mRNA_P-wetherbeei_contig53322.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53322.1.1
Unique NamemRNA_P-wetherbeei_contig53322.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: UPI000577D29D (zincin-like metallopeptidase domain-containing protein n=1 Tax=Bradyrhizobium japonicum TaxID=375 RepID=UPI000577D29D)

HSP 1 Score: 188 bits (477), Expect = 7.700e-57
Identity = 94/139 (67.63%), Postives = 112/139 (80.58%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRV 417
            F+  TGA+I +GGDRAYYR STD I MP +  F  TATM+RSE +YATL+HE  H+SGA+ RL R+FG RFGD+AYA EELVAE+GAAFLCAEL IT   RADHAQYLA WL +LK D RA+F AAAKA+EA++YLKR+
Sbjct:  159 FVNATGAKIEHGGDRAYYRPSTDHIQMPSEDAFCGTATMSRSEGYYATLVHELTHWSGAKHRLGREFGKRFGDEAYAAEELVAEIGAAFLCAELQITQETRADHAQYLAQWLKLLKNDSRAIFTAAAKASEAASYLKRL 297          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: A0A1V4HX63_NITVU (Peptidase n=1 Tax=Nitrobacter vulgaris TaxID=29421 RepID=A0A1V4HX63_NITVU)

HSP 1 Score: 181 bits (459), Expect = 4.330e-54
Identity = 90/137 (65.69%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLK 411
            F++ T ARI +GGDRAYYR STD I MP +  F  TATM+RSE +YATL+HE  H+SGA+ RL+R+ G RFGD AYA EELVAE+GAAFLCAEL IT   RADHAQYLA WL ++K D RA+F AAAKA+EA+++LK
Sbjct:  159 FVSATAARIEHGGDRAYYRPSTDHIQMPSEDAFCGTATMSRSEGYYATLVHELTHWSGAKHRLDREMGKRFGDHAYAAEELVAEIGAAFLCAELGITQETRADHAQYLAQWLTMMKSDSRAVFAAAAKASEAASFLK 295          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: UPI0015E650CA (zincin-like metallopeptidase domain-containing protein n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI0015E650CA)

HSP 1 Score: 179 bits (453), Expect = 3.030e-53
Identity = 91/139 (65.47%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRV 417
            F+  T   I YGG RAYYR S D + MPD+H FT TAT +RSEA+YA L HE  H SGA+ RL+R    RFG++AYA EELVAELGAAFLCAEL IT  PR DHAQY+ NWLAVLK D RA+F AAAKA+EA  YLKR+
Sbjct:  154 FVTATNVDIRYGGSRAYYRPSGDFVQMPDEHLFTGTATSSRSEAYYAVLCHELTHASGAKHRLDRDLSGRFGNEAYAMEELVAELGAAFLCAELGITPEPRLDHAQYIHNWLAVLKSDNRAIFTAAAKASEAVGYLKRI 292          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: A0A1Q3YVA9_9HYPH (Peptidase n=1 Tax=Devosia sp. 67-54 TaxID=1895754 RepID=A0A1Q3YVA9_9HYPH)

HSP 1 Score: 175 bits (444), Expect = 6.510e-52
Identity = 87/140 (62.14%), Postives = 111/140 (79.29%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQ 420
            F+  T A I  GGDRAYYR STD I MPD++ FT T +MTRSE++YATL+HE VH+SGA+ RL+R+ G RFGD AYA EELVAE+GAAFLC++L IT   RADHAQYL+ WL +LK D +A+F AAA+A+EA+ YL+ ++
Sbjct:  156 FVVSTNATICRGGDRAYYRPSTDTIQMPDENLFTGTESMTRSESYYATLVHELVHWSGAKHRLDREMGKRFGDDAYAAEELVAEIGAAFLCSDLRITQDVRADHAQYLSAWLKMLKSDSKAIFAAAARASEAATYLRGLE 295          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: A0A840N225_9BRAD (Antirestriction protein ArdC n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A840N225_9BRAD)

HSP 1 Score: 175 bits (444), Expect = 7.660e-52
Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRV 417
            F++ TGARI +GGDRA+YR   D I MP +  F  T +++RSE +YATL+HE  H++GA+ RL+R FG RFGDQAYA EELVAE+GAAFLCAEL IT   R DHAQYLA WL ++K D RA+F AAAKA+EA++YLKR+
Sbjct:  158 FVSATGARIEHGGDRAFYRPQADHIQMPSEDTFCGTESLSRSEGYYATLVHELTHWTGAKHRLDRAFGKRFGDQAYAAEELVAEIGAAFLCAELQITQDVRPDHAQYLAQWLKLMKGDARAVFTAAAKASEAASYLKRL 296          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: A0A2M9FW40_9PROT (Peptidase n=1 Tax=Minwuia thermotolerans TaxID=2056226 RepID=A0A2M9FW40_9PROT)

HSP 1 Score: 175 bits (443), Expect = 1.210e-51
Identity = 88/140 (62.86%), Postives = 107/140 (76.43%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQ 420
            F+  TGA + YGG+RA+YR S D I MP+  RF  T T T +E FY+TLLHE  H+SGA+ R NR+FG RFGDQAYA EELVAELGAAFLCA+L I+ TPR DHA Y+ NWL VLK DK+A+F AA+KAA+AS +L  +Q
Sbjct:  160 FVRATGATVKYGGERAFYRPSDDIIQMPERERFLGTETSTPTEGFYSTLLHELTHWSGAKHRCNREFGKRFGDQAYAMEELVAELGAAFLCADLGISVTPRPDHAAYIENWLQVLKADKKAIFTAASKAAQASDFLAGLQ 299          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: A0A7C8LJF1_9CAUL (Peptidase M neutral zinc metallopeptidase zinc-binding site n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A7C8LJF1_9CAUL)

HSP 1 Score: 174 bits (442), Expect = 2.810e-51
Identity = 84/141 (59.57%), Postives = 112/141 (79.43%), Query Frame = 1
Query:    4 IAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQPP 426
            +A +GA+I YGGDRA+YR   D++ +P+ +RFT T TMT +EAF AT LHE +H+SGA+ RL+R FG RFGD+AYAFEEL+AELGAA+LCAEL +T   R DHAQYLA+WL+V+K+DK+A+F AA +A  A+ +L +  PP
Sbjct:  162 LAASGAQIVYGGDRAFYRPLGDQVQIPEPNRFTGTETMTPAEAFDATRLHELIHWSGAKHRLDRDFGKRFGDRAYAFEELIAELGAAYLCAELGVTPIARPDHAQYLASWLSVMKEDKKAIFTAAGQAQRAATFLMQFAPP 302          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: F2J3U1_POLGS (Peptidase M, neutral zinc metallopeptidase, zinc-binding site n=10 Tax=Alphaproteobacteria TaxID=28211 RepID=F2J3U1_POLGS)

HSP 1 Score: 174 bits (441), Expect = 2.830e-51
Identity = 87/140 (62.14%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQ 420
            F+AGTGA I +GG RA+YR S D I MP+  RF  T T T +E++YATLLHE VH+SG+  R +RQFG RFGD+AYA EELVAELGAAFLCA+L +T TPR DHA Y+ NWL VLK DK+A+F AA++AA+A+ +L  +Q
Sbjct:  166 FVAGTGATIRHGGTRAFYRPSDDIIQMPERERFLGTETSTATESYYATLLHELVHYSGSPNRCDRQFGKRFGDEAYAMEELVAELGAAFLCADLGVTLTPRPDHAAYIDNWLKVLKADKKAIFTAASQAAKATDFLASLQ 305          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: A0A2N3KD82_9PROT (Peptidase n=1 Tax=Thalassospira marina TaxID=2048283 RepID=A0A2N3KD82_9PROT)

HSP 1 Score: 172 bits (435), Expect = 1.640e-50
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQP 423
            F++ TGA + +GGDRA+YR S D I MPD  RF  + T T +EA+++TLLHE  H+SGA  R +RQFG RFGD AYA EELVAELGAAFLCA+L +T  PR DHA YL NWL VLK DK+A+F AA++AA AS YL  +QP
Sbjct:  154 FVSATGAVVRHGGDRAFYRPSEDIIQMPDRERFLGSETSTATEAYWSTLLHELTHWSGASNRCDRQFGKRFGDDAYAMEELVAELGAAFLCADLGVTLEPRPDHAAYLDNWLKVLKADKKAIFTAASQAARASDYLTGLQP 294          
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Match: UPI000561D258 (zincin-like metallopeptidase domain-containing protein n=1 Tax=Methylocapsa aurea TaxID=663610 RepID=UPI000561D258)

HSP 1 Score: 171 bits (434), Expect = 1.820e-50
Identity = 85/140 (60.71%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    1 FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLLHECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTPRADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQ 420
            F+A TGARI +GG RA+YR STD I +P    F  + T + +E++Y+TLLHE  H++ AE R NR+ G RFGD AYA EELVAELGAAFLCA+L I++ PRADHAQYLA+WL V+K+DK+A+F AA+KA+EA+AYL  +Q
Sbjct:  153 FVAATGARIDHGGTRAFYRPSTDSIQLPPREAFIGSPTSSPAESYYSTLLHELTHWTSAEPRCNRRLGKRFGDHAYAMEELVAELGAAFLCADLQISDEPRADHAQYLAHWLTVMKEDKKAIFTAASKASEAAAYLIGLQ 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53322.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000577D29D7.700e-5767.63zincin-like metallopeptidase domain-containing pro... [more]
A0A1V4HX63_NITVU4.330e-5465.69Peptidase n=1 Tax=Nitrobacter vulgaris TaxID=29421... [more]
UPI0015E650CA3.030e-5365.47zincin-like metallopeptidase domain-containing pro... [more]
A0A1Q3YVA9_9HYPH6.510e-5262.14Peptidase n=1 Tax=Devosia sp. 67-54 TaxID=1895754 ... [more]
A0A840N225_9BRAD7.660e-5262.59Antirestriction protein ArdC n=2 Tax=Bradyrhizobia... [more]
A0A2M9FW40_9PROT1.210e-5162.86Peptidase n=1 Tax=Minwuia thermotolerans TaxID=205... [more]
A0A7C8LJF1_9CAUL2.810e-5159.57Peptidase M neutral zinc metallopeptidase zinc-bin... [more]
F2J3U1_POLGS2.830e-5162.14Peptidase M, neutral zinc metallopeptidase, zinc-b... [more]
A0A2N3KD82_9PROT1.640e-5061.70Peptidase n=1 Tax=Thalassospira marina TaxID=20482... [more]
UPI000561D2581.820e-5060.71zincin-like metallopeptidase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53322contigP-wetherbeei_contig53322:106..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog991905.SL003B_0488
PFAMsDUF1738,EpmC
Model size432
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.64e-52
EggNOG OGsCOG4227@1|root,COG4227@2|Bacteria,1MU8I@1224|Proteobacteria,2TRIT@28211|Alphaproteobacteria,4BS79@82117|unclassified Alphaproteobacteria
DescriptionDomain of unknown function (DUF1738)
Cds size432
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.1860702-CDS-P-wetherbeei_contig53322:105..5371683186798.1860702-CDS-P-wetherbeei_contig53322:105..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53322 106..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53322.1.1prot_P-wetherbeei_contig53322.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53322 106..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53322.1.1

>prot_P-wetherbeei_contig53322.1.1 ID=prot_P-wetherbeei_contig53322.1.1|Name=mRNA_P-wetherbeei_contig53322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
FIAGTGARITYGGDRAYYRTSTDEIVMPDDHRFTDTATMTRSEAFYATLL
HECVHFSGAEKRLNRQFGNRFGDQAYAFEELVAELGAAFLCAELAITNTP
RADHAQYLANWLAVLKQDKRALFHAAAKAAEASAYLKRVQPPA*
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mRNA from alignment at P-wetherbeei_contig53322:106..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53322.1.1 ID=mRNA_P-wetherbeei_contig53322.1.1|Name=mRNA_P-wetherbeei_contig53322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig53322:106..537- (Phaeothamnion wetherbeei SAG_119_79)
TTCATTGCCGGAACCGGTGCACGGATCACCTATGGCGGCGACCGTGCCTA TTACCGGACCTCGACCGATGAGATCGTGATGCCTGACGACCACCGCTTCA CCGATACCGCCACCATGACGCGCTCGGAAGCCTTCTACGCGACGCTGCTG CACGAATGCGTGCATTTCTCCGGCGCCGAAAAGCGCCTCAACCGGCAGTT CGGCAATCGCTTCGGCGATCAAGCCTACGCCTTCGAGGAGCTGGTCGCCG AATTGGGTGCCGCGTTCCTGTGTGCCGAGCTGGCGATCACCAACACCCCG CGCGCCGATCATGCGCAGTATCTCGCCAACTGGCTCGCCGTCCTCAAGCA GGACAAGCGGGCGCTGTTCCATGCCGCGGCCAAAGCGGCCGAGGCGAGCG CCTATCTGAAACGTGTGCAGCCGCCCGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53322:106..537-

>mRNA_P-wetherbeei_contig53322.1.1 ID=mRNA_P-wetherbeei_contig53322.1.1|Name=mRNA_P-wetherbeei_contig53322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig53322:106..537- (Phaeothamnion wetherbeei SAG_119_79)
TTCATTGCCGGAACCGGTGCACGGATCACCTATGGCGGCGACCGTGCCTA
TTACCGGACCTCGACCGATGAGATCGTGATGCCTGACGACCACCGCTTCA
CCGATACCGCCACCATGACGCGCTCGGAAGCCTTCTACGCGACGCTGCTG
CACGAATGCGTGCATTTCTCCGGCGCCGAAAAGCGCCTCAACCGGCAGTT
CGGCAATCGCTTCGGCGATCAAGCCTACGCCTTCGAGGAGCTGGTCGCCG
AATTGGGTGCCGCGTTCCTGTGTGCCGAGCTGGCGATCACCAACACCCCG
CGCGCCGATCATGCGCAGTATCTCGCCAACTGGCTCGCCGTCCTCAAGCA
GGACAAGCGGGCGCTGTTCCATGCCGCGGCCAAAGCGGCCGAGGCGAGCG
CCTATCTGAAACGTGTGCAGCCGCCCGCGTGA
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