mRNA_P-wetherbeei_contig5314.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5314.2.1
Unique NamemRNA_P-wetherbeei_contig5314.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5314.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5314contigP-wetherbeei_contig5314:1438..2354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.7937746-CDS-P-wetherbeei_contig5314:1437..15151683186795.7937746-CDS-P-wetherbeei_contig5314:1437..1515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5314 1438..1515 +
1683186795.8038602-CDS-P-wetherbeei_contig5314:1742..20481683186795.8038602-CDS-P-wetherbeei_contig5314:1742..2048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5314 1743..2048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.8126335-UTR-P-wetherbeei_contig5314:2048..23541683186795.8126335-UTR-P-wetherbeei_contig5314:2048..2354Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5314 2049..2354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5314.2.1prot_P-wetherbeei_contig5314.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5314 1438..2048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5314.2.1

>prot_P-wetherbeei_contig5314.2.1 ID=prot_P-wetherbeei_contig5314.2.1|Name=mRNA_P-wetherbeei_contig5314.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
RHLCFHTCRFEEAGALLCKPDGERIEGVGTFFGSLFGFASWIFLSTKGSR
GGFVEWPSALPGVAFGTSVGVLAANTSGEGRRLPLSLFSKVLGAAVGGVW
AAGMTTSSLHLNVSFGRPRRQPVSQSF*
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mRNA from alignment at P-wetherbeei_contig5314:1438..2354+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5314.2.1 ID=mRNA_P-wetherbeei_contig5314.2.1|Name=mRNA_P-wetherbeei_contig5314.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=917bp|location=Sequence derived from alignment at P-wetherbeei_contig5314:1438..2354+ (Phaeothamnion wetherbeei SAG_119_79)
AGACATCTTTGCTTCCACACCTGCCGCTTTGAAGAAGCTGGAGCACTGCT
TTGCAAGCCCGATGGGGAAAGAATCGAGGTTAGCTGATGACGAGGACGAA
GAAGAGGCTGTTATGTACGCGCCGTGCTGGTTGGGCCAAATGGTACGCAT
GAGATGGAAAGAATGCTTGTTTTCTCCGCGCTTTCTCTTTCCCATTCTGT
TTCAAAAACACGCTGAGCATGCGATTTTCCTCTTTTCTTGCTGCGTTCCC
GTTCTTGCCGAAGTTTGTTCTTTACGATGCATTACTTGTGCGCACTTTCC
CGCAGGGCGTGGGCACCTTCTTCGGCTCTCTCTTTGGCTTTGCGTCATGG
ATCTTTCTTTCGACAAAGGGCAGCCGCGGCGGCTTCGTCGAGTGGCCGTC
TGCTCTGCCGGGTGTGGCATTCGGAACTTCTGTAGGAGTTCTTGCAGCGA
ACACATCTGGCGAAGGAAGGCGGCTGCCTCTCTCTTTGTTTTCTAAGGTG
CTCGGCGCCGCGGTTGGCGGAGTGTGGGCAGCGGGCATGACCACTTCCAG
CCTTCACCTCAACGTAAGCTTTGGGAGGCCACGGAGGCAACCGGTTTCTC
AGAGCTTTTAAACCGAAGCGTGCGCTCGTGTTTTGCAGACCACCGTTTTA
TCTTGGCCCCTCGTTTTTTGCGGACTTGCGCTCTGGAGTTCGATTTCTCT
TCTGCATGCTAGAGTGCGCCTTTCGTAGAGCGATGCTGCAAGCAGGTACA
GCTGTTTCACATAGACTTTGAAATCGGTGCAGCATGTTCACGAGTTCACA
TGTGTCGGAAACCTTAAAAACCGATACAGATTGGGTCAGGCATCGTTGTC
CTCTCGGCATCTGCCACCGCCGCCGCCACGGCTGCGTTCACGGCATTCGC
GCCTTCTTCTCGGGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5314:1438..2354+

>mRNA_P-wetherbeei_contig5314.2.1 ID=mRNA_P-wetherbeei_contig5314.2.1|Name=mRNA_P-wetherbeei_contig5314.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig5314:1438..2354+ (Phaeothamnion wetherbeei SAG_119_79)
AGACATCTTTGCTTCCACACCTGCCGCTTTGAAGAAGCTGGAGCACTGCT
TTGCAAGCCCGATGGGGAAAGAATCGAGGGCGTGGGCACCTTCTTCGGCT
CTCTCTTTGGCTTTGCGTCATGGATCTTTCTTTCGACAAAGGGCAGCCGC
GGCGGCTTCGTCGAGTGGCCGTCTGCTCTGCCGGGTGTGGCATTCGGAAC
TTCTGTAGGAGTTCTTGCAGCGAACACATCTGGCGAAGGAAGGCGGCTGC
CTCTCTCTTTGTTTTCTAAGGTGCTCGGCGCCGCGGTTGGCGGAGTGTGG
GCAGCGGGCATGACCACTTCCAGCCTTCACCTCAACGTAAGCTTTGGGAG
GCCACGGAGGCAACCGGTTTCTCAGAGCTTTTAA
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