mRNA_P-wetherbeei_contig53275.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53275.1.1
Unique NamemRNA_P-wetherbeei_contig53275.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53275.1.1 vs. uniprot
Match: H0TNH0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TNH0_9BRAD)

HSP 1 Score: 58.2 bits (139), Expect = 7.250e-10
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 ACWTLRNRFAKRRRPARDFR-TGSGRIAQLVEQMTLNHRVPGSSPGAPT 144
            +CWT  NRFAKR    + F    SGRIAQLVEQ+TLN RV GSSP APT
Sbjct:    7 SCWTSGNRFAKRPALVKVFPDASSGRIAQLVEQLTLNQRVLGSSPSAPT 55
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BLAST of mRNA_P-wetherbeei_contig53275.1.1 vs. uniprot
Match: A0A7V8AHZ6_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V8AHZ6_9PROT)

HSP 1 Score: 47.8 bits (112), Expect = 4.700e-6
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = -1 
Query:   70 GGRTRARTWDPMIKSHLLYQLSYAP 144
            GGRTR RT DP+IKS LLYQLSYAP
Sbjct:   33 GGRTRTRTLDPLIKSQLLYQLSYAP 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
H0TNH0_9BRAD7.250e-1065.31Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A7V8AHZ6_9PROT4.700e-684.00Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53275contigP-wetherbeei_contig53275:240..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.6667018-CDS-P-wetherbeei_contig53275:239..3831683186797.6667018-CDS-P-wetherbeei_contig53275:239..383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53275 240..383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53275.1.1prot_P-wetherbeei_contig53275.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53275 240..383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53275.1.1

>prot_P-wetherbeei_contig53275.1.1 ID=prot_P-wetherbeei_contig53275.1.1|Name=mRNA_P-wetherbeei_contig53275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
ACWTLRNRFAKRRRPARDFRTGSGRIAQLVEQMTLNHRVPGSSPGAPT
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mRNA from alignment at P-wetherbeei_contig53275:240..383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53275.1.1 ID=mRNA_P-wetherbeei_contig53275.1.1|Name=mRNA_P-wetherbeei_contig53275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig53275:240..383+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTGCTGGACATTGCGGAATCGCTTTGCTAAACGACGCCGTCCCGCAAG
GGATTTCCGGACTGGTTCCGGGCGCATAGCTCAGTTGGTAGAGCAGATGA
CTCTTAATCATCGGGTCCCAGGTTCGAGCCCTGGTGCGCCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53275:240..383+

>mRNA_P-wetherbeei_contig53275.1.1 ID=mRNA_P-wetherbeei_contig53275.1.1|Name=mRNA_P-wetherbeei_contig53275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig53275:240..383+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTGCTGGACATTGCGGAATCGCTTTGCTAAACGACGCCGTCCCGCAAG
GGATTTCCGGACTGGTTCCGGGCGCATAGCTCAGTTGGTAGAGCAGATGA
CTCTTAATCATCGGGTCCCAGGTTCGAGCCCTGGTGCGCCCACC
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