mRNA_P-wetherbeei_contig53189.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53189.1.1
Unique NamemRNA_P-wetherbeei_contig53189.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53189.1.1 vs. uniprot
Match: UPI0019BEEF0D (Uncharacterized protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019BEEF0D)

HSP 1 Score: 92.0 bits (227), Expect = 2.220e-20
Identity = 62/137 (45.26%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:    1 MVADESGHLQQTLPTYTWWVPGAAVGASKLYADLFNASGSGKTLELRGLWAIPKTDVAVTGVVSVEIGLYRTSAVGTGGTAHTYNGGSASTTHVITPWDTANAAPPTQVTARSLPTGGATISALYWAQYLSTEETNA 411
            ++AD  GH+  T   Y  +VP +AVGA+K++ DLFNASGSG  L L      P  D AVTG + ++  L RTS +GTGGTA T           I+  D   A   T +TAR  PTGGAT  AL       TEETNA
Sbjct:   31 VLADAGGHIVGTRDAYRLFVPSSAVGANKVFFDLFNASGSGVGLRLVQARVFPNLDTAVTGTLGIQAYLTRTSTIGTGGTASTTEXXXXXAA-TISKLDPGAATLNTSITARLAPTGGATAGALIGHASFFTEETNA 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53189.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019BEEF0D2.220e-2045.26Uncharacterized protein n=1 Tax=Gemmatimonadaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53189contigP-wetherbeei_contig53189:94..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.4236338-CDS-P-wetherbeei_contig53189:93..5071683186796.4236338-CDS-P-wetherbeei_contig53189:93..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53189 94..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53189.1.1prot_P-wetherbeei_contig53189.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53189 94..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53189.1.1

>prot_P-wetherbeei_contig53189.1.1 ID=prot_P-wetherbeei_contig53189.1.1|Name=mRNA_P-wetherbeei_contig53189.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MVADESGHLQQTLPTYTWWVPGAAVGASKLYADLFNASGSGKTLELRGLW
AIPKTDVAVTGVVSVEIGLYRTSAVGTGGTAHTYNGGSASTTHVITPWDT
ANAAPPTQVTARSLPTGGATISALYWAQYLSTEETNAA
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mRNA from alignment at P-wetherbeei_contig53189:94..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53189.1.1 ID=mRNA_P-wetherbeei_contig53189.1.1|Name=mRNA_P-wetherbeei_contig53189.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig53189:94..507+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCCGATGAATCTGGCCATCTGCAACAAACCCTTCCGACTTACAC
CTGGTGGGTTCCTGGGGCTGCGGTCGGCGCATCGAAACTCTATGCCGACC
TTTTCAATGCGTCAGGTTCCGGAAAGACGCTTGAACTTAGAGGGCTGTGG
GCGATTCCCAAAACGGACGTTGCCGTCACGGGGGTGGTATCTGTCGAAAT
AGGGCTGTACCGAACTTCTGCGGTTGGCACAGGCGGCACGGCGCACACCT
ATAACGGCGGATCAGCATCGACCACGCACGTCATCACGCCTTGGGACACC
GCCAACGCCGCGCCGCCGACGCAAGTGACGGCGCGGTCTTTGCCCACTGG
TGGCGCGACGATTTCAGCACTGTATTGGGCGCAGTACCTGTCAACAGAAG
AAACAAACGCCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53189:94..507+

>mRNA_P-wetherbeei_contig53189.1.1 ID=mRNA_P-wetherbeei_contig53189.1.1|Name=mRNA_P-wetherbeei_contig53189.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig53189:94..507+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCCGATGAATCTGGCCATCTGCAACAAACCCTTCCGACTTACAC
CTGGTGGGTTCCTGGGGCTGCGGTCGGCGCATCGAAACTCTATGCCGACC
TTTTCAATGCGTCAGGTTCCGGAAAGACGCTTGAACTTAGAGGGCTGTGG
GCGATTCCCAAAACGGACGTTGCCGTCACGGGGGTGGTATCTGTCGAAAT
AGGGCTGTACCGAACTTCTGCGGTTGGCACAGGCGGCACGGCGCACACCT
ATAACGGCGGATCAGCATCGACCACGCACGTCATCACGCCTTGGGACACC
GCCAACGCCGCGCCGCCGACGCAAGTGACGGCGCGGTCTTTGCCCACTGG
TGGCGCGACGATTTCAGCACTGTATTGGGCGCAGTACCTGTCAACAGAAG
AAACAAACGCCGCG
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