mRNA_P-wetherbeei_contig53331.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53331.1.1
Unique NamemRNA_P-wetherbeei_contig53331.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: A0A0A3Y0M8_BRAJP (Acyltransferase n=124 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0A3Y0M8_BRAJP)

HSP 1 Score: 251 bits (642), Expect = 1.610e-82
Identity = 125/141 (88.65%), Postives = 132/141 (93.62%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRGTPKTISLPRRLICDLMRASMDVPFVSLSR L+IRPLLEARA A  PAGWAAMFVKAFALVARDEP+LRTVYAKWPWP LYELP SVA VAIARV+DGEECV+PQRIAAPE MALAAVDAEIRR KTAP++DVPMFRK+
Sbjct:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRPLNIRPLLEARAGAMAPAGWAAMFVKAFALVARDEPVLRTVYAKWPWPSLYELPNSVASVAIARVQDGEECVMPQRIAAPETMALAAVDAEIRRAKTAPVEDVPMFRKV 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: A0A1Q5S365_9BRAD (Acyltransferase n=1 Tax=Bradyrhizobium sp. NAS80.1 TaxID=1680159 RepID=A0A1Q5S365_9BRAD)

HSP 1 Score: 251 bits (640), Expect = 4.200e-82
Identity = 127/141 (90.07%), Postives = 131/141 (92.91%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRG PK ISLPRRLICDLMRASM VPF+SLSRSL IRPLLEARA A  PAGWAAMFVKAFA+VARDEPILRTVYAKWPWP LYELPKSVA VAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRR KTAP++DVPMFRKI
Sbjct:    1 MRGQPKNISLPRRLICDLMRASMGVPFISLSRSLQIRPLLEARAGAATPAGWAAMFVKAFAIVARDEPILRTVYAKWPWPTLYELPKSVAQVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRAKTAPLEDVPMFRKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: A0A150U809_9BRAD (Acyltransferase n=28 Tax=Bradyrhizobium TaxID=374 RepID=A0A150U809_9BRAD)

HSP 1 Score: 249 bits (635), Expect = 1.860e-81
Identity = 126/141 (89.36%), Postives = 133/141 (94.33%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRGT KTISL RRLICDLM ASM VPFVSLSRSL+IRP+LEARA A  PAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARV+DGEECV+PQRIAAP+AMALAAVDAEIRR KTAP++DVPMFRKI
Sbjct:    1 MRGTSKTISLRRRLICDLMHASMGVPFVSLSRSLNIRPVLEARAGATAPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVDDGEECVIPQRIAAPDAMALAAVDAEIRRAKTAPVEDVPMFRKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: UPI00190E4B60 (acyltransferase n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI00190E4B60)

HSP 1 Score: 245 bits (625), Expect = 6.170e-80
Identity = 121/141 (85.82%), Postives = 131/141 (92.91%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRG  KTISLPRRLICDLM ASMDVPFVSLSRSL+IRPL+EARA    PAGWAA+FVKAFALVA+DEP+LRTVYAKWPWP LYELP+SVA VAIARVEDGEECV+PQRIAAPEAMALAAVDAEIRR KTAP+DD+PMFRK+
Sbjct:    1 MRGKAKTISLPRRLICDLMHASMDVPFVSLSRSLNIRPLIEARAGTIAPAGWAAIFVKAFALVAKDEPVLRTVYAKWPWPTLYELPRSVASVAIARVEDGEECVMPQRIAAPEAMALAAVDAEIRRAKTAPVDDIPMFRKV 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: A0A120HNN3_9BRAD (Acyltransferase n=13 Tax=Bradyrhizobium TaxID=374 RepID=A0A120HNN3_9BRAD)

HSP 1 Score: 244 bits (622), Expect = 1.760e-79
Identity = 123/141 (87.23%), Postives = 131/141 (92.91%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRGTPKTISL RRLICDLM ASM VPFVSLSRSL IR +LEARA A  PAGWAAMFVKAFALVA+DEP+LRTVYAKWPWP LYELPKSVALVAIARV+DGEECV+PQRIAAP+AMALAAVDAEIRR KTAP++DVPMFRKI
Sbjct:    1 MRGTPKTISLRRRLICDLMHASMGVPFVSLSRSLDIRRVLEARAGATTPAGWAAMFVKAFALVAKDEPVLRTVYAKWPWPALYELPKSVALVAIARVDDGEECVIPQRIAAPDAMALAAVDAEIRRAKTAPVEDVPMFRKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: A0A560K5N0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sacchari TaxID=1399419 RepID=A0A560K5N0_9BRAD)

HSP 1 Score: 243 bits (620), Expect = 3.550e-79
Identity = 123/141 (87.23%), Postives = 129/141 (91.49%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSL IR LLEARA A  PAGWAAMFVKAFALVARDEP+LRTVYAKWPWP LYELP+SVALVAIARVEDGEECVLPQRI+AP+ + LA +DAEIRR KTAPI DVPMF KI
Sbjct:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLDIRSLLEARAGALAPAGWAAMFVKAFALVARDEPVLRTVYAKWPWPTLYELPRSVALVAIARVEDGEECVLPQRISAPDTLPLARIDAEIRRAKTAPIADVPMFGKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: A0A2U3PZ57_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A2U3PZ57_9BRAD)

HSP 1 Score: 243 bits (619), Expect = 5.030e-79
Identity = 123/141 (87.23%), Postives = 131/141 (92.91%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRGTPKTIS  RRLICDLM ASM VPFVSLSRSL+IRP+LEARASA  PAGWAA+FVKAFALVARDEPILRTVY KWPWP LYELPKSVA VAIAR+E+GEECVLPQRIAAPEA++LAAVDAEIRRGKTAP+ DVPMFRKI
Sbjct:    1 MRGTPKTISPWRRLICDLMHASMGVPFVSLSRSLYIRPVLEARASATSPAGWAAIFVKAFALVARDEPILRTVYTKWPWPALYELPKSVATVAIARIENGEECVLPQRIAAPEALSLAAVDAEIRRGKTAPVADVPMFRKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: UPI001BA494FC (acyltransferase n=2 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001BA494FC)

HSP 1 Score: 237 bits (605), Expect = 6.740e-77
Identity = 121/141 (85.82%), Postives = 126/141 (89.36%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRG PK ISLPRR+I DLMRASM VPFVSL+R L IRPLLEARA    PAGWAAM VKAFALVARDEPILRTVYAKWPWPMLYELPKSVA VAIAR+EDGEECVLPQRI+APEAM LA VDAEIRR KTAPI+DVPMFRKI
Sbjct:    1 MRGQPKNISLPRRMIFDLMRASMGVPFVSLARPLQIRPLLEARAGTAAPAGWAAMIVKAFALVARDEPILRTVYAKWPWPMLYELPKSVASVAIARIEDGEECVLPQRISAPEAMPLADVDAEIRRAKTAPIEDVPMFRKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: UPI001FFAC7AE (acyltransferase n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI001FFAC7AE)

HSP 1 Score: 237 bits (605), Expect = 6.740e-77
Identity = 121/141 (85.82%), Postives = 129/141 (91.49%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRG  KTISLPRRLI DLMRAS+ VPFVSLSRSL+IRPLL+ARA A  PAGWAAMFVKAFALVARDEP+LRTVYAKWPWPMLYELPKSVA VAIARVEDGEECVL QRIA PEA+ALA +DAEIRR KTAPID++PMFRKI
Sbjct:    1 MRGKAKTISLPRRLIVDLMRASIGVPFVSLSRSLNIRPLLDARAGAMAPAGWAAMFVKAFALVARDEPLLRTVYAKWPWPMLYELPKSVASVAIARVEDGEECVLLQRIAGPEAIALAEIDAEIRRAKTAPIDEIPMFRKI 141          
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Match: UPI001BADF2C7 (acyltransferase n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI001BADF2C7)

HSP 1 Score: 237 bits (605), Expect = 6.740e-77
Identity = 121/141 (85.82%), Postives = 126/141 (89.36%), Query Frame = 1
Query:    1 MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPAGWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDGEECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI 423
            MRG PK ISLPRRLI DLMRASMDVPFVS SRSL+I PLLEARA A  PAGWAAMF KAFALVARDEPILRTVYAKWPWP  YELP SVA VAIARVE+GEECV+PQRIAAPEAMAL+A+DAEIRR K APIDDVPMFRKI
Sbjct:    1 MRGQPKNISLPRRLIIDLMRASMDVPFVSQSRSLNIGPLLEARAGAAAPAGWAAMFAKAFALVARDEPILRTVYAKWPWPSFYELPNSVASVAIARVENGEECVMPQRIAAPEAMALSAIDAEIRRAKNAPIDDVPMFRKI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53331.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A3Y0M8_BRAJP1.610e-8288.65Acyltransferase n=124 Tax=Alphaproteobacteria TaxI... [more]
A0A1Q5S365_9BRAD4.200e-8290.07Acyltransferase n=1 Tax=Bradyrhizobium sp. NAS80.1... [more]
A0A150U809_9BRAD1.860e-8189.36Acyltransferase n=28 Tax=Bradyrhizobium TaxID=374 ... [more]
UPI00190E4B606.170e-8085.82acyltransferase n=1 Tax=Bradyrhizobium diazoeffici... [more]
A0A120HNN3_9BRAD1.760e-7987.23Acyltransferase n=13 Tax=Bradyrhizobium TaxID=374 ... [more]
A0A560K5N0_9BRAD3.550e-7987.23Uncharacterized protein n=1 Tax=Bradyrhizobium sac... [more]
A0A2U3PZ57_9BRAD5.030e-7987.23Uncharacterized protein n=2 Tax=Bradyrhizobium Tax... [more]
UPI001BA494FC6.740e-7785.82acyltransferase n=2 Tax=Bradyrhizobium diazoeffici... [more]
UPI001FFAC7AE6.740e-7785.82acyltransferase n=4 Tax=Bradyrhizobium TaxID=374 R... [more]
UPI001BADF2C76.740e-7785.82acyltransferase n=1 Tax=Bradyrhizobium manausense ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53331contigP-wetherbeei_contig53331:115..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog335659.S23_25420
Model size423
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-88
EggNOG OGsCOG0508@1|root,COG0508@2|Bacteria,1NBIZ@1224|Proteobacteria,2TR2F@28211|Alphaproteobacteria,3JUSR@41294|Bradyrhizobiaceae
Descriptiondehydrogenase complex catalyzes the overall conversion of
Cds size423
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.2329004-CDS-P-wetherbeei_contig53331:114..5371683186798.2329004-CDS-P-wetherbeei_contig53331:114..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53331 115..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53331.1.1prot_P-wetherbeei_contig53331.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53331 115..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53331.1.1

>prot_P-wetherbeei_contig53331.1.1 ID=prot_P-wetherbeei_contig53331.1.1|Name=mRNA_P-wetherbeei_contig53331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MRGTPKTISLPRRLICDLMRASMDVPFVSLSRSLHIRPLLEARASAREPA
GWAAMFVKAFALVARDEPILRTVYAKWPWPMLYELPKSVALVAIARVEDG
EECVLPQRIAAPEAMALAAVDAEIRRGKTAPIDDVPMFRKI
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mRNA from alignment at P-wetherbeei_contig53331:115..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53331.1.1 ID=mRNA_P-wetherbeei_contig53331.1.1|Name=mRNA_P-wetherbeei_contig53331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig53331:115..537+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGGACACCCAAGACCATTTCGCTGCCGCGCCGCCTGATTTGCGA CCTGATGCGGGCCTCGATGGACGTGCCCTTCGTCTCGTTGTCCCGTTCGC TGCATATTCGCCCCCTGCTGGAGGCCCGCGCCAGCGCAAGGGAGCCCGCT GGCTGGGCCGCGATGTTCGTCAAGGCCTTCGCCCTGGTCGCCAGGGACGA GCCGATCCTGCGCACCGTCTACGCCAAATGGCCCTGGCCGATGCTCTACG AGCTTCCCAAGAGCGTGGCGCTGGTCGCCATTGCCCGGGTCGAGGATGGC GAGGAATGCGTGCTGCCGCAGCGAATCGCCGCCCCCGAGGCCATGGCGCT GGCGGCGGTCGATGCCGAGATCCGGCGCGGCAAGACGGCGCCGATCGACG ACGTGCCGATGTTCCGCAAGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53331:115..537+

>mRNA_P-wetherbeei_contig53331.1.1 ID=mRNA_P-wetherbeei_contig53331.1.1|Name=mRNA_P-wetherbeei_contig53331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig53331:115..537+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGGACACCCAAGACCATTTCGCTGCCGCGCCGCCTGATTTGCGA
CCTGATGCGGGCCTCGATGGACGTGCCCTTCGTCTCGTTGTCCCGTTCGC
TGCATATTCGCCCCCTGCTGGAGGCCCGCGCCAGCGCAAGGGAGCCCGCT
GGCTGGGCCGCGATGTTCGTCAAGGCCTTCGCCCTGGTCGCCAGGGACGA
GCCGATCCTGCGCACCGTCTACGCCAAATGGCCCTGGCCGATGCTCTACG
AGCTTCCCAAGAGCGTGGCGCTGGTCGCCATTGCCCGGGTCGAGGATGGC
GAGGAATGCGTGCTGCCGCAGCGAATCGCCGCCCCCGAGGCCATGGCGCT
GGCGGCGGTCGATGCCGAGATCCGGCGCGGCAAGACGGCGCCGATCGACG
ACGTGCCGATGTTCCGCAAGATC
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