mRNA_P-wetherbeei_contig53146.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53146.1.1
Unique NamemRNA_P-wetherbeei_contig53146.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A835YR28_9STRA (Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR28_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.930e-40
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GHD+CGGSIS MFGFFFAKGPV SFEDA  +D +KFGRWHRAMLE+GVYLAPSQYEAGF S+AHTE DID TIAAAKDV+SSL
Sbjct:  395 GHDVCGGSISGMFGFFFAKGPVYSFEDAQTSDLAKFGRWHRAMLEKGVYLAPSQYEAGFTSLAHTEADIDATIAAAKDVMSSL 477          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A7S3TAB5_9SPIT (Hypothetical protein n=2 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TAB5_9SPIT)

HSP 1 Score: 135 bits (341), Expect = 6.700e-39
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GHD+CG SIS MFGFFF KGPV  F DA  +D  KFGRWHRAML RGVYLAPSQYEAGFMS+AHTE+D+D+TI AAK+V + L
Sbjct:   92 GHDLCGSSISGMFGFFFCKGPVTCFADATKSDTEKFGRWHRAMLNRGVYLAPSQYEAGFMSLAHTEEDVDQTIQAAKEVFAEL 174          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: L1IC05_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IC05_GUITC)

HSP 1 Score: 131 bits (329), Expect = 6.630e-38
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GH++CGGSIS MFGFFF KGPV +F+DA  +D +KF RWHRAMLE GVYLAPSQ+EAGFMS+AHT++DID TIAAAK V + +
Sbjct:   28 GHEVCGGSISGMFGFFFCKGPVNNFKDAMKSDTAKFARWHRAMLEEGVYLAPSQFEAGFMSLAHTDEDIDRTIAAAKRVFAKI 110          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A7R9YGA8_9STRA (Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGA8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.830e-36
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GHD+CGGSIS MFGFFF KGPV  F DAA +D  KFGRWHR MLERGVYLAPSQYEAGF S+AHTE+D+D TIAAAK+V + L
Sbjct:  380 GHDVCGGSISGMFGFFFTKGPVSCFADAAQSDTEKFGRWHRMMLERGVYLAPSQYEAGFTSLAHTEEDVDATIAAAKEVFALL 462          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A7S3K027_9STRA (Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K027_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.990e-36
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GH++CGGSIS MFGFFF +GPV +F+DA A+D  KFG+WHRAM+ERG+YLAPSQYEAGFMS+AHT+ DID TIAAAKDV  ++
Sbjct:  385 GHEICGGSISGMFGFFFCQGPVNNFKDATASDTEKFGKWHRAMIERGIYLAPSQYEAGFMSLAHTDADIDATIAAAKDVFENV 467          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A7S2SV43_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV43_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.390e-36
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GH +CGG IS MFGFFF +GPV  FEDA+ +D  KFG WHR MLERG+YLAPSQYEAGF S+AHTE+D+D TIAAA++V ++L
Sbjct:   54 GHAVCGGHISGMFGFFFTEGPVNCFEDASKSDTEKFGLWHRGMLERGIYLAPSQYEAGFTSIAHTEEDVDATIAAAREVFATL 136          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A8J5XM80_DIALT (Glutamate-1-semialdehyde 2,1-aminomutase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XM80_DIALT)

HSP 1 Score: 135 bits (341), Expect = 3.620e-36
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDV 237
            GHDMCGG++S MFG FF KGPV +FEDA  +D +KF RWHRAMLERGVYLAPSQYEAGFMS AHTE+DID+TIAAA++V
Sbjct:  381 GHDMCGGNVSGMFGIFFCKGPVKNFEDATKSDTAKFARWHRAMLERGVYLAPSQYEAGFMSTAHTEEDIDKTIAAAREV 459          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A4D9CTB3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTB3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.820e-36
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GH +CGG +S MFGFFF +GPV  F DAA +D +KF +WHR MLE GVYLAPSQYEAGFMS+AHTE DID TIAAAK+V  +L
Sbjct:   58 GHAICGGHVSGMFGFFFTEGPVRCFTDAAKSDTAKFAKWHRGMLEHGVYLAPSQYEAGFMSLAHTEADIDATIAAAKEVFKTL 140          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A7S4DPW4_9EUKA (Glutamate-1-semialdehyde 2,1-aminomutase n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DPW4_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 1.160e-35
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GH++CGG IS MFGFFF KGPV  F DAA +D  KF RWHR MLERG+YLAPSQYEAGFMS+AHTE+DID TIAAAK+V ++L
Sbjct:  421 GHEVCGGHISGMFGFFFTKGPVSCFADAAKSDTEKFARWHRGMLERGIYLAPSQYEAGFMSLAHTEEDIDNTIAAAKEVFATL 503          
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Match: A0A7S3FSV5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FSV5_9SPIT)

HSP 1 Score: 126 bits (317), Expect = 1.270e-35
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 GHDMCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPSQYEAGFMSMAHTEKDIDETIAAAKDVLSSL 249
            GH +CGGSIS MFGFFF +GPV  FE+A A+D  KFGRWHR MLE+GVYLAPSQYEAGF S+ HTE DI+ TI AA+ V+ SL
Sbjct:   62 GHAVCGGSISGMFGFFFCEGPVTCFEEATASDTEKFGRWHRGMLEQGVYLAPSQYEAGFTSLQHTEADIERTIEAARVVMKSL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53146.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YR28_9STRA1.930e-4083.13Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=T... [more]
A0A7S3TAB5_9SPIT6.700e-3973.49Hypothetical protein n=2 Tax=Strombidinopsis acumi... [more]
L1IC05_GUITC6.630e-3871.08Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7R9YGA8_9STRA1.830e-3675.90Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=P... [more]
A0A7S3K027_9STRA1.990e-3672.29Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=A... [more]
A0A7S2SV43_9STRA3.390e-3668.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XM80_DIALT3.620e-3677.22Glutamate-1-semialdehyde 2,1-aminomutase n=2 Tax=D... [more]
A0A4D9CTB3_9STRA3.820e-3669.88Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4DPW4_9EUKA1.160e-3573.49Glutamate-1-semialdehyde 2,1-aminomutase n=3 Tax=L... [more]
A0A7S3FSV5_9SPIT1.270e-3569.88Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53146contigP-wetherbeei_contig53146:285..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3075.A0A087SD07
Preferred nameHEML
PFAMsAminotran_3
Model size252
Max annot lvl3041|Chlorophyta
KEGG rclassRC00677
KEGG koko:K01845
KEGG ReactionR02272
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons1
Evalue1.82e-32
EggNOG OGsCOG0702@1|root,COG4992@1|root,KOG1203@2759|Eukaryota,KOG1401@2759|Eukaryota,37NS6@33090|Viridiplantae,34GPP@3041|Chlorophyta
EC5.4.3.8
DescriptionBelongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Cds size243
COG categoryE
BiGG ReactioniRC1080.CRv4_Au5_s3_g10316_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.9541705-CDS-P-wetherbeei_contig53146:284..5271683186795.9541705-CDS-P-wetherbeei_contig53146:284..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53146 285..527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.9781651-UTR-P-wetherbeei_contig53146:527..5361683186795.9781651-UTR-P-wetherbeei_contig53146:527..536Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53146 528..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53146.1.1prot_P-wetherbeei_contig53146.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53146 285..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53146.1.1

>prot_P-wetherbeei_contig53146.1.1 ID=prot_P-wetherbeei_contig53146.1.1|Name=mRNA_P-wetherbeei_contig53146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MCGGSISAMFGFFFAKGPVLSFEDAAAADASKFGRWHRAMLERGVYLAPS
QYEAGFMSMAHTEKDIDETIAAAKDVLSSL*
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mRNA from alignment at P-wetherbeei_contig53146:285..536-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53146.1.1 ID=mRNA_P-wetherbeei_contig53146.1.1|Name=mRNA_P-wetherbeei_contig53146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig53146:285..536- (Phaeothamnion wetherbeei SAG_119_79)
GGCCACGACATGTGCGGCGGCTCCATCTCGGCCATGTTCGGCTTCTTCTT CGCCAAGGGCCCAGTCCTCTCCTTCGAGGACGCTGCCGCCGCCGACGCCA GCAAGTTCGGGCGATGGCACCGCGCTATGCTCGAGCGGGGCGTCTACCTC GCGCCCAGCCAGTACGAGGCAGGCTTCATGTCGATGGCGCACACAGAGAA GGACATTGACGAGACCATCGCCGCCGCCAAGGATGTCCTCTCGAGCCTTT AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53146:285..536-

>mRNA_P-wetherbeei_contig53146.1.1 ID=mRNA_P-wetherbeei_contig53146.1.1|Name=mRNA_P-wetherbeei_contig53146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig53146:285..536- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGGCGGCTCCATCTCGGCCATGTTCGGCTTCTTCTTCGCCAAGGG
CCCAGTCCTCTCCTTCGAGGACGCTGCCGCCGCCGACGCCAGCAAGTTCG
GGCGATGGCACCGCGCTATGCTCGAGCGGGGCGTCTACCTCGCGCCCAGC
CAGTACGAGGCAGGCTTCATGTCGATGGCGCACACAGAGAAGGACATTGA
CGAGACCATCGCCGCCGCCAAGGATGTCCTCTCGAGCCTTTAA
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