mRNA_P-wetherbeei_contig53107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53107.1.1
Unique NamemRNA_P-wetherbeei_contig53107.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53107.1.1 vs. uniprot
Match: A0A521VPW0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VPW0_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 2.290e-6
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:  127 VKVTVTGE-DEGICGLRVEYGNGDVDVTKMAKDKDNF-PRSFNKSYNKAGTYTIIAKGGRDGAAFGCNGEAKAQVVIAEA 360
            VK  V+G+  E  CG+ ++YG+     T++   KD   PR F  ++N+AG +T+ AKG R    F C+GEA   V + EA
Sbjct:   44 VKFMVSGQGSEDNCGIWIDYGDQGSPDTRIVGRKDGMLPREFVHTFNRAGQFTVTAKGRRVKTTFACDGEASTVVTVVEA 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A521VPW0_9PROT2.290e-638.75Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53107contigP-wetherbeei_contig53107:121..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categorysignal peptide
Exons1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.4513352-CDS-P-wetherbeei_contig53107:120..5401683186795.4513352-CDS-P-wetherbeei_contig53107:120..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53107 121..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53107.1.1prot_P-wetherbeei_contig53107.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53107 121..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53107.1.1

>prot_P-wetherbeei_contig53107.1.1 ID=prot_P-wetherbeei_contig53107.1.1|Name=mRNA_P-wetherbeei_contig53107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MNNKTAIRTIAALILAASGSVVMAGNISGVKVEPASGQVGTPVKVTVTGE
DEGICGLRVEYGNGDVDVTKMAKDKDNFPRSFNKSYNKAGTYTIIAKGGR
DGAAFGCNGEAKAQVVIAEAPKPAAAPAAAPAAAAAPACP
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mRNA from alignment at P-wetherbeei_contig53107:121..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53107.1.1 ID=mRNA_P-wetherbeei_contig53107.1.1|Name=mRNA_P-wetherbeei_contig53107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig53107:121..540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAACAAAACCGCAATTCGTACCATCGCCGCACTGATCCTGGCCGC
ATCCGGCAGCGTCGTGATGGCGGGCAATATCAGCGGCGTCAAGGTCGAGC
CGGCCAGCGGGCAGGTCGGCACACCGGTCAAGGTCACGGTTACCGGCGAG
GACGAAGGCATTTGCGGCCTGCGGGTCGAATACGGCAATGGTGACGTCGA
TGTCACCAAGATGGCCAAGGACAAAGACAATTTCCCGCGCAGCTTCAACA
AGTCGTACAACAAGGCCGGCACCTACACCATTATCGCCAAGGGCGGCCGT
GATGGTGCTGCCTTTGGCTGTAACGGTGAAGCCAAGGCCCAGGTTGTCAT
CGCCGAAGCGCCCAAGCCCGCCGCCGCGCCGGCAGCCGCCCCTGCAGCTG
CTGCCGCGCCCGCATGTCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53107:121..540+

>mRNA_P-wetherbeei_contig53107.1.1 ID=mRNA_P-wetherbeei_contig53107.1.1|Name=mRNA_P-wetherbeei_contig53107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig53107:121..540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAACAAAACCGCAATTCGTACCATCGCCGCACTGATCCTGGCCGC
ATCCGGCAGCGTCGTGATGGCGGGCAATATCAGCGGCGTCAAGGTCGAGC
CGGCCAGCGGGCAGGTCGGCACACCGGTCAAGGTCACGGTTACCGGCGAG
GACGAAGGCATTTGCGGCCTGCGGGTCGAATACGGCAATGGTGACGTCGA
TGTCACCAAGATGGCCAAGGACAAAGACAATTTCCCGCGCAGCTTCAACA
AGTCGTACAACAAGGCCGGCACCTACACCATTATCGCCAAGGGCGGCCGT
GATGGTGCTGCCTTTGGCTGTAACGGTGAAGCCAAGGCCCAGGTTGTCAT
CGCCGAAGCGCCCAAGCCCGCCGCCGCGCCGGCAGCCGCCCCTGCAGCTG
CTGCCGCGCCCGCATGTCCT
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