mRNA_P-wetherbeei_contig53110.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53110.1.1
Unique NamemRNA_P-wetherbeei_contig53110.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53110.1.1 vs. uniprot
Match: UPI001BCA9184 (hypothetical protein n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCA9184)

HSP 1 Score: 73.6 bits (179), Expect = 1.850e-14
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:    1 MVGRPKRALDAQLAAELCARRIDAKISNAVMARHLGVATTTLTRSLKENSFSEDLGERVRAMLADPAAFELRKTLPEAVGDERALSVKDVQVLQKFAGLLPLAEAIIKNLVE 336
            M GRPKR  D  LA +    R +A ++ +  A  LGVA +TLTRSLKE  FS D+ +R+R ++ +     L + +  +    R LS+KD+++L +F  L+P AEAI+K++++
Sbjct:    1 MAGRPKRVPDPDLALKFHEWRSNAGLTVSATAGRLGVAPSTLTRSLKEGGFSFDMHQRLRRLI-ERGETVLTEDIALSAQAIRLLSIKDLRLLHEFVNLIPKAEAILKSVLD 111
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BLAST of mRNA_P-wetherbeei_contig53110.1.1 vs. uniprot
Match: UPI001FF9D41C (hypothetical protein n=1 Tax=Bradyrhizobium sp. 164 TaxID=2782637 RepID=UPI001FF9D41C)

HSP 1 Score: 67.0 bits (162), Expect = 6.600e-12
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 MVGRPKRALDAQLAAELCARRIDAKISNAVMARHLGVATTTLTRSLKENSFSEDLGERVRAML-ADPAAFELRKTLPEAVGDERALSVKDVQVLQKFAGLLPLAEAIIKNLVE 336
            M GRPKR  D  LA +    R DA ++ +  A  L +A +TLTRSLK +SFS DL  R++ ++     A     +      D  ALS+KD+ +L +F  L+P AEAI+K++++
Sbjct:    1 MAGRPKRIPDPDLAKKFHDWRSDAGLTVSAAAGRLDIAPSTLTRSLKSDSFSFDLQRRLKRLIEGGSGAPSWAASAARPAFD--ALSIKDLHLLHEFVNLIPKAEAILKSVLD 111
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BLAST of mRNA_P-wetherbeei_contig53110.1.1 vs. uniprot
Match: UPI001BAE3473 (hypothetical protein n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BAE3473)

HSP 1 Score: 63.9 bits (154), Expect = 8.830e-11
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   61 RIDAKISNAVMARHLGVATTTLTRSLKENSFSEDLGERVRAMLADPAAFE--LRKTLPEAVGDERALSVKDVQVLQKFAGLLPLAEAIIKNLVE 336
            R DA ++ +  A  LGVA +TLTRSLKE SFS D+ ER++ M+   AA           AVG    LS+ D+++L +F  L+P AEAI+K++++
Sbjct:   14 RSDAGLTVSAAAGRLGVAPSTLTRSLKEESFSFDVRERLKRMMEREAAAVSGAAAVAKPAVG---RLSINDLRLLHEFVNLIPKAEAILKSVLD 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001BCA91841.850e-1439.29hypothetical protein n=1 Tax=Bradyrhizobium sp. dw... [more]
UPI001FF9D41C6.600e-1238.94hypothetical protein n=1 Tax=Bradyrhizobium sp. 16... [more]
UPI001BAE34738.830e-1142.55hypothetical protein n=1 Tax=Bradyrhizobium liaoni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53110contigP-wetherbeei_contig53110:105..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.6055477-CDS-P-wetherbeei_contig53110:104..4611683186795.6055477-CDS-P-wetherbeei_contig53110:104..461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53110 105..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53110.1.1prot_P-wetherbeei_contig53110.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53110 105..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53110.1.1

>prot_P-wetherbeei_contig53110.1.1 ID=prot_P-wetherbeei_contig53110.1.1|Name=mRNA_P-wetherbeei_contig53110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MVGRPKRALDAQLAAELCARRIDAKISNAVMARHLGVATTTLTRSLKENS
FSEDLGERVRAMLADPAAFELRKTLPEAVGDERALSVKDVQVLQKFAGLL
PLAEAIIKNLVERTGAKE*
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mRNA from alignment at P-wetherbeei_contig53110:105..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53110.1.1 ID=mRNA_P-wetherbeei_contig53110.1.1|Name=mRNA_P-wetherbeei_contig53110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig53110:105..461+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGGACGCCCTAAAAGAGCTTTAGATGCGCAACTCGCAGCCGAACT
TTGCGCTCGGCGGATCGATGCAAAAATCAGCAATGCCGTCATGGCCAGAC
ATCTAGGTGTCGCCACTACGACTTTGACTAGATCTCTGAAAGAAAACAGT
TTTTCGGAAGACCTCGGAGAAAGGGTGCGCGCGATGCTGGCCGATCCGGC
TGCTTTCGAGTTGCGAAAAACGTTGCCTGAAGCGGTTGGCGATGAGAGGG
CGCTAAGTGTCAAAGATGTGCAAGTATTGCAAAAATTTGCTGGCCTTTTG
CCGCTGGCCGAAGCAATAATCAAGAACCTCGTCGAGCGAACCGGCGCGAA
GGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53110:105..461+

>mRNA_P-wetherbeei_contig53110.1.1 ID=mRNA_P-wetherbeei_contig53110.1.1|Name=mRNA_P-wetherbeei_contig53110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig53110:105..461+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGGACGCCCTAAAAGAGCTTTAGATGCGCAACTCGCAGCCGAACT
TTGCGCTCGGCGGATCGATGCAAAAATCAGCAATGCCGTCATGGCCAGAC
ATCTAGGTGTCGCCACTACGACTTTGACTAGATCTCTGAAAGAAAACAGT
TTTTCGGAAGACCTCGGAGAAAGGGTGCGCGCGATGCTGGCCGATCCGGC
TGCTTTCGAGTTGCGAAAAACGTTGCCTGAAGCGGTTGGCGATGAGAGGG
CGCTAAGTGTCAAAGATGTGCAAGTATTGCAAAAATTTGCTGGCCTTTTG
CCGCTGGCCGAAGCAATAATCAAGAACCTCGTCGAGCGAACCGGCGCGAA
GGAATAG
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