mRNA_P-wetherbeei_contig5312.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5312.1.1
Unique NamemRNA_P-wetherbeei_contig5312.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5312.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5312contigP-wetherbeei_contig5312:34..2979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2234
Hectar predicted targeting categoryother localisation
Exons4
Cds size2034
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5312.1.1prot_P-wetherbeei_contig5312.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5312 206..2951 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.635248-UTR-P-wetherbeei_contig5312:33..2051683186795.635248-UTR-P-wetherbeei_contig5312:33..205Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5312 34..205 -
1683186795.6975527-UTR-P-wetherbeei_contig5312:2951..29791683186795.6975527-UTR-P-wetherbeei_contig5312:2951..2979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5312 2952..2979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.647346-CDS-P-wetherbeei_contig5312:205..5531683186795.647346-CDS-P-wetherbeei_contig5312:205..553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5312 206..553 -
1683186795.6604419-CDS-P-wetherbeei_contig5312:768..8891683186795.6604419-CDS-P-wetherbeei_contig5312:768..889Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5312 769..889 -
1683186795.6735413-CDS-P-wetherbeei_contig5312:1156..12821683186795.6735413-CDS-P-wetherbeei_contig5312:1156..1282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5312 1157..1282 -
1683186795.6847768-CDS-P-wetherbeei_contig5312:1512..29511683186795.6847768-CDS-P-wetherbeei_contig5312:1512..2951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5312 1513..2951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5312.1.1

>prot_P-wetherbeei_contig5312.1.1 ID=prot_P-wetherbeei_contig5312.1.1|Name=mRNA_P-wetherbeei_contig5312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=678bp
MDSDDDVVVRPSSSQRRKRVAKLDSDESEEETAQRRPPLGRQRRKVIQDD
SDDDALIVLAANGSGGGGGSTAAPSKKFQKSRRKIVEKSDNESEEVLATP
AAAAALSRPQRRKTPAFTARKRTVNDSDSSGPEGPPPPRNFWATRSSSAP
GVSKFINEPSGKDADDGSSGEEDLAAFLAADDEIEYEDNGSDEEKENKRS
ERASKSKGKQRKKPQAPAVATSPPSTGRRSAAAGASGSKKKKTAAKSRHG
SGSHYDSDDCGSSAASSSSSSSSSSSAEGGDDDDDDEGGGADDIALARSL
DLEDACAADMYGGSMFVDNAGMMTQEEAFEVYIEYIARCVEDLPVATAEE
DDEEEESGSDGGDGGGGRKSCGGDGGKESGDGGCTAGSSSDAKKGGGSGG
RGSQTAGEGRGAAFRRDMALHPRSDANRRYTAAIRKVENRLTVLRESHTG
TLARSQDTVTALQERPFFCDEAVVHPYHDKCYACHREQRILQLVTTWGPP
YRGDPRRMWGSGHDWPDLMPARWNDHRWMAKEERSSTDSETHGVGITCMY
KSRIWHALFHFKLHLARRVHLEMLSRPRPNKLLPGQSLVGSKFLRRDTDW
VDFLCDAAEKAGLKSNLEYIEDARWVMANGGMTAGALERWIRGSGTWVRH
GVQFDSDGNEEDEDEDDFAVMRAVDDF*
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mRNA from alignment at P-wetherbeei_contig5312:34..2979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5312.1.1 ID=mRNA_P-wetherbeei_contig5312.1.1|Name=mRNA_P-wetherbeei_contig5312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2946bp|location=Sequence derived from alignment at P-wetherbeei_contig5312:34..2979- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGAGATTTTCGGCAGCGAAATGAGATGGACTCAGACGACGACGTAG
TGGTTCGACCTTCGTCATCCCAACGCCGAAAGCGCGTAGCGAAGCTGGAC
TCAGATGAATCGGAGGAGGAGACAGCCCAACGAAGGCCACCGCTGGGGAG
GCAACGACGAAAGGTGATCCAGGACGATTCGGACGATGATGCGCTAATTG
TGCTGGCGGCCAACGGCAGTGGTGGCGGCGGCGGTAGCACGGCTGCACCG
TCGAAGAAGTTTCAAAAATCGCGTCGCAAGATTGTTGAAAAGAGCGATAA
CGAAAGCGAGGAGGTTCTCGCTACCCCGGCGGCTGCAGCTGCACTATCAC
GACCCCAACGCCGAAAAACACCGGCCTTCACAGCGCGCAAGCGGACTGTT
AATGATTCTGACTCTTCCGGACCAGAGGGGCCGCCTCCTCCACGGAACTT
CTGGGCGACGCGCAGCAGCAGCGCTCCAGGCGTCAGCAAGTTCATTAATG
AACCGAGCGGCAAGGACGCCGACGATGGCTCTTCGGGAGAGGAGGACTTG
GCCGCCTTCCTTGCTGCCGATGATGAGATCGAGTACGAAGACAACGGCAG
CGACGAGGAGAAGGAGAACAAGCGGAGCGAAAGAGCGAGCAAGAGCAAGG
GCAAGCAGCGGAAAAAGCCTCAGGCCCCCGCAGTCGCCACGTCGCCTCCC
TCCACCGGCCGGCGCAGTGCTGCCGCCGGAGCGAGCGGCAGCAAGAAGAA
GAAAACGGCTGCCAAGAGCCGGCACGGGAGCGGAAGCCACTACGACTCGG
ACGACTGCGGCTCGTCGGCGGCGTCATCCTCCTCCTCCTCCTCCTCTTCC
TCCTCTGCAGAGGGCGGAGACGACGACGATGACGATGAAGGCGGTGGCGC
TGACGATATTGCCCTGGCACGGAGCCTCGACCTGGAGGACGCCTGCGCTG
CCGACATGTACGGCGGGTCGATGTTCGTCGATAACGCCGGCATGATGACG
CAGGAGGAGGCGTTCGAGGTTTACATTGAGTACATTGCCCGCTGCGTCGA
AGACTTGCCCGTCGCGACCGCGGAGGAGGACGACGAGGAGGAGGAGAGTG
GCAGCGACGGCGGCGACGGCGGCGGCGGCAGGAAGAGCTGTGGCGGTGAC
GGCGGCAAGGAGAGCGGCGATGGCGGCTGCACTGCTGGCAGCAGTAGTGA
TGCTAAGAAGGGCGGCGGCAGCGGCGGCCGCGGCAGCCAGACGGCAGGCG
AGGGCCGCGGCGCCGCCTTTCGAAGGGACATGGCACTGCACCCACGGAGC
GACGCAAACAGGCGCTACACGGCAGCCATCCGCAAGGTGGAGAACCGGCT
GACGGTGCTGCGCGAATCGCACACCGGCACGCTCGCCCGCAGTCAGGACA
CCGTCACGGCGCTGCAGGAGCGCCCCTTCTTCTGCGACGAGGCAGTCGTG
CACCCCTACCACGACAAGTGAGGGATACGGCCAGTTCGGCTGGCCGTCCG
TTCTTGTTCGGATGTTGTTGCCTGCTGTTTACGAATCGTCGCGGTTCGTG
ATCCTTGCGATGCCAGTAGCGGTTTCGTTTGTCGCAGTCTGCTGTGCTTC
TTTTGTTTATTGTGTGCTGAGACGTTCTAGCTTTGGTAATGCGCTAAACC
CACGCGGTGCTCTCTAAAATGTCACCGCAATGTCTTTGTGTCTGTAGGTG
CTACGCCTGCCACCGGGAACAGCGCATCCTGCAGCTCGTCACGACGTGGG
GTCCGCCATACCGAGGCGACCCGCGCAGGATGTGGGGCAGCGGCCACGAC
TGGCCCGACCTCATGCCCGCTCGGTGAGCGGAACAATCTTGACTGCAAGT
ATGGCCGTGCAGAATCTTGGGAACTCTTACAACGGTTCTGTGGAGGTTTT
ACGATTCGGCGTCATTTTTGTAAAGAGTGGCAAACTTGTGGTTTTCCACG
TTTTCGCTGCGCATTAGTTTCAGATGGAAGCCTTGCGAACAGCTTCCTTG
AAATCAAATCGGAGCTGTATATGTTTCATGGTTCCTTTACATATCACTGA
TAACTCGATGCGCTCTTCCACTCTTGCGGTTCGTCGCCAGATGGAACGAC
CACAGGTGGATGGCGAAAGAGGAGCGCAGCAGCACTGACTCGGAGACGCA
CGGCGTCGGCATCACCTGCATGTACAAGAGCCGCATCTGGCACGCGCTCT
TTCACTTCAAGGTGAGCAGAGCCGATTTGACGGCGTTGTCAGGTCAGTTG
CAACACTGGTAAGGCGGAAGAAGTGTTCATGAACACAGCTCTGTTCTTTC
CATTGACTGCCTTGTGAAAGGTCAACGTCTGCGTGCCACCAACCCTGCCC
ATTTAGCGCTGTTCACCTCTGGCATCTGCATATCTTTATTTCCTTCTCTG
CTTTGCTTTTACATTGTGCACCGCAGCTGCACCTGGCGCGCCGCGTGCAC
CTGGAGATGTTGTCCCGTCCGCGGCCGAACAAGCTCCTGCCGGGGCAGTC
CCTCGTCGGCTCCAAGTTCCTGCGGCGCGATACGGACTGGGTAGACTTTC
TGTGCGACGCTGCCGAAAAGGCGGGCTTGAAGAGCAACCTCGAGTACATC
GAGGATGCCCGCTGGGTTATGGCCAACGGCGGCATGACGGCGGGCGCGCT
GGAGCGCTGGATCCGCGGGAGCGGGACGTGGGTGCGGCACGGCGTCCAGT
TCGACTCGGACGGCAACGAGGAGGACGAAGACGAGGATGACTTCGCGGTG
ATGCGGGCAGTGGACGACTTTTGAGGAGTTTGAGGCTCGGAACTGTAGGA
GCAGCTAGCTGGGTGGCGGTTAGTGGTTGCTGGAAGTGGCGTGGTTGGCC
TGCTGCGGTTGAGCTGACATTGAGGTTGCAGAAGGTATAGAAAGACGGGG
ACTTCAGGAAAAGAAGAAAGTGAGAATATATATATCATTGCCTGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5312:34..2979-

>mRNA_P-wetherbeei_contig5312.1.1 ID=mRNA_P-wetherbeei_contig5312.1.1|Name=mRNA_P-wetherbeei_contig5312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2034bp|location=Sequence derived from alignment at P-wetherbeei_contig5312:34..2979- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTCAGACGACGACGTAGTGGTTCGACCTTCGTCATCCCAACGCCG
AAAGCGCGTAGCGAAGCTGGACTCAGATGAATCGGAGGAGGAGACAGCCC
AACGAAGGCCACCGCTGGGGAGGCAACGACGAAAGGTGATCCAGGACGAT
TCGGACGATGATGCGCTAATTGTGCTGGCGGCCAACGGCAGTGGTGGCGG
CGGCGGTAGCACGGCTGCACCGTCGAAGAAGTTTCAAAAATCGCGTCGCA
AGATTGTTGAAAAGAGCGATAACGAAAGCGAGGAGGTTCTCGCTACCCCG
GCGGCTGCAGCTGCACTATCACGACCCCAACGCCGAAAAACACCGGCCTT
CACAGCGCGCAAGCGGACTGTTAATGATTCTGACTCTTCCGGACCAGAGG
GGCCGCCTCCTCCACGGAACTTCTGGGCGACGCGCAGCAGCAGCGCTCCA
GGCGTCAGCAAGTTCATTAATGAACCGAGCGGCAAGGACGCCGACGATGG
CTCTTCGGGAGAGGAGGACTTGGCCGCCTTCCTTGCTGCCGATGATGAGA
TCGAGTACGAAGACAACGGCAGCGACGAGGAGAAGGAGAACAAGCGGAGC
GAAAGAGCGAGCAAGAGCAAGGGCAAGCAGCGGAAAAAGCCTCAGGCCCC
CGCAGTCGCCACGTCGCCTCCCTCCACCGGCCGGCGCAGTGCTGCCGCCG
GAGCGAGCGGCAGCAAGAAGAAGAAAACGGCTGCCAAGAGCCGGCACGGG
AGCGGAAGCCACTACGACTCGGACGACTGCGGCTCGTCGGCGGCGTCATC
CTCCTCCTCCTCCTCCTCTTCCTCCTCTGCAGAGGGCGGAGACGACGACG
ATGACGATGAAGGCGGTGGCGCTGACGATATTGCCCTGGCACGGAGCCTC
GACCTGGAGGACGCCTGCGCTGCCGACATGTACGGCGGGTCGATGTTCGT
CGATAACGCCGGCATGATGACGCAGGAGGAGGCGTTCGAGGTTTACATTG
AGTACATTGCCCGCTGCGTCGAAGACTTGCCCGTCGCGACCGCGGAGGAG
GACGACGAGGAGGAGGAGAGTGGCAGCGACGGCGGCGACGGCGGCGGCGG
CAGGAAGAGCTGTGGCGGTGACGGCGGCAAGGAGAGCGGCGATGGCGGCT
GCACTGCTGGCAGCAGTAGTGATGCTAAGAAGGGCGGCGGCAGCGGCGGC
CGCGGCAGCCAGACGGCAGGCGAGGGCCGCGGCGCCGCCTTTCGAAGGGA
CATGGCACTGCACCCACGGAGCGACGCAAACAGGCGCTACACGGCAGCCA
TCCGCAAGGTGGAGAACCGGCTGACGGTGCTGCGCGAATCGCACACCGGC
ACGCTCGCCCGCAGTCAGGACACCGTCACGGCGCTGCAGGAGCGCCCCTT
CTTCTGCGACGAGGCAGTCGTGCACCCCTACCACGACAAGTGCTACGCCT
GCCACCGGGAACAGCGCATCCTGCAGCTCGTCACGACGTGGGGTCCGCCA
TACCGAGGCGACCCGCGCAGGATGTGGGGCAGCGGCCACGACTGGCCCGA
CCTCATGCCCGCTCGATGGAACGACCACAGGTGGATGGCGAAAGAGGAGC
GCAGCAGCACTGACTCGGAGACGCACGGCGTCGGCATCACCTGCATGTAC
AAGAGCCGCATCTGGCACGCGCTCTTTCACTTCAAGCTGCACCTGGCGCG
CCGCGTGCACCTGGAGATGTTGTCCCGTCCGCGGCCGAACAAGCTCCTGC
CGGGGCAGTCCCTCGTCGGCTCCAAGTTCCTGCGGCGCGATACGGACTGG
GTAGACTTTCTGTGCGACGCTGCCGAAAAGGCGGGCTTGAAGAGCAACCT
CGAGTACATCGAGGATGCCCGCTGGGTTATGGCCAACGGCGGCATGACGG
CGGGCGCGCTGGAGCGCTGGATCCGCGGGAGCGGGACGTGGGTGCGGCAC
GGCGTCCAGTTCGACTCGGACGGCAACGAGGAGGACGAAGACGAGGATGA
CTTCGCGGTGATGCGGGCAGTGGACGACTTTTGA
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