mRNA_P-wetherbeei_contig53188.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53188.1.1
Unique NamemRNA_P-wetherbeei_contig53188.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A838GGG8_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GGG8_9CHLR)

HSP 1 Score: 102 bits (253), Expect = 5.490e-24
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MPLPRRKCATCRYFQSNQLSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSA 177
            MP  +R+C+ C++FQS QLSGNGWCTHP RQ +SD++ILVR+ ELACRNSWG DLWV A
Sbjct:    1 MPDSKRQCSRCQFFQSVQLSGNGWCTHPKRQVASDLKILVREKELACRNSWGDDLWVDA 59
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A7W0QPW8_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0QPW8_9CHLR)

HSP 1 Score: 100 bits (250), Expect = 2.700e-23
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MPLPRRKCATCRYFQSNQLSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSA 177
            MP  +R+C+ C++FQ+ QLSGNGWCTHP RQ +SD++ILVR+ ELACRNSWG DLW+ A
Sbjct:    1 MPDSKRQCSRCQFFQNAQLSGNGWCTHPKRQVASDLKILVREKELACRNSWGDDLWIDA 59
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A7W0N934_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0N934_9CHLR)

HSP 1 Score: 95.9 bits (237), Expect = 3.860e-23
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    7 LPRRKCATCRYFQSNQLSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSADGDQP 192
            +P+RKC TCRYF+ + L GNGWC HP  +TS+D  I+VRKDEL CRN W  DLW     DQP
Sbjct:    1 MPKRKCGTCRYFEESSLPGNGWCNHPQWRTSTDTLIMVRKDELRCRNGWLDDLWAPTPDDQP 62
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A7W0PPF3_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PPF3_9CHLR)

HSP 1 Score: 97.4 bits (241), Expect = 4.810e-23
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 RRKCATCRYFQSNQLSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSA 177
            +R+C+ C++FQ  QLSGNGWCTHP RQ +SD++ILVR+ ELACRNSWG DLW+ A
Sbjct:    5 KRQCSKCQFFQIAQLSGNGWCTHPKRQVASDIKILVREKELACRNSWGDDLWIDA 59
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A7V8WUA8_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WUA8_9CHLR)

HSP 1 Score: 98.6 bits (244), Expect = 1.760e-22
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 MPLPRRKCATCRYFQSNQLSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSADG 183
            M L +RKC++CR+     L GNGWCTHP RQ SSDVRILVRK ELACRN+WG+DLW  A G
Sbjct:    1 MSLQKRKCSSCRFLADATLPGNGWCTHPKRQVSSDVRILVRKGELACRNNWGADLWEPAAG 61
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A7V8VW15_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VW15_9CHLR)

HSP 1 Score: 84.7 bits (208), Expect = 1.290e-17
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   55 LSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSADGDQPV 195
            +SGNGWCTHP RQ SSDVRILVRK ELACRNSWG DLW S    +P 
Sbjct:    1 MSGNGWCTHPKRQISSDVRILVRKGELACRNSWGGDLWESVGAQEPT 47
[Close]
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Match: A0A7W0A535_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A535_9CHLR)

HSP 1 Score: 71.6 bits (174), Expect = 5.260e-13
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   55 LSGNGWCTHPSRQTSSDVRILVRKDELACRNSWGSDLWVSADGD 186
            ++G+GWCTHP RQ +  VR+LVR+ ELACRNSWG DL+   DGD
Sbjct:    1 MAGSGWCTHPKRQDADGVRLLVRRGELACRNSWGGDLFGGKDGD 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A838GGG8_9CHLR5.490e-2469.49Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0QPW8_9CHLR2.700e-2366.10Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0N934_9CHLR3.860e-2359.68Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0PPF3_9CHLR4.810e-2367.27Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7V8WUA8_9CHLR1.760e-2267.21Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A7V8VW15_9CHLR1.290e-1774.47Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0A535_9CHLR5.260e-1363.64Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53188contigP-wetherbeei_contig53188:314..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog309801.trd_0353
Model size201
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.97e-15
EggNOG OGs2BQKE@1|root,32JGF@2|Bacteria,2GBAE@200795|Chloroflexi,27YI2@189775|Thermomicrobia
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.3975058-CDS-P-wetherbeei_contig53188:313..5141683186796.3975058-CDS-P-wetherbeei_contig53188:313..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53188 314..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53188.1.1prot_P-wetherbeei_contig53188.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53188 314..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53188.1.1

>prot_P-wetherbeei_contig53188.1.1 ID=prot_P-wetherbeei_contig53188.1.1|Name=mRNA_P-wetherbeei_contig53188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MPLPRRKCATCRYFQSNQLSGNGWCTHPSRQTSSDVRILVRKDELACRNS
WGSDLWVSADGDQPVAS
back to top

mRNA from alignment at P-wetherbeei_contig53188:314..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53188.1.1 ID=mRNA_P-wetherbeei_contig53188.1.1|Name=mRNA_P-wetherbeei_contig53188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig53188:314..514- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTACCAAGGCGAAAATGCGCAACGTGTCGCTATTTCCAGTCGAA
TCAGCTCTCCGGGAACGGATGGTGTACGCATCCCTCGCGCCAGACCTCGA
GCGATGTCCGCATCCTCGTCCGCAAGGACGAGCTTGCCTGCCGCAACTCC
TGGGGTAGCGACCTCTGGGTGAGCGCCGACGGCGACCAGCCCGTCGCCTC
C
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53188:314..514-

>mRNA_P-wetherbeei_contig53188.1.1 ID=mRNA_P-wetherbeei_contig53188.1.1|Name=mRNA_P-wetherbeei_contig53188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig53188:314..514- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTACCAAGGCGAAAATGCGCAACGTGTCGCTATTTCCAGTCGAA
TCAGCTCTCCGGGAACGGATGGTGTACGCATCCCTCGCGCCAGACCTCGA
GCGATGTCCGCATCCTCGTCCGCAAGGACGAGCTTGCCTGCCGCAACTCC
TGGGGTAGCGACCTCTGGGTGAGCGCCGACGGCGACCAGCCCGTCGCCTC
C
back to top