mRNA_P-wetherbeei_contig5332.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5332.2.1
Unique NamemRNA_P-wetherbeei_contig5332.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A8J2SH82_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH82_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.630e-36
Identity = 70/161 (43.48%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  226 ALKHVEFCLGCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQGGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLGAQLVARR 708
            +L  +EFC  C DP  EGS    L    G  D+ +   +  A+PNDA+T  +NA +L G V LV R    ++ KI+ AQ AGAV V++VD+G C+ +  +CGR G    GGFA RDDP +W  VK+P+VLV+   G+R++ LM L+   V  LG Q V+ R
Sbjct:   46 SLARIEFCAYCEDPHTEGSLARGLTALQGARDYKITSKLVYALPNDASTKPMNADELTGNVALVHRSATPLVQKILHAQEAGAVGVVLVDDGRCESDL-NCGRIGSARLGGFAPRDDPSSWRLVKIPSVLVSQETGKRIRRLMPLEHFEVPKLGTQWVSPR 205          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH)

HSP 1 Score: 132 bits (333), Expect = 1.550e-34
Identity = 65/162 (40.12%), Postives = 107/162 (66.05%), Query Frame = 1
Query:  208 GNSKSAALKHVEFCLGCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLL-NAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCG-RSGGKEQGGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLG 687
            GN    ALK + +CL C DPR+EGS + +L  ++G+ ++SV G +   VPN A    L N   L+ R+  V+RG +S++DK+++ Q A A+ V++ D+G+C ++F  CG R+G  ++GGFA  D+ ++W AV++P V+VT+ N +RL+  M ++SV +  LG
Sbjct:   32 GNDADGALKWITYCLKCPDPRSEGSILPSLNAKYGVDEYSVTGELVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDGSCYEDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRLRDAMGIKSVYIPGLG 193          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.400e-31
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  394 LAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQGGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLGAQLVAR 705
            +A  VVL ERG V +++KI++AQ AGAV VIVVDNG CDD   DCGR GG   GGFA RD   AW  VK+PAV+V+AA+GER + +M LQ + V  LG QLV R
Sbjct:    1 MAACVVLFERGEVPVVEKILKAQTAGAVGVIVVDNGGCDDGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMLLQKIVVEGLGEQLVQR 104          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.240e-25
Identity = 66/185 (35.68%), Postives = 96/185 (51.89%), Query Frame = 1
Query:  160 DDGSIVVSLHGSSRRGGNSKSAALKHVEFCLGCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQGGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLGAQLVARRQR 714
            + GS    + G  R G        + + FC  C D  + GS V     R+   D+ V G +A AVPN A  DL N   L GR+VLV+RG V I++K+ R Q AG +AV++VD+G C D F +CG  G +    F  +DD   W  + +P VL+   +G R+++ M L  ++V  L       R+R
Sbjct:   28 ESGSFSTGIMGVLRSG--------RGLTFCKKCHDVASLGSFVHTWDSRYNPSDYHVQGEIAYAVPNTANDDLFNIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDGECSDGF-ECGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRIKARMSLVRMDVPDLALSHSILRRR 203          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A485LS24_9STRA (Aste57867_24352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS24_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.830e-25
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 1
Query:  244 FCLGCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQGGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLGAQLVAR 705
            FC  C D  +EGS V A    +    F V G +  AVPN A  DL NA  + GR+ LV+RG V I++K+ R   AG V V+VVD+G C   F  CG  G     GF  +D+   W+++++P VLV   +G+R+++ +DL  +++  +G Q V R
Sbjct:   51 FCHKCDDVTSEGSFVPAWGSHYNPDSFHVHGEIVYAVPNTANEDLYNAHHVHGRIALVDRGDVPIVEKVKRVHEAGGVGVVVVDSGECGAGFT-CGVLGTPTSNGFLEQDEWFKWKSIRIPVVLVRRDDGDRIKAAIDLVEMDLPDVGLQWVLR 203          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A5A8DWN8_CAFRO (PA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWN8_CAFRO)

HSP 1 Score: 103 bits (257), Expect = 4.460e-23
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  238 VEFCLGCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDN-GACDDEFADCGRSGGKEQG-GFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLGAQLVAR 705
            + FC  C DPR +GS     A   G   F +   +  +VPNDA+  L+N V   G  VLVERG   I+ K++ AQ AGAVAVIV+D  G C + F +CGR G    G GFA  D    W+ V +P  LVT    +RL   MD   +++  +G+QLV +
Sbjct:   86 LTFCRDC-DPREQGSFATIWAAAHGPPSFDIEAELVYSVPNDASEPLVNPV--RGAAVLVERGGAPIITKVIHAQEAGAVAVIVIDTPGDCSEAF-ECGRLGSSSGGTGFAAADPASRWQHVIIPVALVTRGTAQRLVLQMDATEMHIEGMGSQLVTQ 239          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.230e-15
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  223 AALKHVEFCLGCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATD-LLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGAC 507
            A L+ +EFC  C DP  EG+ V  L    G  ++ V G +A AVPN      LLN+++L+G++  V+RG + +++KI+ AQ AGAV V++ D+G C
Sbjct:   53 AGLRSLEFCRSCPDPHLEGTQVLGLGAAQGPKEYHVTGDMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDGNC 148          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A482RLA8_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RLA8_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 3.530e-14
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  283 HVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQ--GGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDL 660
            H W  A       F V   +  AVPNDA+  L N V   G +VL +RG  SI  K V AQ AGA+A+++VD+G+C D F   G  G K     GF    +  AW+ V++P  L+ A +G RL + + L
Sbjct:   31 HTWD-AYNASATTFHVHAEIVYAVPNDASRPLYNVV--GGTIVLAKRGGASIPTKAVHAQRAGALALLIVDDGSCGDAFECGGWLGSKADHPDGFIVAHELSAWQQVRIPVALIAARDGARLDAALRL 155          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.870e-13
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  274 EGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQGGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASL 684
            E   VW     F    F V   V +A P DA ++L N   +  R+V+V+RG + I+ K++ AQ AGA+ VIV D+G C   F      G     G+A  D PR W  V+VP VL+   + ERL +     + +  S+
Sbjct:   66 EDIDVWTC--HFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESM 200          
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Match: A0A2R5GKD5_9STRA (PA domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKD5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.010e-11
Identity = 44/125 (35.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  322 FSVVGGVALAVPNDAATDLLNAVDLAGRVVLVERGR-VSIMDKIVRAQAAGAVAVIVVDN-GACDDEFADCGRSGGKEQG-----GFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNV 675
            + V G +A+AVPNDA   ++N   +  R+ LV RG  V++++K++R Q AGA AVI+VD    CD+ F  CG   G+        GFA++D   +W +V++PA+L+   +  +L    +L ++ +
Sbjct:   37 YHVDGRLAIAVPNDAREAIINGHQVKDRLTLVYRGGGVTLLEKVLRVQEAGASAVIIVDEEDGCDENFY-CGPFLGQRPADRLSLGFAHQDLASSWRSVRIPAILIRREDALKLTRWENLGTITL 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5332.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2SH82_9STRA6.630e-3643.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482SJ43_9ARCH1.550e-3440.12PA domain-containing protein n=1 Tax=archaeon TaxI... [more]
D7FPJ4_ECTSI7.400e-3158.65Vacuolar sorting receptor, putative (ISS) n=1 Tax=... [more]
A0A6G0W7Z3_9STRA1.240e-2535.68PA domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A485LS24_9STRA4.830e-2538.96Aste57867_24352 protein n=1 Tax=Aphanomyces stella... [more]
A0A5A8DWN8_CAFRO4.460e-2341.14PA domain-containing protein n=3 Tax=Cafeteria roe... [more]
A0A7S2WGD9_9STRA2.230e-1541.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482RLA8_9ARCH3.530e-1439.06PA domain-containing protein n=1 Tax=archaeon TaxI... [more]
D8LI37_ECTSI6.870e-1335.04PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A2R5GKD5_9STRA6.010e-1135.20PA domain-containing protein n=1 Tax=Hondaea ferme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5332contigP-wetherbeei_contig5332:1607..2478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI37
PFAMsMyb_DNA-binding,PA
Model size776
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.81e-14
EggNOG OGs29K29@1|root,2RTB6@2759|Eukaryota
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.1064172-UTR-P-wetherbeei_contig5332:1606..16541683186798.1064172-UTR-P-wetherbeei_contig5332:1606..1654Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5332 1607..1654 +
1683186798.117271-UTR-P-wetherbeei_contig5332:1750..18041683186798.117271-UTR-P-wetherbeei_contig5332:1750..1804Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5332 1751..1804 +
1683186798.1348038-UTR-P-wetherbeei_contig5332:2419..24781683186798.1348038-UTR-P-wetherbeei_contig5332:2419..2478Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5332 2420..2478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186798.1273947-CDS-P-wetherbeei_contig5332:1804..24191683186798.1273947-CDS-P-wetherbeei_contig5332:1804..2419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5332 1805..2419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5332.2.1prot_P-wetherbeei_contig5332.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5332 1805..2419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5332.2.1

>prot_P-wetherbeei_contig5332.2.1 ID=prot_P-wetherbeei_contig5332.2.1|Name=mRNA_P-wetherbeei_contig5332.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MPSVSLVWMLMCLPLLAARDDGSIVVSLHGSSRRGGNSKSAALKHVEFCL
GCADPRAEGSHVWALAPRFGLHDFSVVGGVALAVPNDAATDLLNAVDLAG
RVVLVERGRVSIMDKIVRAQAAGAVAVIVVDNGACDDEFADCGRSGGKEQ
GGFAYRDDPRAWEAVKVPAVLVTAANGERLQSLMDLQSVNVASLGAQLVA
RRQR*
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mRNA from alignment at P-wetherbeei_contig5332:1607..2478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5332.2.1 ID=mRNA_P-wetherbeei_contig5332.2.1|Name=mRNA_P-wetherbeei_contig5332.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=872bp|location=Sequence derived from alignment at P-wetherbeei_contig5332:1607..2478+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTGTGATAGCTTCCACCAGAAGAAGGGCAAATTAGAGGACCAACAAGT AAGCATCTTTTACCGTTTGCTCCCTCAGCGTTTCCTCTCTTTTAAAATTA AAAACTTCAATATCCCCTACCAACGCGCCCCGTCTGATGAGCAGGCTATC CAAACCAAGCAAACGCTTTAACATAACTCCTTGGCGACGAACAGGCAAAT GCCCAGTGTCTCCCTTGTATGGATGCTGATGTGTCTGCCCTTACTGGCGG CACGCGACGACGGGTCCATCGTAGTCTCCCTCCACGGCAGCTCGCGACGT GGGGGCAACAGCAAGTCCGCCGCGCTCAAACATGTCGAGTTCTGCCTAGG TTGCGCCGACCCCCGAGCGGAAGGGTCGCACGTCTGGGCGCTCGCGCCGC GGTTCGGGCTGCACGACTTTAGCGTCGTCGGCGGCGTCGCCCTCGCCGTC CCCAACGACGCCGCGACGGACCTCCTCAACGCGGTTGACCTCGCCGGTCG CGTCGTGCTCGTTGAGCGCGGCCGCGTCTCGATCATGGACAAGATCGTGC GCGCACAGGCTGCGGGCGCCGTCGCCGTCATCGTCGTCGACAACGGCGCT TGCGACGACGAGTTTGCCGACTGCGGCCGGTCCGGCGGCAAGGAACAGGG CGGGTTCGCGTACCGGGACGACCCGCGCGCGTGGGAAGCCGTGAAGGTTC CCGCCGTGCTGGTGACGGCAGCCAATGGGGAGCGGCTCCAGTCGCTGATG GATCTGCAGAGCGTCAACGTCGCCAGCCTGGGCGCGCAGCTCGTGGCGCG CCGGCAGAGATAGCAGTTTTGTTAGGAGGTATTTCAGCCACGTGCGGCTG TCTAAAACAACATTTGAGCCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5332:1607..2478+

>mRNA_P-wetherbeei_contig5332.2.1 ID=mRNA_P-wetherbeei_contig5332.2.1|Name=mRNA_P-wetherbeei_contig5332.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig5332:1607..2478+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAGTGTCTCCCTTGTATGGATGCTGATGTGTCTGCCCTTACTGGC
GGCACGCGACGACGGGTCCATCGTAGTCTCCCTCCACGGCAGCTCGCGAC
GTGGGGGCAACAGCAAGTCCGCCGCGCTCAAACATGTCGAGTTCTGCCTA
GGTTGCGCCGACCCCCGAGCGGAAGGGTCGCACGTCTGGGCGCTCGCGCC
GCGGTTCGGGCTGCACGACTTTAGCGTCGTCGGCGGCGTCGCCCTCGCCG
TCCCCAACGACGCCGCGACGGACCTCCTCAACGCGGTTGACCTCGCCGGT
CGCGTCGTGCTCGTTGAGCGCGGCCGCGTCTCGATCATGGACAAGATCGT
GCGCGCACAGGCTGCGGGCGCCGTCGCCGTCATCGTCGTCGACAACGGCG
CTTGCGACGACGAGTTTGCCGACTGCGGCCGGTCCGGCGGCAAGGAACAG
GGCGGGTTCGCGTACCGGGACGACCCGCGCGCGTGGGAAGCCGTGAAGGT
TCCCGCCGTGCTGGTGACGGCAGCCAATGGGGAGCGGCTCCAGTCGCTGA
TGGATCTGCAGAGCGTCAACGTCGCCAGCCTGGGCGCGCAGCTCGTGGCG
CGCCGGCAGAGATAG
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