mRNA_P-wetherbeei_contig5323.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5323.2.1
Unique NamemRNA_P-wetherbeei_contig5323.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5323.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5323contigP-wetherbeei_contig5323:2119..2864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size748
Hectar predicted targeting categoryother localisation
Exons1
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.2034402-UTR-P-wetherbeei_contig5323:2118..23721683186797.2034402-UTR-P-wetherbeei_contig5323:2118..2372Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5323 2119..2372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.2139554-CDS-P-wetherbeei_contig5323:2372..28641683186797.2139554-CDS-P-wetherbeei_contig5323:2372..2864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5323 2373..2864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5323.2.1prot_P-wetherbeei_contig5323.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5323 2373..2864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5323.2.1

>prot_P-wetherbeei_contig5323.2.1 ID=prot_P-wetherbeei_contig5323.2.1|Name=mRNA_P-wetherbeei_contig5323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
AGFLSRGGIFDFYVSAAWALQVRLAASCSSPEGCSLCQQVGFSAEPCNLV
RFVVHFLHPVPSLPRFVTNNFLSWAGLPERGPQRGKPGGSAEQGHDARRR
EDLQHAKQRQSRLQRPLPRRQVATAATIVGRRCFSVRGCRRPGGGGLWWP
GGGRPHRATGRRG*
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mRNA from alignment at P-wetherbeei_contig5323:2119..2864-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5323.2.1 ID=mRNA_P-wetherbeei_contig5323.2.1|Name=mRNA_P-wetherbeei_contig5323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=746bp|location=Sequence derived from alignment at P-wetherbeei_contig5323:2119..2864- (Phaeothamnion wetherbeei SAG_119_79)
GCGGGTTTTTTATCTCGAGGCGGAATCTTTGATTTTTATGTCTCTGCGGC
ATGGGCTTTACAAGTGCGGCTTGCTGCTAGTTGCAGTAGCCCAGAAGGCT
GTTCTCTTTGTCAGCAGGTCGGCTTCAGTGCCGAACCGTGTAATCTTGTC
CGTTTTGTCGTGCACTTTCTTCATCCTGTCCCATCTCTGCCCCGTTTTGT
CACAAACAACTTCCTCTCGTGGGCAGGACTGCCTGAGCGAGGACCCCAAC
GTGGTAAGCCAGGTGGATCTGCTGAGCAAGGGCATGACGCGCGCCGCCGA
GAAGACCTCCAGCATGCTAAGCAGCGCCAAAGCCGGCTTCAGCGCCCTCT
TCCGCGCCGCCAGGTAGCCACCGCCGCTACTATTGTTGGGCGCCGCTGCT
TCTCTGTACGAGGGTGCCGGCGGCCCGGCGGCGGCGGCCTGTGGTGGCCT
GGTGGTGGCCGGCCGCACCGTGCAACCGGACGCCGAGGATAAGAATGCAG
AAAGCGCTGTGCTCTAACATCGGCGCTGTCGGCAATGTAGAAAAGAGAGC
GGGTTATGTATTGTGTACGATGGGAGGCGATCACGGGATGGAAAGGAGAA
GAGGGAAAACAACAGACGAGCTGTCGACTGGATTAGGCCCGCCGTTGCCT
ACTGTTTCAGTTTGGATCATTACGACGAGTTGAGGAGGGCCGCATTCCGC
AGATATAATCACATAATAGTACCCACCCTGGCGTCCAGCCAACCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5323:2119..2864-

>mRNA_P-wetherbeei_contig5323.2.1 ID=mRNA_P-wetherbeei_contig5323.2.1|Name=mRNA_P-wetherbeei_contig5323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig5323:2119..2864- (Phaeothamnion wetherbeei SAG_119_79)
GCGGGTTTTTTATCTCGAGGCGGAATCTTTGATTTTTATGTCTCTGCGGC
ATGGGCTTTACAAGTGCGGCTTGCTGCTAGTTGCAGTAGCCCAGAAGGCT
GTTCTCTTTGTCAGCAGGTCGGCTTCAGTGCCGAACCGTGTAATCTTGTC
CGTTTTGTCGTGCACTTTCTTCATCCTGTCCCATCTCTGCCCCGTTTTGT
CACAAACAACTTCCTCTCGTGGGCAGGACTGCCTGAGCGAGGACCCCAAC
GTGGTAAGCCAGGTGGATCTGCTGAGCAAGGGCATGACGCGCGCCGCCGA
GAAGACCTCCAGCATGCTAAGCAGCGCCAAAGCCGGCTTCAGCGCCCTCT
TCCGCGCCGCCAGGTAGCCACCGCCGCTACTATTGTTGGGCGCCGCTGCT
TCTCTGTACGAGGGTGCCGGCGGCCCGGCGGCGGCGGCCTGTGGTGGCCT
GGTGGTGGCCGGCCGCACCGTGCAACCGGACGCCGAGGATAA
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