mRNA_P-wetherbeei_contig5317.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5317.1.1
Unique NamemRNA_P-wetherbeei_contig5317.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: B6SLM8_MAIZE (Putative RING zinc finger domain superfamily protein n=2 Tax=Zea mays TaxID=4577 RepID=B6SLM8_MAIZE)

HSP 1 Score: 80.9 bits (198), Expect = 1.640e-16
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  100 EEDDAVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVVHEA 285
            ++D+  G  + D+C ICLGE+ DGE +R++P C H FH PC++ WL  +G CP C+R V +A
Sbjct:  114 KDDEEEGAGSGDVCAICLGEFADGEKVRVLPRCGHAFHVPCVDAWLLSRGSCPTCRRPVMDA 175          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A3L6T2V6_PANMI (RING-H2 finger protein ATL74-like n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6T2V6_PANMI)

HSP 1 Score: 79.7 bits (195), Expect = 2.210e-16
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:  100 EEDDAVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVVHEAT 288
            E  DA G    D+C ICLGE+ DGE +R++P C H FH PC++ WL  +G CP C+R V + +
Sbjct:   82 EGGDAAGAGEEDVCAICLGEFADGEKVRVLPRCGHGFHVPCVDAWLLSRGSCPTCRRPVMDGS 144          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A0E0K3Q8_ORYPU (RING-type domain-containing protein n=6 Tax=Oryza TaxID=4527 RepID=A0A0E0K3Q8_ORYPU)

HSP 1 Score: 79.3 bits (194), Expect = 4.470e-16
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  109 DAVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVV 276
            D  GG+ A+ C ICL E++DG+ +R++P CDHRFHA CI+ WLR    CP C+RV+
Sbjct:   91 DNGGGNEAEECAICLVEFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVL 146          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A811RW73_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RW73_9POAL)

HSP 1 Score: 76.3 bits (186), Expect = 1.120e-14
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  103 EDDAVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVV 276
            E+   G    D+C ICLGE+ DGE +R++P C H FH PC++ WL  +G CP C+R V
Sbjct:  124 EEAGAGDEDEDVCAICLGEFADGEKVRVLPRCGHGFHVPCVDAWLLSRGSCPTCRRPV 181          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: UPI001ADA00D2 (RING-H2 finger protein ATL80-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA00D2)

HSP 1 Score: 75.1 bits (183), Expect = 1.700e-14
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  130 ADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVV 276
            A+ C ICL E++DGE +R++P CDHRFHA CI+ WLR    CP C+RV+
Sbjct:   91 AEECAICLVEFEDGETVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVL 139          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A8I6XFS6_HORVV (RING-type domain-containing protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XFS6_HORVV)

HSP 1 Score: 75.1 bits (183), Expect = 2.360e-14
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  112 AVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCK 267
            A GG T  MC ICL EY DGE LR++P C HRFH  C++ WLR  G CP+C+
Sbjct:  117 AAGGDT--MCSICLSEYMDGEMLRLMPECRHRFHVMCLDAWLRRSGSCPVCR 166          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A6G1FAM0_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1FAM0_9ORYZ)

HSP 1 Score: 75.9 bits (185), Expect = 3.280e-14
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  109 DAVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVV 276
            D    + A+ C ICL E++DG+ +R++P CDHRFHA CI+ WLR    CP C+RV+
Sbjct:  166 DKAADAEAEECAICLVEFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVL 221          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A811SRU7_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811SRU7_9POAL)

HSP 1 Score: 75.5 bits (184), Expect = 4.120e-14
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  103 EDDAVGGSTADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVV 276
            E+   G    D+C ICLGE+ DG+ +R++P C H FH PC++ WL  +G CP C+R V
Sbjct:  126 EETGAGDQDEDVCAICLGEFADGDKVRVLPRCGHGFHVPCVDAWLLSRGSCPTCRRPV 183          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A5J9SRT8_9POAL (RING-type domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9SRT8_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 4.670e-14
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  121 GSTAD-MCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCK 267
            G+ AD MC ICL EY+DGE LR++P C HRFH  C++ WLR  G CP+C+
Sbjct:  117 GADADGMCSICLSEYRDGEMLRVMPECRHRFHVACLDAWLRRNGSCPVCR 166          
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Match: A0A0D9VJL5_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VJL5_9ORYZ)

HSP 1 Score: 74.3 bits (181), Expect = 5.020e-14
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  130 ADMCCICLGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVV 276
            ++ C ICL E++DGE +R++P CDHRFHA CI+ WLR    CP C+RV+
Sbjct:  105 SEECAICLVEFEDGEAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVL 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5317.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B6SLM8_MAIZE1.640e-1646.77Putative RING zinc finger domain superfamily prote... [more]
A0A3L6T2V6_PANMI2.210e-1647.62RING-H2 finger protein ATL74-like n=2 Tax=Panicum ... [more]
A0A0E0K3Q8_ORYPU4.470e-1653.57RING-type domain-containing protein n=6 Tax=Oryza ... [more]
A0A811RW73_9POAL1.120e-1448.28Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI001ADA00D21.700e-1457.14RING-H2 finger protein ATL80-like n=1 Tax=Oryza br... [more]
A0A8I6XFS6_HORVV2.360e-1457.69RING-type domain-containing protein n=2 Tax=Hordeu... [more]
A0A6G1FAM0_9ORYZ3.280e-1450.00RING-type domain-containing protein n=1 Tax=Oryza ... [more]
A0A811SRU7_9POAL4.120e-1446.55Hypothetical protein n=2 Tax=Miscanthus lutariorip... [more]
A0A5J9SRT8_9POAL4.670e-1458.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A0D9VJL5_9ORYZ5.020e-1455.10RING-type domain-containing protein n=1 Tax=Leersi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5317contigP-wetherbeei_contig5317:47..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4577.GRMZM2G390436_P01
PFAMszf-RING_2
Model size345
Max annot lvl35493|Streptophyta
KEGG koko:K19040
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue2.68e-17
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37Q47@33090|Viridiplantae,3GCXD@35493|Streptophyta,3M6FT@4447|Liliopsida,3IHR0@38820|Poales
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-21_005940.1
EC2.3.2.27
DescriptionRING-like zinc finger
Cds size345
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.3336294-CDS-P-wetherbeei_contig5317:46..3911683186796.3336294-CDS-P-wetherbeei_contig5317:46..391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5317 47..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5317.1.1prot_P-wetherbeei_contig5317.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5317 47..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5317.1.1

>prot_P-wetherbeei_contig5317.1.1 ID=prot_P-wetherbeei_contig5317.1.1|Name=mRNA_P-wetherbeei_contig5317.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
GGSGAVAAAAVTNAAAATNAAAATNAAAASPAREEDDAVGGSTADMCCIC
LGEYQDGECLRIIPTCDHRFHAPCIEEWLREKGLCPMCKRVVHEATSGGC
CQSGGGGGGGDSRRR
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mRNA from alignment at P-wetherbeei_contig5317:47..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5317.1.1 ID=mRNA_P-wetherbeei_contig5317.1.1|Name=mRNA_P-wetherbeei_contig5317.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig5317:47..391+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCAGCGGTGCAGTCGCCGCTGCCGCCGTCACCAACGCAGCCGCCGC CACCAACGCAGCCGCCGCCACCAACGCAGCCGCCGCAAGTCCAGCGAGGG AGGAAGACGACGCGGTCGGCGGCAGCACGGCCGACATGTGCTGCATCTGC CTCGGCGAGTACCAGGACGGCGAGTGCCTCCGCATCATCCCTACCTGCGA CCACCGCTTTCACGCGCCGTGCATCGAGGAGTGGTTGAGAGAAAAAGGGT TGTGTCCAATGTGCAAGCGAGTCGTCCACGAGGCGACTTCGGGGGGCTGC TGCCAAAGCGGCGGCGGCGGCGGCGGCGGCGACAGCCGCCGTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5317:47..391+

>mRNA_P-wetherbeei_contig5317.1.1 ID=mRNA_P-wetherbeei_contig5317.1.1|Name=mRNA_P-wetherbeei_contig5317.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig5317:47..391+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCAGCGGTGCAGTCGCCGCTGCCGCCGTCACCAACGCAGCCGCCGC
CACCAACGCAGCCGCCGCCACCAACGCAGCCGCCGCAAGTCCAGCGAGGG
AGGAAGACGACGCGGTCGGCGGCAGCACGGCCGACATGTGCTGCATCTGC
CTCGGCGAGTACCAGGACGGCGAGTGCCTCCGCATCATCCCTACCTGCGA
CCACCGCTTTCACGCGCCGTGCATCGAGGAGTGGTTGAGAGAAAAAGGGT
TGTGTCCAATGTGCAAGCGAGTCGTCCACGAGGCGACTTCGGGGGGCTGC
TGCCAAAGCGGCGGCGGCGGCGGCGGCGGCGACAGCCGCCGTCGC
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