mRNA_P-wetherbeei_contig531.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig531.2.1
Unique NamemRNA_P-wetherbeei_contig531.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.270e-26
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAHSLFG-GEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            LVK CRSG+K+ YRFFLFSD +LYAH  FG GEW+VHEQL L  L + + + D+K CRFH+ HPKKSF V AE+AE K  WM DI
Sbjct: 2168 LVKVCRSGRKIAYRFFLFSDMLLYAHQAFGSGEWQVHEQLQLSMLRVEDEQ-DRKGCRFHIHHPKKSFAVSAESAEDKAEWMDDI 2251          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.250e-25
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            L K  R+G+K+TYRFFLFSDQ++YAH LF G+W++HEQLLL  + + +V+  K D +F +QHPKKSFT+ A+T   KRAWM  I
Sbjct:  775 LTKFTRTGRKMTYRFFLFSDQLVYAHQLFSGDWKMHEQLLLALVKVVDVQDKKDDSKFCIQHPKKSFTLSAKTVWNKRAWMTAI 858          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: D8LKD8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD8_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 9.830e-25
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            L+K  R+G+K++YRFFLFSDQ++YAH LF G+W++HEQLLL  + + +V+  K D +F +QHPKKSFT+ A+T   KRAWM  I
Sbjct:  715 LIKFTRTGRKMSYRFFLFSDQLVYAHQLFSGDWKMHEQLLLALVKVVDVQDKKDDSKFCIQHPKKSFTLSAKTVWNKRAWMTAI 798          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.910e-25
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            LVK CRSGK+  Y FFLFSDQ+LY H  F GE++VH+QLLL    ++NV+ D+++C F + HP+KSF V A++ E+KR WMRDI
Sbjct: 1842 LVKKCRSGKRKVYTFFLFSDQLLYTHRGFAGEFKVHQQLLLSLTKVSNVE-DRRNCSFQIHHPQKSFVVVADSPEMKRVWMRDI 1924          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A482RV58_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV58_9ARCH)

HSP 1 Score: 87.4 bits (215), Expect = 2.510e-20
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            L +  R+GK VTYRFFLFSD +LYAH     E+ VHEQL L  L +++V+GD   C F++ HP KSF V  ++   K  W+RDI
Sbjct:    6 LFQVSRNGKAVTYRFFLFSDNLLYAHLSLKKEYVVHEQLSLTALQVSDVEGDASCCSFYLSHPVKSFVVVTDSPHNKALWIRDI 89          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A7S2BWK4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWK4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.150e-19
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMR 246
            LVK C+SGK V+YRFFLFSDQ++Y H  F GE++VH+QLLL  L   ++  D     F + HP KSF V AE+ + K  W+R
Sbjct:  109 LVKKCQSGKSVSYRFFLFSDQLVYTHRAFSGEYKVHKQLLLSVLRCEDI--DDNPTAFRILHPLKSFAVTAESPQAKTQWVR 188          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A7R9YDJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDJ0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.160e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAH-SLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMR 246
            LVK CRSGKKV YRFFLFSDQ++Y H +L GG++++HE+L +    +  ++   +   FH+ HPKKSFTV A T E KR W+R
Sbjct: 1690 LVKLCRSGKKVQYRFFLFSDQLIYTHQALVGGQFKLHERLPV---CVMRIEDLGQSHAFHIHHPKKSFTVFAPTEEDKRIWIR 1769          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A7S2UF65_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF65_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.950e-17
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    7 KSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIA---NVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            +S RSG+ V YRFFLFSD ++YA     G++++HE+L L  + +    N   +KK   F M HP+KSF V A T E K  W+RDI
Sbjct:    3 RSNRSGRNVKYRFFLFSDMLIYAEKSSSGQYKIHEELSLHLMKVTDDTNGTSNKKSRSFQMHHPRKSFLVIAPTRENKSIWVRDI 87          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: A0A7S1TSV1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSV1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.370e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 LVKSCRSGKKVTYRFFLFSDQVLYAH-SLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            LVK CRSGKKVTYRFFLF+DQ+LYA  +L  G +++H QL +  + + ++        F + HP+KSF V A + + KR WMR I
Sbjct: 1695 LVKVCRSGKKVTYRFFLFNDQLLYARQTLVRGTFKLHTQLPVSVMRVDDIPNSATS--FQVNHPRKSFVVIAPSEDEKRIWMRVI 1777          
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Match: K0RXB3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXB3_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 1.870e-14
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   19 SGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVKGDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI 252
            SG+   YRFFLFSD ++Y H    G++++HE+L L  + I + +GD K C F + HP KSFTV A     K  W+  I
Sbjct: 1587 SGRTACYRFFLFSDVLVYGHKSSQGDYKIHEELPLKLIKITDAEGDAKQCSFRINHPNKSFTVVAANDTDKEEWIESI 1664          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig531.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835ZFI0_9STRA1.270e-2663.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LAN0_9PHAE7.250e-2557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD8_ECTSI9.830e-2555.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
W7U6C9_9STRA9.910e-2557.14Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
A0A482RV58_9ARCH2.510e-2050.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2BWK4_9STRA3.150e-1951.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9YDJ0_9STRA4.160e-1853.01Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2UF65_9STRA6.950e-1745.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1TSV1_9STRA7.370e-1548.24Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
K0RXB3_THAOC1.870e-1443.59Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig531contigP-wetherbeei_contig531:8570..9150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKD8
Preferred nameYEL1
PFAMsPH,PH_9,Sec7
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K12494,ko:K17362,ko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001558,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
Exons2
Evalue1.61e-25
EggNOG OGsCOG5307@1|root,KOG1729@1|root,KOG0929@2759|Eukaryota,KOG1729@2759|Eukaryota
Descriptionlipid binding
Cds size252
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.194895-CDS-P-wetherbeei_contig531:8569..87581683186795.194895-CDS-P-wetherbeei_contig531:8569..8758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig531 8570..8758 -
1683186795.204372-CDS-P-wetherbeei_contig531:9087..91501683186795.204372-CDS-P-wetherbeei_contig531:9087..9150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig531 9088..9150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig531.2.1prot_P-wetherbeei_contig531.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig531 8570..9150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig531.2.1

>prot_P-wetherbeei_contig531.2.1 ID=prot_P-wetherbeei_contig531.2.1|Name=mRNA_P-wetherbeei_contig531.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
LVKSCRSGKKVTYRFFLFSDQVLYAHSLFGGEWRVHEQLLLPHLTIANVK
GDKKDCRFHMQHPKKSFTVQAETAELKRAWMRDI
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mRNA from alignment at P-wetherbeei_contig531:8570..9150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig531.2.1 ID=mRNA_P-wetherbeei_contig531.2.1|Name=mRNA_P-wetherbeei_contig531.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=581bp|location=Sequence derived from alignment at P-wetherbeei_contig531:8570..9150- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCAAGAGCTGCCGCAGCGGCAAGAAGGTCACCTATCGCTTCTTCCT CTTCTCCGACCAGGTGAGTACTGCGGTGGACCAGCAGGCTGACTAGTGGC TGGCTGCGCTTGAGTCATCGCAGCGGCGATAGCGGTGGTGGCAGCGGCGG CGGCAGCATCGCCCAGGTGATGGCGCGTCGCCATTTGCTTCATTTCTTCT AGCTCAGCCCTGCTCTACGCAGTTTTAAAGCGAGCGGCGGTGGCAAAAGG TGATTCTCTTCTCTGTGGGAATGTGGATCGGCTTGATGAAAGGAAGAGAA AAGGAAGAAATATGATAATCTCTCTTGTTGATCATCCCATCCGGTCCCGT TATCGTGTCCATCCGCCCACCCTTTACCTCTCCTTGTCTCAGGTGCTGTA CGCCCACAGCCTGTTCGGCGGCGAGTGGCGCGTCCACGAGCAGCTGCTGC TGCCGCACCTGACTATTGCGAACGTTAAAGGCGACAAGAAGGATTGCCGC TTCCACATGCAGCACCCCAAGAAGAGTTTCACGGTGCAGGCCGAGACTGC CGAGCTCAAGCGCGCCTGGATGCGCGACATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig531:8570..9150-

>mRNA_P-wetherbeei_contig531.2.1 ID=mRNA_P-wetherbeei_contig531.2.1|Name=mRNA_P-wetherbeei_contig531.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig531:8570..9150- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCAAGAGCTGCCGCAGCGGCAAGAAGGTCACCTATCGCTTCTTCCT
CTTCTCCGACCAGGTGCTGTACGCCCACAGCCTGTTCGGCGGCGAGTGGC
GCGTCCACGAGCAGCTGCTGCTGCCGCACCTGACTATTGCGAACGTTAAA
GGCGACAAGAAGGATTGCCGCTTCCACATGCAGCACCCCAAGAAGAGTTT
CACGGTGCAGGCCGAGACTGCCGAGCTCAAGCGCGCCTGGATGCGCGACA
TT
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