mRNA_P-wetherbeei_contig534.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig534.2.1
Unique NamemRNA_P-wetherbeei_contig534.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: D7FYK4_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.890e-45
Identity = 82/166 (49.40%), Postives = 109/166 (65.66%), Query Frame = 1
Query:  202 RSAEENLVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQLCAKRIEDLREARERDARRSVSCRIIISEPCCRTGGTGGAAGSAGLPIDW----RERFGTGVFTLDEDF 687
            R     +V+LNVGG +++T+R T+  AGN ML +MF G F   TD +GFAF+DR G RF HVLN+LRC SLP+F + WRYE I EEADF+++E LR+LC +++E L EA+ ++  +S +CR+ I E     G   G AG            RER+GTG FTLDEDF
Sbjct:   26 RQGSRGIVRLNVGGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLEALEEAKRKEKAKSFACRVTIVE-----GAADGTAGQGXXXXXXXXTARERYGTGYFTLDEDF 186          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: A0A836CP50_9STRA (BTB/POZ protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP50_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.940e-40
Identity = 87/168 (51.79%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  226 KLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLT-DADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQLCAKRIEDLREARERDARR--SVSCRIIISE-------PCCRTGGTG----GAAGSAGLPIDWRERFGTGVFTLDEDF 687
            +LNVGG R+ T+ +T+   GNSML AMFS      T DA GF F+DR G RF HVLN+LRCGSLP+F + WRYEAI EEADFF++E L+QLCA R+E+  +A+E++  R  S+SCR+ I E       P      TG    G     G+P   RE FGT  FTLDEDF
Sbjct:    9 QLNVGGRRFCTSIETIQGHGNSMLAAMFSNPLYKKTEDAQGFVFIDRDGDRFPHVLNFLRCGSLPSFDEAWRYEAIMEEADFFAVEELKQLCAARVEESAQAKEKEEERAKSMSCRVTIVEAPKPLAAPLAVAALTGELDPGPQWGTGVPP--REAFGTFEFTLDEDF 174          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: A0A7S2H0D8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0D8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.770e-22
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  223 VKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQLCAKRIEDLR----EARERDARRSVS-CRIII 573
            ++LNVGG +Y T+R TL    +SML  MFSG++ T+ + +G+AF+DR G+RF H+LNYLR  ++P F D WR++ + EEADFF L  LR L   +I  ++    E R  DA+ S   C+++I
Sbjct:   30 IRLNVGGVKYHTSRGTLMQCPSSMLARMFSGTW-TVHEDEGYAFIDRDGTRFRHILNYLRNRTVPAFEDEWRFQEVLEEADFFGLPDLRDLVEAKISQMKAQRAEERAEDAKSSGQVCQVMI 150          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: A0A1Q9C8A2_SYMMI (BTB/POZ domain-containing protein KCTD7 n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9C8A2_SYMMI)

HSP 1 Score: 84.0 bits (206), Expect = 8.700e-15
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  220 LVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLP-NFADLWRYEAIAEEADFFSLEAL 486
            LV LNVGG + +TT  TL    +SML  MFSG    L DADG  F+DR G +FHH+LNYLR G+LP   + + R E +  EADF+ L+AL
Sbjct:   43 LVHLNVGGRKLMTTLATLQMDSDSMLGLMFSGKLPVLRDADGCFFIDRDGRQFHHILNYLRDGTLPIGLSRVDRLELL-READFYGLKAL 131          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: A0A812P059_9DINO (FIP2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812P059_9DINO)

HSP 1 Score: 81.6 bits (200), Expect = 3.540e-14
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  220 LVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLP-NFADLWRYEAIAEEADFFSLEAL 486
            +V LN+GG R  TT  TL    +SML  MFSG    L DADG  F+DR G +FHH+LNYLR G+LP   + + R E +  EADF+ L AL
Sbjct:   16 IVHLNIGGQRLTTTLATLRAEPDSMLGLMFSGKHPVLRDADGCYFIDRDGRQFHHILNYLRDGTLPIGLSRVDRLELL-READFYGLRAL 104          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: A0A7S3Y147_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y147_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 1.250e-13
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  220 LVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPN-FADLWRYEAIAEEADFFSLEALRQLCAKRIE 513
            +V+LNVGG+++ T++ TL    +SML  MFSG    + D DG  F+DR GS F H+LNYLR GSLP    D  +   +  EA +F L+ LR++  + I+
Sbjct:   24 IVRLNVGGSKFTTSKTTLTAQPDSMLSRMFSGKHPIIVDGDGSYFIDRDGSCFQHILNYLRDGSLPPPEMDTAQKVILEREARYFLLDELREVLEEEIQ 122          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: UPI001CF97194 (BTB/POZ domain-containing protein KCTD11 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF97194)

HSP 1 Score: 80.1 bits (196), Expect = 2.270e-13
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  199 DRSAEENLVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQ 492
            D++  ++++ LNVGG+ Y TT +TL    NSML  MF G   T+TD+ G  F+DR G  F ++LNYLR   L    D    E +  EADF+ +++L Q
Sbjct:    4 DQATIDSVITLNVGGSLYTTTLETLTKYPNSMLGVMFKGQLPTMTDSHGRYFIDRDGKAFRYILNYLRTSFLDLPEDYSETELLKREADFYQIQSLLQ 101          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: R7U610_CAPTE (BTB domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U610_CAPTE)

HSP 1 Score: 79.3 bits (194), Expect = 3.150e-13
Identity = 55/137 (40.15%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  193 CDDRSAEENLVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQLCAKRIEDLREARERDARRSVSCRIIISEPCCRTGGT 603
            CDD      L++LNVGG  Y TT+ TL    NSML AMF+GS  T  D  G  F+DR G  F +VLN+LR   L    +    + ++ EADFF +E L Q     I + ++ R+  A R+  C + + E   RTG T
Sbjct:   24 CDD------LLRLNVGGVSYTTTKATLSRFPNSMLGAMFNGSMPTTRDDSGSYFIDRDGHLFGYVLNFLRSSQLALPDNFSLIDQLSLEADFFQVEPLIQA----INEYKKRRQHPAART-GCLLEVIE--VRTGST 147          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: UPI001E1DB399 (uncharacterized protein LOC123536969 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB399)

HSP 1 Score: 78.6 bits (192), Expect = 6.220e-13
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  208 AEENLVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEAL 486
            A   +VKLNVGG  Y TT+ TL    +SML AMF+GS +T  D  G  F+DR G  F H+LNYLR   L    D    + ++ EADF+ + +L
Sbjct:    2 ASSEIVKLNVGGVIYTTTKSTLCKFPHSMLGAMFNGSLSTSLDECGCVFIDRDGELFKHILNYLRSSRLALPCDFKDLDQLSVEADFYQITSL 94          
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Match: A0A3Q2Y251_HIPCM (Potassium channel tetramerization domain containing 6 n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2Y251_HIPCM)

HSP 1 Score: 77.4 bits (189), Expect = 1.220e-12
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  223 VKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDRCGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQ 492
            V LNVGG  Y T+  TL    +SML AMF G   TL DA G  F+DR G+ FH++LN+LR   L    D    E + +EADF+ LE L Q
Sbjct:    5 VTLNVGGCLYSTSLTTLRRYPDSMLGAMFRGDVPTLRDASGNYFIDRDGTLFHYILNFLRSSELTLPCDFKEVELLRKEADFYQLEPLLQ 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig534.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYK4_ECTSI2.890e-4549.40BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP50_9STRA5.940e-4051.79BTB/POZ protein n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2H0D8_9STRA3.770e-2245.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Q9C8A2_SYMMI8.700e-1552.22BTB/POZ domain-containing protein KCTD7 n=5 Tax=Sy... [more]
A0A812P059_9DINO3.540e-1451.11FIP2 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S3Y147_HETAK1.250e-1343.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001CF971942.270e-1341.84BTB/POZ domain-containing protein KCTD11 n=1 Tax=P... [more]
R7U610_CAPTE3.150e-1340.15BTB domain-containing protein n=1 Tax=Capitella te... [more]
UPI001E1DB3996.220e-1345.16uncharacterized protein LOC123536969 n=1 Tax=Merce... [more]
A0A3Q2Y251_HIPCM1.220e-1247.78Potassium channel tetramerization domain containin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig534contigP-wetherbeei_contig534:1143..2672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYK4
PFAMsBTB_2
Model size1178
Max annot lvl2759|Eukaryota
KEGG koko:K21919,ko:K21922
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.16e-48
EggNOG OGsKOG2716@1|root,KOG2716@2759|Eukaryota
Ec32 ortholog descriptionBTB/POZ-like
Ec32 orthologEc-02_004350.1
Descriptionprotein homooligomerization
Cds size627
COG categoryS
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.6892118-UTR-P-wetherbeei_contig534:1142..12051683186798.6892118-UTR-P-wetherbeei_contig534:1142..1205Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig534 1143..1205 +
1683186798.734894-UTR-P-wetherbeei_contig534:2184..26721683186798.734894-UTR-P-wetherbeei_contig534:2184..2672Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig534 2185..2672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.701363-CDS-P-wetherbeei_contig534:1205..13811683186798.701363-CDS-P-wetherbeei_contig534:1205..1381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig534 1206..1381 +
1683186798.7135603-CDS-P-wetherbeei_contig534:1522..16171683186798.7135603-CDS-P-wetherbeei_contig534:1522..1617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig534 1523..1617 +
1683186798.7261994-CDS-P-wetherbeei_contig534:1828..21841683186798.7261994-CDS-P-wetherbeei_contig534:1828..2184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig534 1829..2184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig534.2.1prot_P-wetherbeei_contig534.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig534 1206..2184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig534.2.1

>prot_P-wetherbeei_contig534.2.1 ID=prot_P-wetherbeei_contig534.2.1|Name=mRNA_P-wetherbeei_contig534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
MTAQQLLPAREKGQHSCPKAAMKVVVANIQESKDVEKSAEAPRCDDRSAE
ENLVKLNVGGTRYVTTRQTLDNAGNSMLLAMFSGSFATLTDADGFAFVDR
CGSRFHHVLNYLRCGSLPNFADLWRYEAIAEEADFFSLEALRQLCAKRIE
DLREARERDARRSVSCRIIISEPCCRTGGTGGAAGSAGLPIDWRERFGTG
VFTLDEDF*
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mRNA from alignment at P-wetherbeei_contig534:1143..2672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig534.2.1 ID=mRNA_P-wetherbeei_contig534.2.1|Name=mRNA_P-wetherbeei_contig534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig534:1143..2672+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTCCCCGCCTAATCAAGCGCAGAGAAGATAGCGAAGGTTTGCTCTTCG CGGTGCGGCGGCGATGACAGCGCAACAACTACTGCCGGCGAGGGAGAAAG GACAGCATTCCTGCCCGAAAGCTGCAATGAAGGTCGTCGTAGCAAACATT CAAGAATCAAAAGACGTCGAAAAGAGCGCAGAAGCGCCACGATGCGACGA CCGCTCCGCAGAAGAAAACCTCGTGAAGCTAAACGTCGGGTAAGGGAAGA GCTAGCTCCTCTCGTTTTCGCTAGGCGCAAGCCTGTCCTTTTCCGGCCTC CTTGTCGACTCTTCTTCGGAGAACGTACTAACCTTGAAGATCCCGCTCCC AACGACTCTTCGTCTCTTTTATTGTTCCAGCGGCACGCGATATGTGACTA CGAGGCAGACTCTGGACAACGCCGGCAACAGCATGCTCCTTGCCATGTTC AGTGGATCGTTTGCGACATTGACAGGTGATCTGTCTGGTTTTGGTGCTGA GAAGTAGAGCTTTGATACATCCCATCCTCTTGTGTAAAGTCTCATCGGTT CTAATTCCCATTTTCCTACCACAGCCTGCGCTTCATCTTTATGTCAAGTT CGAAAGCATATGCCGCATCTTTATGGCCCCGTCGCATCCGGTCCGATCTG GCCCTGCCCTTCCCTCGCGTCCCTCCCCGCCGTCAGACGCGGACGGCTTC GCCTTTGTCGACCGCTGCGGCTCCCGCTTCCACCACGTGCTTAACTACCT CCGCTGCGGCAGCCTGCCGAACTTCGCCGACTTGTGGCGGTATGAAGCAA TCGCAGAGGAGGCAGACTTTTTTTCTCTCGAAGCCCTCCGGCAGCTCTGC GCGAAGCGCATCGAGGATCTGCGCGAGGCGCGGGAGCGGGACGCCCGGCG GAGCGTCAGCTGCCGCATCATCATCAGCGAGCCGTGCTGTAGGACGGGGG GGACCGGCGGGGCGGCGGGTAGCGCCGGGCTGCCGATCGACTGGCGGGAG CGCTTCGGCACCGGAGTATTCACGCTCGACGAGGACTTCTAGGCGGCAGG TCGACCGGCTTGGCGCTCTTGGCGGCGCCCCGCCGCAGCGGAAAGTAGTA GCCGCTGAACGTTGCTGGAGCAAGCGGCACATATTACGGTGACAGCGTCG ACGCTTTTGCGGCGCGGCCGCAAAGGGCGACGTTGAGATAGGCATTGGTG CCGTTTCTAGAAACGGCATGGTCCATAGGATGACACTGAGGAAGTTGTCC CACTCCCTTGTTGGAGGAGAAAACGTCCCAGTGAGAGAGAGACGTTCAGC AGCCAGGCGACGCCTGACCTCCTTTGGGCATACCGCAGGTGGTTGTCCGC CTGGTGATAGCACGCTCGGAATTCGCTTGGCACGATTTGGCACCGTTGCC GTCAGTCACATTGGAAGACGCACTGGGCGGGGCAGGCGCGGCAAGGAGCC TAGCCCGAAACCCGCCTTCGTGGCGGCCCGCCTTATGATTAGTATACGCA AGTGCGAGAAAGACACGTGCTCCTGTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig534:1143..2672+

>mRNA_P-wetherbeei_contig534.2.1 ID=mRNA_P-wetherbeei_contig534.2.1|Name=mRNA_P-wetherbeei_contig534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig534:1143..2672+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGCGCAACAACTACTGCCGGCGAGGGAGAAAGGACAGCATTCCTG
CCCGAAAGCTGCAATGAAGGTCGTCGTAGCAAACATTCAAGAATCAAAAG
ACGTCGAAAAGAGCGCAGAAGCGCCACGATGCGACGACCGCTCCGCAGAA
GAAAACCTCGTGAAGCTAAACGTCGGCGGCACGCGATATGTGACTACGAG
GCAGACTCTGGACAACGCCGGCAACAGCATGCTCCTTGCCATGTTCAGTG
GATCGTTTGCGACATTGACAGACGCGGACGGCTTCGCCTTTGTCGACCGC
TGCGGCTCCCGCTTCCACCACGTGCTTAACTACCTCCGCTGCGGCAGCCT
GCCGAACTTCGCCGACTTGTGGCGGTATGAAGCAATCGCAGAGGAGGCAG
ACTTTTTTTCTCTCGAAGCCCTCCGGCAGCTCTGCGCGAAGCGCATCGAG
GATCTGCGCGAGGCGCGGGAGCGGGACGCCCGGCGGAGCGTCAGCTGCCG
CATCATCATCAGCGAGCCGTGCTGTAGGACGGGGGGGACCGGCGGGGCGG
CGGGTAGCGCCGGGCTGCCGATCGACTGGCGGGAGCGCTTCGGCACCGGA
GTATTCACGCTCGACGAGGACTTCTAG
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