mRNA_P-wetherbeei_contig53400.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig53400.1.1
Unique Name	mRNA_P-wetherbeei_contig53400.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: A0A401U2K1_CHIPU (Uncharacterized protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401U2K1_CHIPU)

HSP 1 Score: 175 bits (443), Expect = 4.800e-55
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDVTSRIERALN+AIG+AE+PGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHP AT AAG ALELLHCASLVHDDLPCFDAAETRR
Sbjct:    1 MDVTSRIERALNEAIGQAELPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPAATNAAGAALELLHCASLVHDDLPCFDAAETRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: A0A2U8PY68_9BRAD (Polyprenyl synthetase family protein n=10 Tax=Bradyrhizobium TaxID=374 RepID=A0A2U8PY68_9BRAD)

HSP 1 Score: 173 bits (438), Expect = 4.920e-52
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDVTSRIERALN+AI +AE+PGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHP AT+AAG ALELLHCASLVHDDLPCFDAAETRR
Sbjct:    1 MDVTSRIERALNEAIDQAELPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPAATDAAGAALELLHCASLVHDDLPCFDAAETRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: UPI00199AC26E (Polyprenyl synthetase family protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI00199AC26E)

HSP 1 Score: 169 bits (427), Expect = 2.250e-50
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDV SRIERALN+A+  AEVPGCPPRLAAAMRYAVFP+GAR+RPRLCHSV+AACGEDHP ATEAAG ALELLHCASLVHDDLPCFDAA+TRR
Sbjct:    1 MDVASRIERALNEAVASAEVPGCPPRLAAAMRYAVFPKGARIRPRLCHSVSAACGEDHPTATEAAGAALELLHCASLVHDDLPCFDAADTRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: UPI0018068CAC (Polyprenyl synthetase family protein n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI0018068CAC)

HSP 1 Score: 161 bits (408), Expect = 1.650e-47
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDVT+RIERAL DA+ +A+V GCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGED+P ATEAAG ALEL+HCASLVHDDLPCFD A TRR
Sbjct:    1 MDVTNRIERALTDALNQADVTGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDNPAATEAAGAALELMHCASLVHDDLPCFDGAATRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: A0A7W7Z8B2_9BRAD (Geranylgeranyl diphosphate synthase type II n=4 Tax=Rhodopseudomonas TaxID=1073 RepID=A0A7W7Z8B2_9BRAD)

HSP 1 Score: 156 bits (395), Expect = 1.490e-45
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDVT+RIE+AL DAIG A V GCPPRLA AMRYAVFPRGARVRPRLCHSVAAACGED+P AT AAG ALEL+HCASLVHDDLPCFD A TRR
Sbjct:    1 MDVTNRIEQALTDAIGLAAVTGCPPRLAEAMRYAVFPRGARVRPRLCHSVAAACGEDNPAATAAAGAALELMHCASLVHDDLPCFDGAATRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: A0A4Q5PLX8_9BRAD (Geranylgeranyl pyrophosphate synthase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4Q5PLX8_9BRAD)

HSP 1 Score: 156 bits (395), Expect = 1.490e-45
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDV SRIE+ALN+A+ RA+V GCPPRLAAAMRYAVFP+GAR+RPRLCHSVAAACGEDHP A +AAG ALELLH ASLVHDDLPCFDAA+ RR
Sbjct:    1 MDVASRIEQALNNALSRADVSGCPPRLAAAMRYAVFPKGARIRPRLCHSVAAACGEDHPAAADAAGAALELLHSASLVHDDLPCFDAADIRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: UPI001163975D (polyprenyl synthetase family protein n=2 Tax=unclassified Tardiphaga TaxID=2631404 RepID=UPI001163975D)

HSP 1 Score: 154 bits (389), Expect = 1.190e-44
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDV SRIE+ALN AI R+EV  CPPRLAAAMRYAVFP+GAR+RPRLCHSVAAACGED+  AT+A G ALELLHCASLVHDDLPCFDAA+TRR
Sbjct:    1 MDVASRIEQALNTAIARSEVAECPPRLAAAMRYAVFPKGARIRPRLCHSVAAACGEDNAAATDATGAALELLHCASLVHDDLPCFDAADTRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: Q132K9_RHOPS (Farnesyl-diphosphate synthase n=3 Tax=Rhodopseudomonas TaxID=1073 RepID=Q132K9_RHOPS)

HSP 1 Score: 152 bits (384), Expect = 6.750e-44
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDVT+RIERAL +A+ +A++ GCPPRLAAAMR AVFPRGARVRPRLCHSVA ACGED+P ATEAAG ALEL+HCASLVHDDLPCFD A+ RR
Sbjct:    1 MDVTNRIERALTEALSQADLAGCPPRLAAAMRSAVFPRGARVRPRLCHSVALACGEDNPAATEAAGAALELMHCASLVHDDLPCFDGADIRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: Q6N9M1_RHOPA (Geranylgeranyl pyrophosphate synthase n=15 Tax=Rhodopseudomonas TaxID=1073 RepID=Q6N9M1_RHOPA)

HSP 1 Score: 149 bits (375), Expect = 1.520e-42
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDVT+RIERAL +A+ +A++ GCPPRLAAAMR AVFPRGARVRPRLCHSVA ACGED+P  TEAAG ALEL+HCASL+HDDLPCFD A+ RR
Sbjct:    1 MDVTNRIERALTEALNQADMAGCPPRLAAAMRSAVFPRGARVRPRLCHSVALACGEDNPGITEAAGAALELMHCASLIHDDLPCFDGADLRR 92

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BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Match: UPI001BA7C44F (polyprenyl synthetase family protein n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA7C44F)

HSP 1 Score: 147 bits (370), Expect = 8.800e-42
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 1

Query:    1 MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSVAAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR 276
            MDV +RIE+ALN AIG A+ PGCPPRLAAAMR AVFP+GARVRPRLCH+VA+ACG+D P AT+AAG A+ELLHCASLVHDDLPCFD A  RR
Sbjct:    1 MDVATRIEKALNHAIGLADQPGCPPRLAAAMRAAVFPKGARVRPRLCHAVASACGDDEPGATDAAGAAIELLHCASLVHDDLPCFDDAALRR 92

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig53400.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A401U2K1_CHIPU	4.800e-55	93.48	Uncharacterized protein (Fragment) n=1 Tax=Chilosc...	[more]
A0A2U8PY68_9BRAD	4.920e-52	92.39	Polyprenyl synthetase family protein n=10 Tax=Brad...	[more]
UPI00199AC26E	2.250e-50	88.04	Polyprenyl synthetase family protein n=1 Tax=Tardi...	[more]
UPI0018068CAC	1.650e-47	85.87	Polyprenyl synthetase family protein n=1 Tax=Rhodo...	[more]
A0A7W7Z8B2_9BRAD	1.490e-45	84.78	Geranylgeranyl diphosphate synthase type II n=4 Ta...	[more]
A0A4Q5PLX8_9BRAD	1.490e-45	82.61	Geranylgeranyl pyrophosphate synthase n=1 Tax=Brad...	[more]
UPI001163975D	1.190e-44	82.61	polyprenyl synthetase family protein n=2 Tax=uncla...	[more]
Q132K9_RHOPS	6.750e-44	80.43	Farnesyl-diphosphate synthase n=3 Tax=Rhodopseudom...	[more]
Q6N9M1_RHOPA	1.520e-42	78.26	Geranylgeranyl pyrophosphate synthase n=15 Tax=Rho...	[more]
UPI001BA7C44F	8.800e-42	78.26	polyprenyl synthetase family protein n=1 Tax=Brady...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig53400	contig	P-wetherbeei_contig53400:262..537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	335659.S23_19150
Preferred name	crtE
PFAMs	polyprenyl_synt
Model size	276
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00279
KEGG ko	ko:K13789
KEGG Reaction	R01658,R02003,R02061
KEGG Pathway	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG Module	M00364,M00366
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0071704,GO:0090407,GO:1901576
Exons	1
Evalue	6.21e-55
EggNOG OGs	COG0142@1\|root,COG0142@2\|Bacteria,1MWNG@1224\|Proteobacteria,2TV46@28211\|Alphaproteobacteria,3JQND@41294\|Bradyrhizobiaceae
EC	2.5.1.1,2.5.1.10,2.5.1.29
Description	Belongs to the FPP GGPP synthase family
Cds size	276
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186798.9246397-CDS-P-wetherbeei_contig53400:261..537	1683186798.9246397-CDS-P-wetherbeei_contig53400:261..537	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig53400 262..537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig53400.1.1	prot_P-wetherbeei_contig53400.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig53400 262..537 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig53400:262..537+
coding sequence from alignment at P-wetherbeei_contig53400:262..537+

protein sequence of mRNA_P-wetherbeei_contig53400.1.1

>prot_P-wetherbeei_contig53400.1.1 ID=prot_P-wetherbeei_contig53400.1.1|Name=mRNA_P-wetherbeei_contig53400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MDVTSRIERALNDAIGRAEVPGCPPRLAAAMRYAVFPRGARVRPRLCHSV
AAACGEDHPLATEAAGVALELLHCASLVHDDLPCFDAAETRR

mRNA from alignment at P-wetherbeei_contig53400:262..537+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig53400.1.1 ID=mRNA_P-wetherbeei_contig53400.1.1|Name=mRNA_P-wetherbeei_contig53400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig53400:262..537+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTCACCAGCCGGATCGAGCGGGCCCTCAACGATGCGATCGGCCG
GGCGGAGGTTCCAGGCTGTCCGCCGCGGCTCGCGGCGGCGATGCGTTATG
CGGTGTTTCCCCGAGGCGCCCGGGTCCGGCCGAGGCTCTGTCACAGCGTC
GCGGCGGCCTGTGGGGAAGACCATCCGCTGGCAACGGAGGCGGCGGGCGT
AGCGCTTGAACTGCTGCATTGCGCTTCGCTCGTGCACGACGATCTGCCTT
GTTTCGACGCGGCGGAGACGCGGCGC

Coding sequence (CDS) from alignment at P-wetherbeei_contig53400:262..537+

>mRNA_P-wetherbeei_contig53400.1.1 ID=mRNA_P-wetherbeei_contig53400.1.1|Name=mRNA_P-wetherbeei_contig53400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig53400:262..537+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTCACCAGCCGGATCGAGCGGGCCCTCAACGATGCGATCGGCCG
GGCGGAGGTTCCAGGCTGTCCGCCGCGGCTCGCGGCGGCGATGCGTTATG
CGGTGTTTCCCCGAGGCGCCCGGGTCCGGCCGAGGCTCTGTCACAGCGTC
GCGGCGGCCTGTGGGGAAGACCATCCGCTGGCAACGGAGGCGGCGGGCGT
AGCGCTTGAACTGCTGCATTGCGCTTCGCTCGTGCACGACGATCTGCCTT
GTTTCGACGCGGCGGAGACGCGGCGC