/152 (88.82%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            D LV+ MKPE WQAVID+NLSGVFY S+AAA +ML+ R GRI+N+ASVVGQIGNPGQANYAAAKGGV+G+T++ AKEFAARGVT NAVCPGFIESDMT +L L+ IKK IP+ RLG+ASEVAGMVRFL  D AAAY+TGH+FDVDGGIAIG+
Sbjct:  141 DGLVMTMKPEAWQAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVGQIGNPGQANYAAAKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEKLDLDGIKKAIPLGRLGRASEVAGMVRFLAVDPAAAYITGHSFDVDGGIAIGS 292
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A1X6PF44_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PF44_PORUM)

HSP 1 Score: 233 bits (595), Expect = 7.670e-74
Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            DTL++RMK  QWQ VIDLNL+GVF C+QAAAKLM+K R+GRIVNIASVVGQIGNPGQ NYAAAKGGV+G+T + AKE A+RGVT NAV PGFI SDMTAELPL+ IK MIPM RLG+A+EVAGMV FL TD AAAYVTGHTF+VDGGIAIGA
Sbjct:  204 DTLLMRMKQAQWQEVIDLNLTGVFLCTQAAAKLMIKARAGRIVNIASVVGQIGNPGQVNYAAAKGGVLGLTMATAKEVASRGVTVNAVAPGFIASDMTAELPLDKIKAMIPMGRLGEAAEVAGMVTFLATDPAAAYVTGHTFNVDGGIAIGA 355
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: W7TF53_9STRA (3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF53_9STRA)

HSP 1 Score: 233 bits (594), Expect = 4.470e-73
Identity = 117/151 (77.48%), Postives = 134/151 (88.74%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIG 453
            D LV+ MKPE WQAVID+NLSGVFY S+AAA +ML+ R GRI+N+ASVVGQIGNPGQANYAAAKGGV+G+T++ AKEFAARGVT NAVCPGFIESDMT +L L+ IKK IP+ RLG+ASEVAGMVRFL  D AAAY+TGH+FDVDGGIAIG
Sbjct:  166 DGLVMTMKPEAWQAVIDINLSGVFYASKAAASVMLRARRGRIINMASVVGQIGNPGQANYAAAKGGVLGLTKANAKEFAARGVTVNAVCPGFIESDMTEKLDLDGIKKAIPLGRLGRASEVAGMVRFLAVDPAAAYITGHSFDVDGGIAIG 316
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A7S0I0W7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I0W7_9CRYP)

HSP 1 Score: 227 bits (579), Expect = 1.600e-72
Identity = 119/155 (76.77%), Postives = 133/155 (85.81%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELP---LEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            DTLV+RMK E W++VID+NL GVF CSQAAAK+MLK+R+GRI+NI+SVVGQIGNPGQANYAAAKGGVIGMT S AKEFA RGVT N VCPGFIESDMTAEL    +E++KKMIP+ RLG ASEVAGMV FL  D A  YVTGH F+VDGGIAIGA
Sbjct:  117 DTLVMRMKFEDWKSVIDVNLGGVFLCSQAAAKVMLKKRAGRIINISSVVGQIGNPGQANYAAAKGGVIGMTMSNAKEFAGRGVTVNCVCPGFIESDMTAELNAEYMEEVKKMIPLGRLGLASEVAGMVAFLAMDPACNYVTGHCFNVDGGIAIGA 271
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A1Z5KJI2_FISSO (3-oxoacyl-[acyl-carrier protein] reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJI2_FISSO)

HSP 1 Score: 225 bits (573), Expect = 2.570e-71
Identity = 115/155 (74.19%), Postives = 132/155 (85.16%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELP---LEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            DTLV+RMKPEQWQAVID NLSGVFYC+QA  KL  K+R+GRI+N++SVVGQIGNPGQANYAAAKGGV+ MT++ AKEFAARGVT NA+CPGFIESDMT+ L    LE++ K IP+ RLGK  EVAGM RFL  D AA Y+TGHTF+VDGGIAIGA
Sbjct:  139 DTLVMRMKPEQWQAVIDTNLSGVFYCTQAFFKLAAKKRTGRIINMSSVVGQIGNPGQANYAAAKGGVLAMTKANAKEFAARGVTVNAICPGFIESDMTSVLSEEYLEEVSKGIPLKRLGKPEEVAGMTRFLALDPAADYITGHTFNVDGGIAIGA 293
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: B7G1R8_PHATC (3-oxoacyl-[acyl-carrier protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1R8_PHATC)

HSP 1 Score: 223 bits (567), Expect = 6.030e-71
Identity = 114/154 (74.03%), Postives = 131/154 (85.06%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELP---LEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIG 453
            DTLV+RMKP+QWQ VID+NLSGVFYCSQA  K+  K+R+GRI+NI+SVVGQIGNPGQANYAAAKGGVIGMT S AKEFAARG+T NA+CPG+IESDMTA L    LE + ++IP+ RLGK  EVAGM RFL  D AA Y+TGHTF+VDGGIAIG
Sbjct:   99 DTLVMRMKPQQWQDVIDINLSGVFYCSQAFFKVASKKRTGRIINISSVVGQIGNPGQANYAAAKGGVIGMTYSNAKEFAARGITVNAICPGYIESDMTAVLDEAYLEKVAEIIPLKRLGKPEEVAGMARFLALDPAADYITGHTFNVDGGIAIG 252
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A2V3ICR5_9FLOR (3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICR5_9FLOR)

HSP 1 Score: 223 bits (569), Expect = 1.410e-70
Identity = 113/152 (74.34%), Postives = 129/152 (84.87%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            DTL+LRMK +QWQ VIDLNL+GVF C+QAAAKLMLKQRSGRIVNI SVVG IGNPGQ NY AAK GVIG+T S AKE A+RG+T NAV PGFI SDMTA LP++DIKKMIPM R G+  EVAG+VR+L  D ++AY+TGHTF VDGGIAIG+
Sbjct:  152 DTLMLRMKQDQWQDVIDLNLTGVFLCTQAAAKLMLKQRSGRIVNITSVVGLIGNPGQVNYGAAKAGVIGLTMSAAKECASRGITVNAVAPGFINSDMTANLPVDDIKKMIPMNRFGEPEEVAGLVRYLALDPSSAYITGHTFSVDGGIAIGS 303
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BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Match: A0A7S2B1Y0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1Y0_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.520e-69
Identity = 115/156 (73.72%), Postives = 134/156 (85.90%), Query Frame = 1 
Query:    1 DTLVLRMKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPGQANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAEL---PL-EDIKKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA 456
            DTLV+RMK   + AVI+ NL GVF C++AA K+M K+R+GRI+NIASVVGQIGNPGQANYAAAKGGV+GMT++ AKEFA+RGVT NAVCPGFIESDMT EL   P+ E I+ MIP++RLGK SEVAG+VRFL TDDAAAY TGH F+VDGGIAIGA
Sbjct:   94 DTLVMRMKKGDFDAVINTNLGGVFLCTKAAFKIMAKKRTGRIINIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFASRGVTVNAVCPGFIESDMTNELMDGPMGEQIRAMIPLSRLGKTSEVAGLVRFLATDDAAAYCTGHEFNVDGGIAIGA 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXE5_9STRA1.780e-8082.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQ82_ECTSI3.520e-7677.633-ketoacyl-(Acyl-carrier-protein) reductase, 3-oxo... [more]
A0A4D9D9L3_9STRA1.190e-7476.97Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1X6PF44_PORUM7.670e-7478.95Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
W7TF53_9STRA4.470e-7377.483-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax... [more]
A0A7S0I0W7_9CRYP1.600e-7276.77Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A1Z5KJI2_FISSO2.570e-7174.193-oxoacyl-[acyl-carrier protein] reductase n=2 Tax... [more]
B7G1R8_PHATC6.030e-7174.033-oxoacyl-[acyl-carrier protein n=2 Tax=Phaeodacty... [more]
A0A2V3ICR5_9FLOR1.410e-7074.343-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax... [more]
A0A7S2B1Y0_9STRA3.520e-6973.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53443contigP-wetherbeei_contig53443:2..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ82
PFAMsadh_short,adh_short_C2
Model size459
Max annot lvl2759|Eukaryota
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0031967,GO:0031975,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0055114
Exons1
Evalue6.93e-74
EggNOG OGsCOG1028@1|root,KOG1200@2759|Eukaryota
Ec32 ortholog description3-ketoacyl-(acyl-carrier-protein) reductase, 3-oxoacyl-[acyl-carrier-protein] reductase.
Ec32 orthologEc-01_007100.1
EC1.1.1.100
Description3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity
Cds size441
COG categoryIQ
BiGG ReactioniRC1080.CRv4_Au5_s3_g10590_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.3286297-UTR-P-wetherbeei_contig53443:1..191683186799.3286297-UTR-P-wetherbeei_contig53443:1..19Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53443 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186799.3463404-CDS-P-wetherbeei_contig53443:19..4601683186799.3463404-CDS-P-wetherbeei_contig53443:19..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53443 20..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53443.1.1prot_P-wetherbeei_contig53443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53443 20..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53443.1.1

>prot_P-wetherbeei_contig53443.1.1 ID=prot_P-wetherbeei_contig53443.1.1|Name=mRNA_P-wetherbeei_contig53443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MKPEQWQAVIDLNLSGVFYCSQAAAKLMLKQRSGRIVNIASVVGQIGNPG
QANYAAAKGGVIGMTRSMAKEFAARGVTCNAVCPGFIESDMTAELPLEDI
KKMIPMARLGKASEVAGMVRFLGTDDAAAYVTGHTFDVDGGIAIGA*
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mRNA from alignment at P-wetherbeei_contig53443:2..460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53443.1.1 ID=mRNA_P-wetherbeei_contig53443.1.1|Name=mRNA_P-wetherbeei_contig53443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig53443:2..460+ (Phaeothamnion wetherbeei SAG_119_79)
GACACGCTGGTGCTGCGCATGAAGCCCGAGCAGTGGCAGGCGGTCATCGA
CTTGAACCTGTCGGGCGTCTTCTACTGCAGTCAGGCCGCCGCCAAGCTTA
TGCTCAAGCAGCGCTCTGGCCGAATCGTCAACATCGCCTCGGTCGTCGGC
CAGATCGGCAACCCGGGGCAGGCGAACTACGCGGCGGCCAAAGGCGGCGT
CATCGGCATGACGCGGAGCATGGCGAAAGAGTTCGCGGCGCGTGGCGTCA
CCTGCAACGCCGTCTGCCCCGGCTTCATCGAGTCGGACATGACGGCGGAG
CTGCCGCTGGAGGATATCAAAAAGATGATCCCGATGGCGCGCCTCGGCAA
GGCCTCCGAGGTCGCCGGCATGGTGCGGTTCCTCGGGACGGACGACGCCG
CGGCGTATGTCACGGGGCACACCTTCGACGTTGACGGCGGCATCGCCATC
GGAGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53443:2..460+

>mRNA_P-wetherbeei_contig53443.1.1 ID=mRNA_P-wetherbeei_contig53443.1.1|Name=mRNA_P-wetherbeei_contig53443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig53443:2..460+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCCCGAGCAGTGGCAGGCGGTCATCGACTTGAACCTGTCGGGCGT
CTTCTACTGCAGTCAGGCCGCCGCCAAGCTTATGCTCAAGCAGCGCTCTG
GCCGAATCGTCAACATCGCCTCGGTCGTCGGCCAGATCGGCAACCCGGGG
CAGGCGAACTACGCGGCGGCCAAAGGCGGCGTCATCGGCATGACGCGGAG
CATGGCGAAAGAGTTCGCGGCGCGTGGCGTCACCTGCAACGCCGTCTGCC
CCGGCTTCATCGAGTCGGACATGACGGCGGAGCTGCCGCTGGAGGATATC
AAAAAGATGATCCCGATGGCGCGCCTCGGCAAGGCCTCCGAGGTCGCCGG
CATGGTGCGGTTCCTCGGGACGGACGACGCCGCGGCGTATGTCACGGGGC
ACACCTTCGACGTTGACGGCGGCATCGCCATCGGAGCCTGA
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